BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63650.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951172 jgi|Araly1|951172|scaffold_803059.1 1753 0.0
Ahg940352 jgi|Araly1|940352|scaffold_600896.1 1074 0.0
Ahg919903 jgi|Araly1|919903|scaffold_101184.1 603 1e-171
> Ahg951172 jgi|Araly1|951172|scaffold_803059.1
Length=1111
Score = 1753 bits (949), Expect = 0.0
Identities = 1061/1114 (95%), Gaps = 12/1114 (1%)
Strand=Plus/Plus
Query 213 GAGGAAGAAGTGATGGACAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGAAATTTTGGT 272
|||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 9 GAGGAAGAAGAGATGGATAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGGAATTTTGGT 68
Query 273 GTGGCTCGTCTTCTTAGACACAAAGAGACCAAAGAGCTCGTTGCTATGAAATACATTGAG 332
||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct 69 GTGGCTCGTCTTCTTAGACACAAAGAGACTAAAGAACTCGTTGCCATGAAATATATTGAG 128
Query 333 AGAGGTCGCAAGATTGATGAGAATGTGGCAAGAGAGATTATCAATCATAGATCACTTAGG 392
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 129 AGAGGTCGCAAGATTGATGAGAATGTTGCGAGAGAGATTATCAATCATAGATCACTTAGG 188
Query 393 CATCCTAATATCATCAGATTCAAGGAGGTGATTCTGACTCCAACTCATCTTGCAATTGTA 452
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 189 CATCCTAATATCATCAGATTCAAGGAGGTGGTTCTGACTCCAACTCATCTTGCTATTGTA 248
Query 453 ATGGAGTATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGATTCAGT 512
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 ATGGAATATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGATTCAGT 308
Query 513 GAAGCTGAGGCTAGATACTTCTTTCAGCAGCTGATTTGTGGCGTGGATTACTGTCATTCA 572
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 309 GAAGCTGAGGCTAGATACTTCTTTCAGCAGTTGATTTGTGGCGTGGATTACTGTCATTCA 368
Query 573 CTGCAAATATGTCATAGAGATTTGAAGCTTGAGAATACACTGCTTGATGGTAGTCCAGCC 632
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 369 CTGCAAATATGTCATAGAGATTTGAAGCTTGAGAACACACTGCTTGATGGTAGCCCTGCC 428
Query 633 CCGCTTTTGAAAATCTGTGATTTTGGTTACTCCAAGTCATCTCTGCTTCACTCTAGACCT 692
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CCGCTTCTGAAAATCTGTGATTTTGGTTACTCCAAGTCATCTCTGCTTCACTCTAGACCT 488
Query 693 AAATCAACTGTTGGTACTCCAGCTTATATCGCACCTGAAGTTCTTTCCCGAAGAGAATAT 752
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 489 AAATCAACTGTTGGGACTCCAGCTTACATCGCACCTGAAGTTCTTTCCCGAAGAGAATAT 548
Query 753 GACGGAAAGCATGCGGATGTTTGGTCCTGTGGTGTGACTCTTTATGTGATGTTAGTTGGA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 549 GACGGAAAGCATGCGGATGTTTGGTCCTGTGGTGTGACTCTTTATGTGATGTTGGTTGGA 608
Query 813 GGTTATCCGTTTGAAGACCCGGATGATCCGAGAAACTTCAGGAAAACAATCCAACGTATA 872
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 609 GGTTATCCGTTTGAAGACCCCGATGATCCGAGAAACTTCAGGAAAACAATCCAACGTATA 668
Query 873 ATGGCTGTCCAGTACAAGATCCCGGATTACGTTCATATATCGCAGGAGTGCAGACACCTT 932
||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 669 ATGGCTGTCCAGTACAAGATCCCGGATTACGTTCACATATCGCAGGAGTGTAAACACCTT 728
Query 933 CTCTCTCGCATATTTGTCACTAATTCAGCTAAGAGAATCACACTTAAAGAGATCAAGAAG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CTCTCTCGCATATTTGTCACTAATTCAGCTAAGAGAATCACACTTAAAGAGATCAAGAAG 788
Query 993 CATCCATGGTACTTAAAGAACTTGCCAAAGGAGCTTACAGAGCCTGCTCAAGCGGCGTAC 1052
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 789 CATCCATGGTACTTAAAGAACTTGCCAAAGGAGCTTACAGAGTCTGCTCAAGCAGCGTAC 848
Query 1053 TACAAGAGAGAAACCCCAAGCTTTTCCCTCCAAAGCGTAGAGGACATAATGAAGATCGTT 1112
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TACAAGAGAGAAACCACGAGCTTTTCCCTCCAAAGCGTAGAGGACATAATGAAGATCGTT 908
Query 1113 GGAGAAGCCAGGAATCCAGCTCCGTCTTCTAATGCCGTCAAGGGCTTTGATGATGATGAG 1172
|||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 909 GGAGAAGCAAGGAGTCCAGCCCCGTCTTCTAATGCCGTCAAGGGCTTTGATGAAGATGAA 968
Query 1173 GAAGATGTGGAGGACGAGGTTgaagaagaagaagaagaagaagaagaagaggaggaagaa 1232
|||||||||||||||||||| ||||||||||| | ||||| | |||||||| || |
Sbjct 969 GAAGATGTGGAGGACGAGGTGGAAGAAGAAGA-G--GAAGA-G--GAAGAGGAAGA-G-- 1019
Query 1233 gaggaagaggaagaagatgaatacgagaagCATGTTAAAGAGGCCCATTCTTGTCAAGAG 1292
||||| | | ||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1020 GAGGA-G-G-AAGAAGATGAATACGAGAAGCATGTCAAAGAGGCGCATTCTTGCCAAGAT 1076
Query 1293 CCTCCCAAAGCTTAAGAAACTCTCACTCTGTTGT 1326
|| |||||||||||||||||| ||||||||||||
Sbjct 1077 CCCCCCAAAGCTTAAGAAACTTTCACTCTGTTGT 1110
> Ahg940352 jgi|Araly1|940352|scaffold_600896.1
Length=1097
Score = 1074 bits (581), Expect = 0.0
Identities = 865/1004 (86%), Gaps = 12/1004 (1%)
Strand=Plus/Plus
Query 225 ATGGACAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGAAATTTTGGTGTGGCTCGTCTT 284
|||||||||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||
Sbjct 21 ATGGACAAGTATGATGTTGTCAAGGATCTGGGAGCTGGGAATTTCGGTGTGGCTCGCCTT 80
Query 285 CTTAGACACAAAGAGACCAAAGAGCTCGTTGCTATGAAATACATTGAGAGAGGTCGCAAG 344
||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct 81 CTTAGGCACAAGGACACTAAAGAGCTTGTTGCCATGAAATACATCGAGAGAGGCCGCAAG 140
Query 345 ATTGATGAGAATGTGGCAAGAGAGATTATCAATCATAGATCACTTAGGCATCCTAATATC 404
|| |||||||| ||||| |||||||| ||||| || |||||||||| |||||||||||||
Sbjct 141 ATAGATGAGAACGTGGCGAGAGAGATCATCAACCACAGATCACTTAAGCATCCTAATATC 200
Query 405 ATCAGATTCAAGGAGGTGATTCTGACTCCAACTCATCTTGCAATTGTAATGGAGTATGCT 464
||| | |||||||||||||||||||| || ||||||||||| ||||| ||||||||||||
Sbjct 201 ATCCGGTTCAAGGAGGTGATTCTGACACCTACTCATCTTGCTATTGTGATGGAGTATGCT 260
Query 465 TCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGATTCAGTGAAGCTGAGGCT 524
|||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||
Sbjct 261 TCTGGAGGAGAGCTCTTTGATCGAATCTGTACTGCCGGTAGATTTAGTGAAGCTGAGGCT 320
Query 525 AGATACTTCTTTCAGCAGCTGATTTGTGGCGTGGATTACTGTCATTCACT-GCAAATATG 583
|| ||||||||||| |||||||||||||| || || ||||| ||||| || |||||||||
Sbjct 321 AGGTACTTCTTTCAACAGCTGATTTGTGGTGTTGACTACTGCCATTC-CTTGCAAATATG 379
Query 584 TCATAGAGATTTGAAGCTTGAGAATACACTGCTTGATGGTAGTCCAGCCCCGCTTTTGAA 643
||||||||| ||||||||||||| |||||||| ||||| || || || |||||||||||
Sbjct 380 TCATAGAGACCTGAAGCTTGAGAACACACTGCTCGATGGGAGCCCTGCTCCGCTTTTGAA 439
Query 644 AATCTGTGATTTTGGTTACTCCAAGTCATCTCTGCTTCACTCTAGACCTAAATCAACTGT 703
||||||||||||||||||||| ||||||||| | || || ||||| |||||||| |||||
Sbjct 440 AATCTGTGATTTTGGTTACTCTAAGTCATCTATACTACATTCTAGGCCTAAATCGACTGT 499
Query 704 TGGTACTCCAGCTTATATCGCACCTGAAGTTCTTTCCCGAAGAGAATATGACGGAAAGCA 763
||| |||||||| || || ||||||||||||||||| || ||||||||||| || |||||
Sbjct 500 TGGAACTCCAGCATACATAGCACCTGAAGTTCTTTCACGGAGAGAATATGATGGCAAGCA 559
Query 764 TGCGGATGTTTGGTCCTGTGGTGTGACTCTTTATGTGATGTTAGTTGGAGGTTATCCGTT 823
|||||||| ||||| ||||| || || |||||||||||| | ||||||| ||| |||||
Sbjct 560 CGCGGATGTGTGGTCATGTGGCGTAACCCTTTATGTGATGCTGGTTGGAGCTTACCCGTT 619
Query 824 TGAAGACCCGGATGATCCGA-GAAACTTCAGGAAAACAATCCAACGTATAATGGCTGTCC 882
||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||||||| |
Sbjct 620 TGAGGACCCTAATGATCCAAAGAA-CTTCAGGAAAACAATCCAACGTATAATGGCTGTAC 678
Query 883 AGTACAAGATCCCGGATTACGTTCATATATCGCAGGAGTGCAGACACCTTCTCTCTCGCA 942
| |||||||||||||| || || || ||||| ||||| |||| |||||||||||||||||
Sbjct 679 AATACAAGATCCCGGACTATGTACACATATCCCAGGAATGCAAACACCTTCTCTCTCGCA 738
Query 943 TATTTGTCACTAATTCAGCTAAGAGAATCACACTTAAAGAGATCAAGAAGCATCCATGGT 1002
|||| |||||||| || || ||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 739 TATTCGTCACTAACTCCGCAAAGAGAATCACGCTTAAGGAGATCAAGAATCATCCGTGGT 798
Query 1003 ACTTAAAGAACTTGCCAAAGGAGCTTAC-AGAGCCTGCTCAAGCGGCGTACTACAAGAGA 1061
|||| |||||||||||||||||||| | |||| | |||||||| || || |||||||||
Sbjct 799 ACTTGAAGAACTTGCCAAAGGAGCTG-CTAGAGTCGGCTCAAGCAGCATATTACAAGAGA 857
Query 1062 GAAACCCCAAGCTTTTCCCTCCAAAGCGTAGAGGACATAATGAAGATCGTTGGAGAAGCC 1121
|| || | |||| || || |||||||||||||||||||||||||| |||||||||||
Sbjct 858 GACACG--A-GCTTCTCTCTTCAAAGCGTAGAGGACATAATGAAGATAGTTGGAGAAGCA 914
Query 1122 AGGAATCCAGCTCCGTCTTCTAATGCCGTCAAGGGCTTTGA-T--GATGATGAGGAAGAT 1178
|||||||||||||| ||| ||| ||| ||||| ||| | | || | |||||||||
Sbjct 915 AGGAATCCAGCTCCATCTACTAGTGCTGTCAAAAGCTCGGGCTCAGAAGCTGAGGAAGAA 974
Query 1179 GTGGAGGACGAGGTTgaagaagaagaagaagaagaagaagaaga 1222
| ||| || || ||||||| |||| |||||||| ||||||||
Sbjct 975 GAGGAAGAGGACGTTGAAGCTGAAGTGGAAGAAGATGAAGAAGA 1018
> Ahg919903 jgi|Araly1|919903|scaffold_101184.1
Length=1137
Score = 603 bits (326), Expect = 1e-171
Identities = 715/901 (79%), Gaps = 34/901 (4%)
Strand=Plus/Plus
Query 225 ATGGACAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGAAATTTTGGTGTGGCTC-GTCT 283
||||||||||| ||| | ||||| || | || ||||| ||||| || ||||| | | |
Sbjct 23 ATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTCGGAGTGGC-CAGGC- 80
Query 284 TC-T-TA-GACACAAAGAGACCAAAGAGCTCGTTGCTATGAAATACATTGAGAGAGGTCG 340
|| | | | || ||| | | || || || ||||| ||||| ||||| ||| | ||||
Sbjct 81 TCATGAAGGTCA-AAA-ACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGTC- 137
Query 341 C-AAGATTGATGAGAATGTGGCAAGAGAGATTATCAATCATAGATCACTTAGGCATCCTA 399
| |||||||||||||| |||||||||||||| || ||||| ||||||||| | ||||| |
Sbjct 138 CTAAGATTGATGAGAACGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCGA 197
Query 400 ATATCATCAGATTCAAGGAGG-TGAT-TCTGACTCCAACTCATCTTGCAATTG-TAATGG 456
|||| ||| | || ||||||| || | | |||||||||| |||||||| |||| | ||||
Sbjct 198 ATATAATCCGGTTTAAGGAGGTTG-TGT-TGACTCCAACCCATCTTGCCATTGCT-ATGG 254
Query 457 AGTATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGATTCAGTGAAG 516
| |||||| |||| || || || || || | ||||| | |||||| ||||| |||||||
Sbjct 255 AATATGCTGCTGGTGGTGAACTATTCGAGCGTATCTGCAGTGCTGGAAGATTTAGTGAAG 314
Query 517 CTGAGGCTAGATACTTCTTTCAGCAGCTGATTTGTGGCG-TGGATTACTGTCATTC-ACT 574
|||||| ||||||||||| || || || || | || | | | ||| || ||| | | |
Sbjct 315 ATGAGGCGAGATACTTCTTCCAACAACTTATATCAGGTGTTAG-TTATTGCCATGCTA-T 372
Query 575 GCAAATATGTCATAGAGATTTGAAGCTTGAGAATACACTGCTTGATGGTAGTCCAGCCCC 634
||||||||| || |||||| ||||||| |||||||| || || ||||| ||||| || ||
Sbjct 373 GCAAATATGCCACAGAGATCTGAAGCTCGAGAATACGCTCCTGGATGGAAGTCCTGCTCC 432
Query 635 GCTTTTGAAAATCTGTGATTTTGGTTACTCCAAGTCATCTCTGCTTCACTCTAGACCTAA 694
| | |||||||||||||||||||||| |||||||| |||||||| |||||||| || ||
Sbjct 433 ACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCTCTGCTGCACTCTAGGCCCAA 492
Query 695 ATCAACTGTTGGTACTCCAGCTTATATCGCACCTGAAGTTCTTTCCCGAAGAGAATATGA 754
|||||| ||||| |||||||| ||||| |||||||| || ||||| || |||||||||||
Sbjct 493 ATCAACAGTTGGAACTCCAGCGTATATTGCACCTGAGGTCCTTTCTCGGAGAGAATATGA 552
Query 755 CGGAAAGCAT-GCGGATGTTTGGTCCTGTGGTGTGACTCTTTATGTGATGTTAGTTGGAG 813
|| ||| || || ||||| |||||||||||||||||||||||||| ||| | |||||||
Sbjct 553 TGGCAAG-ATGGCTGATGTATGGTCCTGTGGTGTGACTCTTTATGTCATGCTGGTTGGAG 611
Query 814 -GTTATCCGTTTGAAGACCCGGATGATCCGAGAAACTTCAGGAAAACAATCCAACGTATA 872
| || || |||||||||| ||| || || | |||||||||||||||||| ||| |||
Sbjct 612 CG-TACCCATTTGAAGACCAGGAAGACCCCAAAAACTTCAGGAAAACAATACAAAAAATA 670
Query 873 ATGGCTGTCCAGTACAAGATCCCGGATTACGTTCATATATCGCAGGAGTGCAGACACCTT 932
|||||||||||||||||||||||||| ||||| || || || ||||| || | ||| ||
Sbjct 671 ATGGCTGTCCAGTACAAGATCCCGGACTACGTCCACATCTCACAGGATTGTAAACATCTC 730
Query 933 CTCTCTCGCATATTTGTCACTAATTCAGCT-AAGAGAATCAC-ACTTAAAGAGATCAAGA 990
|| || || ||||||||| | |||||| || ||||| || || | || ||| |||||||
Sbjct 731 CTTTCCCGTATATTTGTCGCCAATTCA-CTCAAGAGGATAACCA-TTGCAGAAATCAAGA 788
Query 991 AGCATCCATGGTACTTAAAGAACTTGCCAA-AGGAGCTTACAGAGCCTGCTCAAGCGGCG 1049
| || ||||||| | | ||||| ||||||| || | || |||||| | |||||||| ||
Sbjct 789 AACACCCATGGTTCCTGAAGAATTTGCCAAGAGAA-CTCACAGAGACAGCTCAAGCTGCA 847
Query 1050 TACTACAAGAGAGA-AACCCCAAGCTTTTCCCTCCAAAGC-GTAGAGGACATAATGAAGA 1107
|| | ||||| ||| ||||| || ||| |||||||| | | || || || || |||||||
Sbjct 848 TATTTCAAGAAAGAGAACCC-AACCTTCTCCCTCCAGA-CTGTTGAAGAGATCATGAAGA 905
Query 1108 T 1108
|
Sbjct 906 T 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5