BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63640.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496554 jgi|Araly1|496554|fgenesh2_kg.8__2370__AT5G63640.1 2796 0.0
> Ahg496554 jgi|Araly1|496554|fgenesh2_kg.8__2370__AT5G63640.1
Length=1877
Score = 2796 bits (1514), Expect = 0.0
Identities = 1713/1806 (95%), Gaps = 26/1806 (1%)
Strand=Plus/Plus
Query 124 tct-tcttcttcttcttcttcttcGTTTACGTCTCTGTGAAATGCTCAAGCTGATTAGGG 182
||| |||||||||||| ||||||| || |||| |||||||||||||||||||||||||||
Sbjct 94 TCTGTCTTCTTCTTCTCCTTCTTC-TTCACGTATCTGTGAAATGCTCAAGCTGATTAGGG 152
Query 183 TTTATCAACTTTTTCTCAACTTTCTTGTTATCT-CCTTCGTTATCCTCTCTGTCTTCTCA 241
|||||||||| ||||| ||||||||| |||| | |||||||||||||||| |||||||||
Sbjct 153 TTTATCAACTCTTTCTTAACTTTCTTATTAT-TGCCTTCGTTATCCTCTCCGTCTTCTCA 211
Query 242 GCTTAGCAGCTATTGTGCATTTGAAGCTGTACTCGGAAGAAAAGCCCATAGAAGAGTCAA 301
|||| | |||||||||| ||| ||| |||||| |||||| ||||||||||||| ||||||
Sbjct 212 GCTTTGTAGCTATTGTGTATTCGAATCTGTACGCGGAAGGAAAGCCCATAGAACAGTCAA 271
Query 302 ATATAACAAAAAATGGCTGCGGAGCTTGTAAGTTCTGCAACAAGTGAGAAGCTTGCAGAT 361
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 272 ATATAACAAAATATGGCTGCGGAGCTTGTAAGTTCTGCAACAAGTGAGAAGCTTGCTGAT 331
Query 362 GTGGACTGGGCCAAAAACATTGAGATCTGTGAATTAGCTGCTCGAGATGAAAGGCAAGCA 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GTGGACTGGACCAAAAACATTGAGATCTGTGAATTAGCTGCTCGAGATGAAAGGCAAGCA 391
Query 422 AAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 AAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTA 451
Query 482 TATGCTGTCCAGTTGCTAGAGATGTTGATGAATAATATTGGAGAGAATATTCATAAGCAA 541
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TATGCTGTCCAGTTGCTGGAGATGTTGATGAATAATATTGGAGAGAATATTCATAAGCAG 511
Query 542 GTTATAGATACAGGTGTACTCCCTACGCTTGTGAAGATAGTAAAGAAAAAATCGGATTTG 601
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 512 GTTATAGATACAGGTGTACTCCCTACACTTGTGAAGATAGTAAAGAAAAAATCGGATTTG 571
Query 602 CCTGTAAGAGAGAGGATTTTTCTTCTTCTTGATGCAACTCAAACCTCCCTTGGTGGCGCT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CCTGTAAGAGAGAGGATTTTTCTTCTTCTTGATGCAACTCAAACCTCCCTTGGTGGCGCT 631
Query 662 TCAGGGAAATTCCCTCAGTATTATACAGCATACTATGAATTAGTGAACGCAGGAGTTAAA 721
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 632 TCAGGGAAATTCCCTCAGTATTATACAGCATACTATGATTTAGTGCACGCAGGAGTTAAA 691
Query 722 TTTACTCAGAGGCCTAATGCTACACCAGTCGTGGTCACTGCTCAGGCTGTTCCGAGAAAT 781
||||| ||||| ||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 692 TTTACCCAGAGACCTAATGCTACACCAGTTGTGGTCACTGCTGAAGCTGTTCCGAGAAAT 751
Query 782 ACCCTTAATGAACAACTTGCATCTGCCAGAAATGAGGGGCCTGCTACTACTCAGCAGCGA 841
|| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 752 ACGCTCAATGAACAACTTGCATCTGCTAGAAATGAAGGGCCTGCTACTACTCAGCAGCGA 811
Query 842 GAATCTCAATCTGTCTCTCCTTCGAGTATTTTACAAAAGGCTAGTACTGCATTAGAAATT 901
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 812 GAATCTCAAACTGTCTCTCCTTCGAGCATTTTACAAAAGGCTAGTACCGCATTAGAAGTT 871
Query 902 TTGAAGGAAGTGCTTGACGCAGTCGATTCTCAAAATCCTGAGGGGGCAAAAGATGAGTTT 961
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 TTAAAGGAAGTGCTTGACGCAGTCGATTCTCAAAATCCTGAGGGGGCAAAAGATGAGTTT 931
Query 962 ACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATG 991
Query 1022 ACATCGAGGGATGAAAAAGCAGTTTCTAAAGCAATCGAATTGAATGAGCAACTTCAGAGA 1081
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 992 ACATCGAGGGATGAAAAAGCAGTTTCTAAAGCAATTGAATTGAATGAGCAACTTCAGAGA 1051
Query 1082 ATTCTCAATAGACACGAAGATTTGCTGTCTGGTAGAATCACTGTTCCTAGCAGGTCTACC 1141
|||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1052 ATTCTCAATAGACATGAAGATTTGCTGTCTGGCAGAATCACAGTTCCTAGCAGGTCTACT 1111
Query 1142 ACATCAAATGGATATCATTCCAATCTCGAACCTGTCCGTCCTATCTCAAATGGTGACCAG 1201
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| || |
Sbjct 1112 ACATCCAATGGATATCATTCCAATCTCGAACCTATCCGTCCTATCTCAAACGGTCACAAT 1171
Query 1202 AAACGC-GAGCTAAAGGCTTCTAATGCAAACACCGAATCAAGCAGCTTCATTTCTAACCG 1260
||| || ||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1172 AAA-GCCGAGCTAAAGGCTTCTAATGCAAATACCGAATCAAGCAGCTCCATTTCTAACCG 1230
Query 1261 AGCCCATCTTAAGCTTGAGGAAGAAGATGAGGAAGAGGAGCCTGAGCAGTTATTCAGAAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AGCCCATCTTAAGCTTGAGGAAGAAGATGAGGAAGAGGAGCCTGAGCAGTTATTCAGAAG 1290
Query 1321 ATTGCGAAAAGGGAAAGCTAGAGCAAGGCCTGAGGATGAAGAAGAGCCATCACCTCCACA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 ATTGCGAAAAGGGAAAGCTAGAGCAAGGCCTGAGGATGAAGAAGAGCCATCACCTCCACA 1350
Query 1381 AGGATTGCCTGGATCAGCAATACATAACGAAAGACTTAACCGTCCACTTATCCGTCCTTT 1440
||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1351 AGGCTTACCTGGATCAGCAATCCATAACGAAAGACTTAACCGTCCACTTATTCGTCCTTT 1410
Query 1441 ACCATCAGAGGAGGCATCACGCGGTGGTGATAGCCATTCGCAATCCCCACCTGTTGTGAT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 ACCATCAGAGGAGGCATCACGCGGTGGTGATAGCCATTCGCAATCCCCACCTGTTGTGAT 1470
Query 1501 TCCACCACCACCTGCGAAGCACGTTGAGAGGGAAAAATTCTTCAAGGAGAATAAAGGTGA 1560
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 1471 TCCACCACCACCTGCGAAACACGTTGAGAGGGAAAAATTCTTCAAGGAGAAGAAAGTTGA 1530
Query 1561 CGGTGCCTTGGGTTTACCAGGTCATATGCGAGGCCTTTCTTTGCATAGCCGTGATGGCAG 1620
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1531 CGGTGCCTCAGGTTTACCAGGTCATATGAGAGGCCTTTCTTTGCATAGCCGCGATGGCAG 1590
Query 1621 CAGCTCACGCAGTGGAAGCGTAGACTTCAGTGACTGAAACAA-CCAAAGCTCTCATCATC 1679
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1591 CAGCTCACGCAGTGGAAGCGTAGACTTCAGTGACTGAAACAAACCAAAGCTCTCATCATC 1650
Query 1680 ATATATATGTATTCTTTCACGCTTGTTTCTTTAGGTTTTGTTAATTTACAGATGGGAAAA 1739
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 1651 ATATATATGTATTCTTTCACGCTCGTTTCTTTAGGTTTTGGTAATTTACAGATGG-AAAA 1709
Query 1740 AGTTTGTGTTGTGTGTTGCTGTTATTtctctctctctctctctctttctctctccttcta 1799
|||||||||||||||| |||| |||| |||||||| | || ||||||| | ||
Sbjct 1710 AGTTTGTGTTGTGTGT-GCTG------CTCTATCTCTCTC-C-CT--CTCTCTC-T-CT- 1755
Query 1800 cgtctctAGTGTTGTGAATTTAGAATGTAGCACGATGAGATCTGATTATGTATACGAGTA 1859
| ||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 1756 C-TCT--AGTGTTGTGAATTTAGAATATAGCACCATGAGATCTGGTTATGTATACGAGTA 1812
Query 1860 AAAGGTACTTCCTTTCACTATGTTCAAACCTGAGCTATGTTATTTACAGAGGTTGTTGTT 1919
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 AA-GGTACTTCCTTTCACTATGTTCAAACCTGAGCTATGTTATTTACAGAGGTTGTTGTT 1871
Query 1920 ACTGTT 1925
||||||
Sbjct 1872 ACTGTT 1877
Score = 196 bits (106), Expect = 4e-49
Identities = 117/122 (96%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 AATCTGATTTTAAGGAATTAATCTCTATTTGCCAAAGAAGAGGCGCAAAGGCTCCGtctt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1 AATCTGATTTTAAGGAATTAA--TCTATTTGCCAAAGAAGAGGCGCAAAGGCTCCGTCCT 58
Query 61 ttttcttcttcttgtttctgtgttaccgatctggctctgtcttcttcttcttcttcttct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 59 TTTTCTTCTCCTTGTTTCTGTGTTACCGATCTGGCTCTGTCTTCTTCTTCTCCTTCTTCT 118
Query 121 tc 122
||
Sbjct 119 TC 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5