BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63630.1
Length=2476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918145 jgi|Araly1|918145|Al_scaffold_0008_2896 3382 0.0
Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1 1406 0.0
Ahg940355 jgi|Araly1|940355|scaffold_600899.1 1238 0.0
> Ahg918145 jgi|Araly1|918145|Al_scaffold_0008_2896
Length=2166
Score = 3382 bits (1831), Expect = 0.0
Identities = 2063/2172 (95%), Gaps = 27/2172 (1%)
Strand=Plus/Plus
Query 326 ATGCCTTTGAATTTCCCTCTCCGAATACGATTCTTCGCTCACTCTCTTTCGGGTACACAT 385
||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 1 ATGCCTTTGAAGTTCCTTCTCCGAATACGATTCTTCACTCACTCTCTTCCGGGTACTCAT 60
Query 386 CTCTCTTATAATACCTCTAGCTCCGTCCCTTTGCTCTTCCGGATATTCTCTTCT-GGATT 444
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 61 CTCTCTTATAATCCCTCTAGCTCCGTCCCTTTGCTCTTCCGGATATTCTCTTCTAGG-TT 119
Query 445 GAATCACTTTGAATTTGGGTCTCGCATAAACTTCTCAACCCGTCCTAACAGAGATCAACC 504
||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 120 GAATCACTTTGAATTCGGGTCTCGCATCAACTTCTCAACCCGTCCGAACAGAGACCAACC 179
Query 505 AGAATTTGAGCGGCGGATTCGAGACGGAGGAGAAATTCGCGCGTCAAAGAGCTTGATCGA 564
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 CGAATTTGAGCGGCGGATTCGAGATGGAGGAGAAATTCGCGCGTCAAAGAGCTTGATCGA 239
Query 565 AGACGAGGAAGAGCTCAGCAATTGGGTAAGCGGTTTTAGAACCGGATCTTCGCGTGGAAT 624
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGACGAAGAAGAGCTCAGCAATTGGGTAAGCGGTTTTAGAACCGGATCTTCGCGTGGACG 299
Query 625 TCTCAAGAGTGACGATGAAGAT----G-----A---GGAGGATCGTAGCAGAGGAAGAAA 672
||||| |||||| ||||||||| | | |||||||||||||||||||||||
Sbjct 300 TCTCACGAGTGAAGATGAAGATGCGGGTCCAAACGTGGAGGATCGTAGCAGAGGAAGAAT 359
Query 673 CCAAGAGAAGAGAGGAATTCGCAACCAAGTTGATTCCTTTAGGAATAAGCGTTATGGTGG 732
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||
Sbjct 360 TCAAGAGAAGAGAGGAATTCGCAACCAAGTTGATTCTTTTAGGGATAAGCGTTATGATGG 419
Query 733 TGATAGAGAAAGGGGATTCAATAGTCGGATTCAAGGAAAGAGTAG-CGAGGCGTCATTTC 791
||||||||||||||||||||||||||||||||| ||||||||||| | | || || |||
Sbjct 420 TGATAGAGAAAGGGGATTCAATAGTCGGATTCAGGGAAAGAGTAGTC-AAGCTTC-TTTT 477
Query 792 G-TGGGAGGAAAGAGACAAGCTTT-----AG-TAGAGATAGAGAAGACGAGAAGGGTTTA 844
| |||||||||||| ||||| ||| || |||||||| ||||||| | |||||||||
Sbjct 478 GATGGGAGGAAAGACACAAGTTTTAGGAGAGATAGAGATAAAGAAGACTACAAGGGTTTA 537
Query 845 AGGAAACGGGAAGATCTTCGTCTTGAAGACGAAAGTAGTGATGAGGATGTCAAGAGTTTA 904
||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 538 AGGAAACGGGAAGAT-AT--TCTTGAAGACGAAAGTAGTGATGAGGATGTGAAGAGTTTA 594
Query 905 GTAATGGGAGATATTGGGGATTTGCTTAGTGAAGATGATGAGGAAGAGGACCAAGATTAT 964
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTAATGGGAGGTATTGGGGATTTGCTTAGTGAAGATGATGAGGAAGAGGACCAAGATTAT 654
Query 965 GACTTTCTTAAGAAGAAAGCTGTTTCTGCTTTTGGGTTTGATAAGGAGAATGTTATAGAA 1024
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct 655 GAATTTCTTAAGAAGAAAGCGGTTTCTGCTTTTGGGTTTGATAAGGAGAAGGTTACAGAA 714
Query 1025 GCGGATAAAACGAGGAATGCAAATGATTCTTATTTGACTAAGACAAGATTTGATCACTAT 1084
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 715 GCGGATAAGGCAAGGAATGCGAATGATTCTTATTTGACTAAGACAAGATTTGATCAGTAT 774
Query 1085 CCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTT 1144
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 775 CCATTGTCTCCCTTATCGCTAAAAGCCATCAAGGATGCTGGATACGAGACAATGACTGTT 834
Query 1145 GTTCAGGAAGCTACTCTCCCTATAATTCTCAAAGGCAAGGATGTCCTAGCTAAGGCCAAA 1204
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 835 GTGCAGGAAGCTACTCTCCCTATAATTCTCAAAGGTAAAGATGTCCTAGCTAAGGCCAAA 894
Query 1205 ACAGGAACTGGGAAAACTGTAGCGTTTTTGCTTCCATCAATTGAAGTAGTTGTCAAATCT 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACAGGAACTGGGAAAACTGTAGCGTTTTTGCTTCCATCAATTGAAGTAGTTGTCAAATCT 954
Query 1265 CCTCCTACAAGCCCGGATAATAAGCGACCCCCAATCCTTGCGCTTGTGATATGCCCTACT 1324
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 955 CCTCCTACAAGCCCGGATAATAAGCGACCCCCAATTCTTGCGCTTGTGATATGCCCAACT 1014
Query 1325 AGAGAACTTGCCAATCAAGCTGCTACAGAAGCAAACACCTTGCTAAAGTATCATCCATCT 1384
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGAGAACTTGCCAATCAAGCTGCAACAGAAGCAAACACCTTGCTAAAGTATCATCCATCT 1074
Query 1385 ATTGGTGTTCAAGTTGTGATTGGAGGTACGAGACTTGGTTTAGAGCAAAAGCGTATGCAA 1444
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1075 ATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGGTTTAGAGCAAAAGCTTATGCAA 1134
Query 1445 ACAAATCCTTGCCAGATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAAC 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ACAAATCCTTGCCAGATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAAC 1194
Query 1505 ACGCCAGGCTTTGCAACGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGAT 1564
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACGCCAGGCTTTGCAACAAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGAT 1254
Query 1565 CATCTTTTAGATATGGGCTTTCGCAAGGACATTGAGAGGATAATTTCCGCTGTTCCTAAG 1624
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CATCTTTTAGACATGGGCTTTCGCAAGGACATTGAGAGGATAATTTCCGCTGTTCCTAAG 1314
Query 1625 GAGAGACAAACTTTTCTATTTTCCGCCACAGTACCTGAAGAGGTACGCCAAATATGCCTT 1684
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1315 GAGAGACAAACTTTTCTATTTTCTGCCACAGTACCTGAAGAGGTTCGCCAAATATGCCTA 1374
Query 1685 GTTGCTCTAAGGCGGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACG 1744
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GTTGCTCTGAGGCGGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACG 1434
Query 1745 CATCAACAGGTCAGACAAATGCACATGATTGCATCACTGGACAGACATTTCTCTCTTCTG 1804
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1435 CATCAACAGGTCAGACAAATGCACATGATTGCATCACTAGACAGACATTTCTCTCTTGTG 1494
Query 1805 TACACACTTCTTCGCGAACACATTATGGGTAACGTAGACTATAAGGTCATTGTCTTCTGT 1864
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1495 TACACACTTCTTCGCCAACACATTATGGATAACGTAGACTATAAGGTCATTGTCTTCTGT 1554
Query 1865 ACAACGGCCATGGTTACAAAATTAGTGGCTGATCTACTTGGTGAGCTAAACTTAAACGTG 1924
||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||| |||
Sbjct 1555 ACAACTGCCATGGTTACAAAATTAGTTGCTGATCTACTAGGTGAGATAAACTTAAATGTG 1614
Query 1925 AGAGAGATCCATTCTAGAAAACCGCAGAGTTACAGGACAAGGGTTTCTAACGAGTTCCGA 1984
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1615 AGAGAGATCCATTCTAGAAAACCGCAGAGTTACAGGACGAGGGTTTCTAATGAGTTCCGA 1674
Query 1985 AAATCCAAGGGTTTGATTCTCGTAACATCTGATGTATCTGCTCGAGGAGTTGATTACCCT 2044
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1675 AAATCCAAGGGTTTGATTCTGGTAACATCTGATGTATCTGCTCGAGGAGTCGATTACCCT 1734
Query 2045 GATGTGACCCTTGTTTTACAGGTTGGATTGCCAAAAGACAGAGAACAATATATACACAGA 2104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1735 GATGTGACCCTTGTTTTACAGGTGGGATTGCCAAAAGACAGAGAACAATATATACACAGA 1794
Query 2105 CTTGGTAGAACCGGGCGAAAAGGAAAGGAAGGAGAAGGCATATTGTTGTTGGCACCATGG 2164
||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1795 CTTGGTAGAACGGGGAGAAAAGGAAAGGAAGGAGAAGGCCTATTGTTGTTGGCACCATGG 1854
Query 2165 GAGGAATACTTTCTATCATCTCTTAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCA 2224
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1855 GAGGAATACTTTCTATCATCTCTGAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCA 1914
Query 2225 ATAGACCCAGAAACTGTAAAAAAGGTGCAAAAGGCGCTTTGCCATGTCGAGATGAGGAAC 2284
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1915 ATAGACCCAGAAACTGTAAAAAAGGTGCAAAAGGCGCTTTGCCATGTTGAGATGAGGAAC 1974
Query 2285 AAAGAGGCGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGA 2344
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AAGGAGGCGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGA 2034
Query 2345 GACAAAGACAGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAAT 2404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 GACAAAGACAGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAAT 2094
Query 2405 CCTCCAGCTATACCAAAACTTATCCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTT 2464
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2095 CCTCCAGCTATACCAAAACTTATTCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTC 2154
Query 2465 AGAGCCAAGTAA 2476
||||||||||||
Sbjct 2155 AGAGCCAAGTAA 2166
> Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1
Length=2540
Score = 1406 bits (761), Expect = 0.0
Identities = 1219/1441 (85%), Gaps = 28/1441 (2%)
Strand=Plus/Plus
Query 1049 GATTCTTATTTGACTAAGACAAGATTTGATCACTAT-CCATTGTCTCCCTTATCGCTAAA 1107
|||||||| ||| ||||||||||||||||||| | | ||| | |||||||| ||||||||
Sbjct 1005 GATTCTTACTTGTCTAAGACAAGATTTGATCAAT-TCCCACTCTCTCCCTTGTCGCTAAA 1063
Query 1108 GGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTAT 1167
|| ||||||||||| |||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 1064 AGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACTCTTCCTAT 1123
Query 1168 AATTCTCAAAGGCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGC 1227
|||||| |||| || ||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct 1124 CATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTGGGAAAACCGTTGC 1183
Query 1228 GTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCGGATAATA 1286
|||||||||||| ||||||||| | ||| |||||||||| ||| |||||| ||||||||
Sbjct 1184 ATTTTTGCTTCCAGCAATTGAAGCT-GTTATCAAATCTCCCCCTGCAAGCCGGGATAATA 1242
Query 1287 AGCGACCCCCAATCCTTGCGCTTGTGATATGCCCTACTAGAGAACTTGCCAATCAAGCTG 1346
|| ||||||||| ||| ||||||| |||| |||||| | |||||||||| ||||||||
Sbjct 1243 GGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCCAGTCAAGCTG 1302
Query 1347 CTACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGATTG 1406
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1303 CGGCAGAAGCAAACACCTTGCTGAAGTATCACCCATCTATTGGTGTTCAAGTTGTGATTG 1362
Query 1407 GAGGTACGAGACTTGGTTTAGAGCAAAAGCGTATGCAAACAAATCCTTGCCAGAT-TTTA 1465
||||||| | |||| | |||||||| |||||||||||| |||||||||||||| ||
Sbjct 1363 GAGGTACAAAACTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTTGCCAGATCCTT- 1421
Query 1466 GTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACGAGG 1525
||||||||||| |||||||||||||||||||| |||||||| | || |||||||| ||
Sbjct 1422 GTGGCTACACCCGGAAGGCTCAAAGACCATATTGAGAACACTTCTGGATTTGCAACAAGA 1481
Query 1526 TTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGATATGGGCTTT 1585
|| | ||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 1482 TTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACATGGG-TTT 1540
Query 1586 C-GCAAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TTTTCTA 1642
| | |||| | |||||||||||||| | ||||| |||||| |||||||||| |||| ||
Sbjct 1541 CCG-AAGGGATATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACATTTT-TA 1598
Query 1643 TTTTCCGCCACAGTACCTGAAGAGGTACGCCAAATATGCCTTGTTGCTCT-AAGGCGGGA 1701
||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |||||
Sbjct 1599 TTTTCCGCCACTGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGAAA-CGGGA 1657
Query 1702 TCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTCAGACA 1761
||| ||||| ||||||||||||| || || ||| ||||| |||||| |||||| |||
Sbjct 1658 TCATGAGTTCATCAATTGTGTTCAAGAGGGGACTGGGGAGACACATCAAAAGGTCACACA 1717
Query 1762 AATGCACATGATTGCATCACTGGACAGACATTTCTCTCTTCTGTACACACTTCTTCGCGA 1821
|||| ||||||||||||||||||| ||||||||||| ||||| || |||||| ||
Sbjct 1718 AATGTACATGATTGCATCACTGGATAGACATTTCTCGCTTCTATATGTGCTTCTTAAAGA 1777
Query 1822 ACACATTATGGGTAACGTAGACTATAAGGTCATTGTCTTCTGTACAACGGCCATGGTTAC 1881
|||||| | ||| || ||||||||||| || | ||||||||||| || ||||| ||
Sbjct 1778 ACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTATGGTGAC 1837
Query 1882 AAAATTAGTGGCTGATCTACTTGGTGAGCTAAACTTAAACGTGAGAGAGATCCATTCTAG 1941
|| ||| ||||||||||| ||| || |||||||| | ||||| |||||||||||||||||
Sbjct 1838 AAGATTGGTGGCTGATCTGCTTAGTCAGCTAAACCTGAACGTCAGAGAGATCCATTCTAG 1897
Query 1942 AAAACCGCAGAGTTACAGGACAAGGGTTTCTAACGAGTTCCGAAAATCCAAGGGT-TTGA 2000
|||||||||||||||||| || || |||||| | |||||||| || ||||||| | || |
Sbjct 1898 AAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGGCTATT-A 1956
Query 2001 TTCTCGTAACATCTGATGTATCTGCTCGAGGAGTTGATTACCCTGATGTGACCCTT-GTT 2059
| || || |||||||||||||||||||| || || ||||||||||||||| | || ||
Sbjct 1957 TCCTTGTCACATCTGATGTATCTGCTCGTGGTGTCGATTACCCTGATGTGTCA-TTAGTC 2015
Query 2060 TTACAGGTTGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAACCGGG 2119
||||| | ||||||||| |||||| || || |||||||| |||||||| ||||| |||
Sbjct 2016 GTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAACGGGG 2075
Query 2120 CGAAAAGGAAAGGAAGGAGAAGGCA-TATTGTTGTTGGCACCATGGGAGGAATACTTTCT 2178
|| ||||| |||||||| ||||| | |||| ||||||||||||||||| || |||||| |
Sbjct 2076 CGGAAAGGTAAGGAAGGGGAAGG-AGTATTATTGTTGGCACCATGGGAAGAGTACTTTAT 2134
Query 2179 ATCATCTCTTAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCAATAGACCCAGAAAC 2238
|||||| ||||||| || |||||||| |||||||| || || ||||||||||||| |
Sbjct 2135 GTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAGAGGC 2194
Query 2239 TGTAAAAAAGGTGCA-AAAGGCGCTTTGCCATGTCGAGATGAGGAACAAAGAGGCGGCGT 2297
||| |||| |||||| ||||| ||| |||| || || |||| |||||| ||||||||||
Sbjct 2195 TGTGAAAAGGGTGCAGAAAGG-GCTAAGCCAAGTGGAAATGAAGAACAAGGAGGCGGCGT 2253
Query 2298 ATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAAGAC-AGG 2356
||||||| ||||||||||||||||| || ||||||||||||| |||||||| ||| ||
Sbjct 2254 ATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACAC-GACCAGA 2312
Query 2357 CTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAATCCTCCAGCTATA 2416
|| ||||||||||| || |||||||| || || ||||||||||||| || ||||||||
Sbjct 2313 CTGGTGGAGTTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCTATC 2372
Query 2417 CC-AAAACT-TATCCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTTAGAGCCAAGT 2474
|| |||| | | || |||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2373 CCCAAAAATGT-TC-TTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAAGT 2430
Query 2475 A 2475
|
Sbjct 2431 A 2431
> Ahg940355 jgi|Araly1|940355|scaffold_600899.1
Length=1721
Score = 1238 bits (670), Expect = 0.0
Identities = 1193/1443 (83%), Gaps = 46/1443 (3%)
Strand=Plus/Plus
Query 1049 GATTCTTATTTGACTAAGACAAGATTTGATCACTAT-CCATTGTCTCCCTTATCGCT-AA 1106
|||||||| ||| | ||||||||||||||||| | | ||| |||||||||||||||| ||
Sbjct 225 GATTCTTACTTGTCAAAGACAAGATTTGATCAGT-TCCCACTGTCTCCCTTATCGCTAAA 283
Query 1107 AGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTA 1166
||| ||| ||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 284 AGG-AATTGTGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTC 342
Query 1167 TAATTCTCAAAGGCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAG 1226
| |||||| |||| || ||| |||| || |||||||||||||| ||||||||||| || |
Sbjct 343 TCATTCTCCAAGGTAAAGATATCCTTGCCAAGGCCAAAACAGGCACTGGGAAAACCGTTG 402
Query 1227 CGTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCGGATAAT 1285
| |||||||||||||||||||||| | ||| |||||||||||||| |||||| |||||||
Sbjct 403 CTTTTTTGCTTCCATCAATTGAAGCT-GTTATCAAATCTCCTCCTGCAAGCCGGGATAAT 461
Query 1286 AAGCGA-CCCCCAATCCTTG-CGCTTGTGATATGCCCTACTAGAGAACTTGCCAATCAAG 1343
| || | |||||||| ||| | |||||| |||| |||||| | |||||||| |||||
Sbjct 462 AGGC-ATCCCCCAATTATTGTC-CTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAG 519
Query 1344 CTGCTACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGA 1403
||||| |||| ||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 520 CTGCTGCAGAGGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGA 579
Query 1404 TTGGAGGTACGAGA-CTTGGTTTAGAGCAAAAGCG-TATGCAAACA-AATCCTTGCCAGA 1460
||||||| || | | ||| | |||||||| ||| | |||||| | | ||| |||||||
Sbjct 580 TTGGAGGCAC-AAAGCTTCCTACAGAGCAAAGGCGCT-TGCAAA-AGAGTCCATGCCAGA 636
Query 1461 TTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAA 1520
|| | ||||||||||| ||||||||||||||||||||||| ||||| | || |||||||
Sbjct 637 TTCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAA 696
Query 1521 CGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGATATGG 1580
| ||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 697 CAAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTGGACATGG 756
Query 1581 GCTTTC-GCAAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TT 1637
| |||| | |||| | |||||||||||||| | ||||| |||||| |||||||||| ||
Sbjct 757 G-TTTCCG-AAGGGAGATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACCTT 814
Query 1638 TTCTATTTTCCGCCACAGTACCTGAAGAGGTACGCCAAATATGCCTTGTTGCTCT-AAGG 1696
|| ||||||||||||| ||||||||||| || |||||||| |||| ||||||||| ||
Sbjct 815 TT-TATTTTCCGCCACTGTACCTGAAGAAGTCCGCCAAATGTGCCATGTTGCTCTGAAA- 872
Query 1697 CGGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTC 1756
|||||||| || || |||||||||||||| || || || |||||||||||| |||||
Sbjct 873 CGGGATCATGAATTCGTCAATTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTC 932
Query 1757 AGACAAATGCACATGATTGCATCACTGGACAGACATTTCTCTCTTCTGTACACACTTCTT 1816
||||||| |||||||||||||| | || ||||||||||| ||||| || |||||
Sbjct 933 TCACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTTTATGGTCTTCTG 992
Query 1817 CGCGAACACATTATGGGTAACGTAGACTATAAGGTCATTGTCTTCTGTACAACGGCCATG 1876
||||||| | ||| || | ||||||||| ||| | ||||||||||| || |||
Sbjct 993 AAAAAACACATCGCAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATG 1052
Query 1877 GTTACAAAATTAGTGGCTGATCTACTTGGTGAGCTAAAC-TTAAACGTGAGAGAGATCCA 1935
||||||| ||| ||||||||||| |||||| |||||| | |||| ||| |||||||||||
Sbjct 1053 GTTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAA-CGTCAGAGAGATCCA 1111
Query 1936 TTCTAGAAAACCGCAGAGTTACAGGACAAGGGTTTCTAACGAGTTCCGAAAATCCAAGGG 1995
|||||||||||| ||||||||||| || || |||||| | |||||||| || || ||| |
Sbjct 1112 TTCTAGAAAACCACAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCTAAGAG 1171
Query 1996 T-TTGATTCTCGTAACATCTGATGTATCTGCTCGAGGAGTTGATTACCCTGATGTGACCC 2054
| || || || |||||||| |||||||||||||| || |||||||||||||||||| | |
Sbjct 1172 TATT-ATCCTTGTAACATCCGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCAC 1230
Query 2055 TTGTTTTACAGGTTGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAA 2114
| || | ||| | ||||||||| |||||| ||||||||||| || |||||||| ||||
Sbjct 1231 TAGTCGTGCAGATGGGATTGCCATCAGACAGGGAACAATATATCCATAGACTTGGCAGAA 1290
Query 2115 CCGGGCGAAAAGGAAAGGAAGGAGAAGGCATATTGTTGTTGGCACCATGGGAGGAATACT 2174
| ||||| ||||| |||||||||||||| || | ||||||||||| ||||| || || |
Sbjct 1291 CTGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTATT 1350
Query 2175 TTCTATCATCTCTTAAAGATTTACCCATCACTAAGTC-TCCTCTGCCATCAATAGACCCA 2233
||||||| ||| ||||||| || |||||||| ||||| || | | || |||| || | |
Sbjct 1351 TTCTATCTTCTGTTAAAGACTTGCCCATCACAAAGTCGTCTT-TACCGCCAATTGATC-A 1408
Query 2234 -GAAACTGTAAAAAAGGTGCA-AAAGGCGCTT-TGCCATGTCGAGATGAGGAACAAAGAG 2290
|| |||| ||||||||||| ||||| |||| | ||| || || |||| |||||||||
Sbjct 1409 TGAGGCTGTGAAAAAGGTGCAGAAAGG-GCTTAT-CCAAGTGGAAATGACAAACAAAGAG 1466
Query 2291 GCGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAA 2350
||||| |||||||| ||||||||||||||||| || ||||||| ||||| ||||||||
Sbjct 1467 GCGGCATATCAGGCCTGGTTGGGTTACTACAAATCTCAGAAGAAGATTGCAAGAGACAC- 1525
Query 2351 GAC-AGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAATCC-TC 2408
||| || || |||||||| || || |||||||| || || ||||||||| | |||| ||
Sbjct 1526 GACCAGACTGGTGGAGTTAGCCAATGAGTTTAGCCGCAGCATGGGACTT-AGTATCCCTC 1584
Query 2409 CAGCTATACC-A-AAACT-TATCCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTTA 2465
||||||| || | ||| | | || |||| ||||||||||||||||| ||||||||| |||
Sbjct 1585 CAGCTATCCCTATAAA-TGT-TC-TTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTA 1641
Query 2466 GAG 2468
|||
Sbjct 1642 GAG 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93321100250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5