BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63620.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496551 jgi|Araly1|496551|fgenesh2_kg.8__2367__AT5G63620.2 2281 0.0
> Ahg496551 jgi|Araly1|496551|fgenesh2_kg.8__2367__AT5G63620.2
Length=1449
Score = 2281 bits (1235), Expect = 0.0
Identities = 1382/1453 (95%), Gaps = 10/1453 (1%)
Strand=Plus/Plus
Query 88 TGTCTCTTTCGTTGCCCAAATCTCCGATCAAATTCGTCCGTCGTGTTTGCATGGCGTTTG 147
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TGTCTCTTTCGTTGCCCAAAACTCCGATCAAATTCCTCCGTCGTGTTTGCATGGCGTTTG 60
Query 148 CTCCGATTCTCCGCCGCGCCTCCGCCGTTAAGAACCTCTTCTCTTTAACAAGACTCGCCG 207
||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||
Sbjct 61 CTCCGATTCTCCGCCGCGCCTCCGCCGCTAAGAACCTCTTGTCCTTAACTAGACTCGCCG 120
Query 208 TTGGCTCTGC--C-CTCTCCACTAGGTCTCTCCAAACCGGAGCCTCCGGCGATGATTCTC 264
|| |||| | | ||||||||||||||||| ||||||||| | ||||| ||||| ||||
Sbjct 121 CTGCCTCTTCTTCTCTCTCCACTAGGTCTCTTCAAACCGGAACTTCCGGTGATGACTCTC 180
Query 265 AATCGATGGGTGGGTATCACGTGAGCCCCGGCGGATTCATGCGTGGAGCCGTGTATCGCG 324
|||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 181 AATCCATGTCTGGGTATCACGTGAGCTCCGGCGGGTTCATGCGTGGAGCCGTGTATCGCG 240
Query 325 AGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAA 384
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAAGCCAATGAAA 300
Query 385 TTCTCATCAAAACCAAAGCTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAG 444
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TTCTCATCAAAACCAAAGCTTGTGGAGTTTGTCACTCTGATCTTCATGTGATGAAAGGAG 360
Query 445 AGATACCGTTCGCTAGTCCTTGTGTTATTGGTCATGAGATTACTGGTGAAGTTGTTGAAC 504
||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 361 AGATACCATTTGCTAGTCCTTGTGTAATTGGTCATGAAATCACTGGTGAAGTTGTTGAGC 420
Query 505 ATGGTCCACTTACTGATCACAAGATCATTAATAGATTTCCAATCGGGTCTCGTGTAGTTG 564
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACGGTCCACTTACTGATCACAAGATCATTAATAGATTTCCAATCGGGTCTCGTGTAGTTG 480
Query 565 GAGCTTTCATTATGCCTTGTGGAACCTGTTCTTATTGTGCTAAGGGCCATGATGATCTAT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGCTTTCATTATGCCTTGTGGAACCTGTTCTTATTGTGCTAAGGGCCATGATGATCTAT 540
Query 625 GTGAAGACTTCTTTGCTTACAACAGAGCCAAGGGAACTCTTTACGATGGCGAAACTCGTC 684
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 541 GTGAAGACTTCTTTGCTTACAATAGAGCTAAGGGAACTCTTTACGATGGCGAAACTCGTC 600
Query 685 TCTTTTTGCGACATGATGATTCACCAGTGTATATGTATAGTATGGGAGGGATGGCTGAGT 744
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 601 TCTTTTTGCGACATGATGATTCACCAGTGTATATGTACAGTATGGGAGGTATGGCTGAGT 660
Query 745 ACTGTGTTACACCAGCTCATGGTTTAGCTCCTCTACCAGAGTCTTTGCCCTACTCTGAAT 804
||||||| ||||||||||| || |||||||||||||| ||||| ||||||||| ||||||
Sbjct 661 ACTGTGTCACACCAGCTCACGGGTTAGCTCCTCTACCGGAGTCGTTGCCCTACACTGAAT 720
Query 805 CTGCCATTCTGGGATGTGCTGTTTTTACAGCATATGGTGCTATGGCTCATGCTGCTGAGA 864
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGCAATTCTAGGTTGTGCTGTTTTTACAGCATATGGTGCTATGGCTCATGCTGCTGAGA 780
Query 865 TCCGTCCTGGAGATTCTATTGCAGTTATTGGAATTGGTGGTGTGGGCTCCAGTTGTTTGC 924
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 781 TCCGTCCTGGAGATTCTATTGCTGTTATTGGAATTGGTGGTGTTGGCTCCAGTTGTTTGC 840
Query 925 AGATCGCAAGGGCTTTTGGAGCCTCGGATATCATTGCTGTGGATGTTCAGGATGATAAAT 984
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 AGATCGCGAGGGCTTTTGGAGCCTCGGATATAATTGCTGTGGATGTTCAGGATGATAAAT 900
Query 985 TACAGAAGGCCAAGACACTTGGTGCTACTCATATTGTCAATGCTGCTAAAGAAGATGCTG 1044
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 TGCAGAAGGCCAAGACACTTGGTGCTACCCATATTGTCAATGCTGCTAAAGAAGATGCTG 960
Query 1045 TTGAAAGGATAAGAGAAATAACCGGTGGGATGGGTGTTGATGTTGCTGTTGAAGCCTTGG 1104
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGACAGGATAAGAGAAATAACCGGTGGGATGGGTGTTGATGTTGCTGTTGAAGCCTTGG 1020
Query 1105 GAAAGCCTCAAACTTTCATGCAGTGCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAAAGCCTCAAACTTTCATGCAGTGCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGA 1080
Query 1165 TGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTA 1224
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 TGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAACCGACTTGTTCGTA 1140
Query 1225 GAAAGATAAAAGTTATAGGATCTTATGGAGGAAGAGCAAGACAGGATCTTCCTAAAGTAG 1284
||||| | |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAAAGGTTTGGGTTATAGGGTCATATGGAGGAAGAGCAAGACAGGATCTTCCTAAAGTAG 1200
Query 1285 TGAAATTGGCAGAGTCAGGGATTTTCAATCTCACAAACGCAGTCTCAAGTAAATACAAGT 1344
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TGAAGTTGGCAGAGTCAGGGATTTTCAATCTCACAAACGCAGTCTCAAGTAAATACAAGT 1260
Query 1345 TTGAAGATGCAGGAAAAGCATTTCAAGATCTCAACGAAGGCAAAATCGTGAGCCGAGGTG 1404
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1261 TTGAAGATGCAGGAAAAGCATTTCAAGATCTCAATGAAGGCAAAATCGTGAGCCGAGGTG 1320
Query 1405 TTGTTGAGATACTATAACCAATATAGCCTTTTGATTCTGGTTTGTGAATGACTGCTTCAC 1464
|||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 1321 TTGTTGAGATACTATAACCA-TA--GCCTTTTGATTCTGGTTTGGGAATGACTGCTTCAT 1377
Query 1465 ACCTG-TTTCACTGAGGTCTATTTTT-AGTTGCTACAATCTTCAGA-CAAGGTCATTGTT 1521
||||| ||| || ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1378 ACCTGATTT-ACAGAGGTCTATTTTTTAGTTGCTACAATCTTCAGAACAAGGTCATTGTT 1436
Query 1522 AATCTGATATTTG 1534
|||||||||||||
Sbjct 1437 AATCTGATATTTG 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5