BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63610.1
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951166 jgi|Araly1|951166|scaffold_803053.1 2305 0.0
> Ahg951166 jgi|Araly1|951166|scaffold_803053.1
Length=1451
Score = 2305 bits (1248), Expect = 0.0
Identities = 1368/1427 (96%), Gaps = 4/1427 (0%)
Strand=Plus/Plus
Query 267 AATACTAAAAAGCAATGGGAGATGGGAGTTCCAGTAGATCCAACAGCTCAAACAGCACTA 326
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 8 AATACT-AAAAGCAATGGGAGATGGGAGTTCCACTAGATCCAACAGCTCAAACAGTAGTA 66
Query 327 GTGAGAAACCAGAGTGGCTGCAACAGTACAATCTCGTTGGTAAGATTGGTGAAGGCACTT 386
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 67 GTGAGAAACCAGAGTGGCTGCAACAGTACAATCTTGTTGGTAAGATTGGTGAAGGCACTT 126
Query 387 ATGGTCTTGTTTTCTTGGCTAGAACCAAGACTCCGCCTAAAAGACCTATTGCTATCAAGA 446
||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 127 ATGGTCTTGTTTTCTTGGCTAAAACCAAGACTCCGCCTAAAAGACCAATTGCCATCAAGA 186
Query 447 AGTTTAAGCAGTCCAAAGATGGAGATGGAGTTTCCCCGACTGCTATCCGCGAGATCATGT 506
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 187 AGTTTAAGCAGTCAAAAGATGGAGATGGAGTTTCCCCAACTGCTATCCGCGAGATTATGT 246
Query 507 TGCTTAGAGAGATTTCCCATGAGAACGTCGTGAAGCTTGTGAATGTCCACATCAATTTTG 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TGCTTAGAGAGATTTCCCATGAGAACGTCGTGAAGCTTGTGAATGTCCACATCAATTTTG 306
Query 567 CAGACATGTCTCTGTATCTTGCCTTTGATTATGCCGAGTACGATCTCTATGAAATCATCA 626
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 307 CAGACATGTCTCTGTATCTTGCCTTTGATTATGCTGAGTACGATCTCTATGAAATCATCA 366
Query 627 GGCACCACAGAGACAAAGTCGGCCATTCGTTAAACACATACACAGTTAAGTCTTTGCTCT 686
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 367 GGCACCACAGAGACAAAGTCGGCCATTCGATAAACACATACACAGTTAAGTCTTTGCTCT 426
Query 687 GGCAGCTTCTCAACGGATTGAACTATCTTCACAGTAATTGGATTATACACAGAGATTTGA 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGCAGCTTCTCAACGGATTGAACTATCTTCACAGTAATTGGATTATACACAGAGATTTGA 486
Query 747 AACCGTCGAATATCTTGGTTATGGGTGATGCAGAAGAGCACGGAATAGTGAAAATAGCTG 806
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 487 AACCGTCGAATATCTTGGTTATGGGTGAAGGAGAAGAACACGGAATAGTGAAAATAGCTG 546
Query 807 ATTTCGGGCTCGCAAGGATATATCAAGCTCCGTTGAAACCACTATCGGATAACGGAGTTG 866
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 ATTTCGGGCTCGCAAGGATATATCAAGCTCCGTTGAAACCGCTATCGGATAACGGAGTTG 606
Query 867 TGGTCACAATCTGGTACCGAGCACCAGAGCTGCTTCTTGGTTCGAAGCACTACACGAGCG 926
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 607 TGGTCACAATCTGGTACCGAGCACCGGAGCTGCTTCTTGGCTCGAAGCACTACACGAGCG 666
Query 927 CTGTTGATATGTGGGCAGTTGGGTGTATATTCGCGGAGTTACTAACTCTTAAACCGTTGT 986
| || ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 667 CCGTCGATATGTGGGCGGTTGGATGTATATTCGCGGAATTACTAACTCTCAAACCGTTGT 726
Query 987 TTCAAGGAGCAGAAGCGAAATCGTCTCAAAACCCTTTCCAGTTAGATCAACTTGACAAGA 1046
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 727 TTCAAGGAGCAGAAGCGAAATCGTCTCAAAACCCTTTCCAATTAGATCAACTCGACAAGA 786
Query 1047 TATTCAAGATCTTAGGCCACCCGACGATGGATAAATGGCCAACACTAGTTAACCTTCCAC 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 787 TATTCAAGATCTTAGGCCACCCGACGATGGATAAATGGCCAACACTAGTTAACCTTCCGC 846
Query 1107 ACTGGCAAAATGATGTTCAACACATTCAAGCTCACAAATACGACAGTGTGGGTCTCCACA 1166
|||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 847 ACTGGCAAGGCGATATTCAACACATTCAAGCTCACAAATACGACAGCGTGGGACTCCACA 906
Query 1167 ACGTGGTTCACCTGAATCAGAAAAGTCCTGCGTATGATCTGTTATCCAAAATGCTGGAAT 1226
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 907 ACGTGGTTCACCTGAATCAGAAAAGTCATGCGTATGATCTGTTATCCAAAATGCTGGAAT 966
Query 1227 ATGATCCTCTAAAGCGGATCACGGCTTCACAAGCACTAGAACACGAGTATTTCCGAATGG 1286
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 ACGATCCGCTAAAGCGGATCACGGCTTCACAAGCACTAGAACACGAGTATTTCCGAGTGG 1026
Query 1287 ATCCTCTCCCAGGACGGAACGCATTTGTAGCCAGCCAACCGATGGAGAAGAATGTGAATT 1346
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1027 ATCCTCTCCCAGGACGGAACGCATTTGTAGCCACCCAACCGATGGAGAAGAATGTGAGTT 1086
Query 1347 ACCCAACTCGTCCAGTAGATACAAACACCGATTTCGAAGGCACGACAAGCATCAATCCGC 1406
||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1087 ACCCAACCCGTCCAGTCGATACAAACACGGATTTCGAAGGCACGACGAGCATCAATCCGC 1146
Query 1407 CTCAAGCAGTAGCAGCAGGAAACGTAGCAGGGAACATGGCAGGAGCTCATGGAATGGGCA 1466
||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1147 CTCAAGCGGTAGCATCAGGAAACGTAGCAGGGAACATGGCAGGGGCTCATGGAATGGGCA 1206
Query 1467 GTAGATCGATGCCAAGACCAATGGTTGCACATAACATGCAGAGGATGCAGCAATCTCAAG 1526
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1207 ATAGATCGATGCCAAGACCAATGGTTGCACATAACATGCAGAGGATGCAAC---CTCAAG 1263
Query 1527 GCATGATGGCTTATAATTTCCCGGCACAGGCAGGGCTTAACCCGAGTGTTCCGCTGCAGC 1586
||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1264 GCATGATGGCTTATAATTTTCCGGCGCAGGCGGGGCTGAACCCGAGTGTTCCACTGCAGC 1323
Query 1587 AGCAGCGCGGGATGGCTCAACCGCACCAGCAGCAACAGCTAAGAAGGAAAGATCCCGGAA 1646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AGCAGCGCGGGATGGCTCAACCGCACCAGCAGCAACAGCTAAGAAGGAAAGATCCCGGAA 1383
Query 1647 TGGGTATGTCAGGTTACGCACCTCCTAACAAATCCAGACGCCTCTAA 1693
|||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1384 TGGGAATGTCAGGTTATGCACCTCCTAACAAATCCAGACGCCTCTAA 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71419209375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5