BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63660.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918148 jgi|Araly1|918148|Al_scaffold_0008_2899                    327    1e-89


> Ahg918148 jgi|Araly1|918148|Al_scaffold_0008_2899
Length=222

 Score =  327 bits (177),  Expect = 1e-89
 Identities = 207/222 (93%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGAACAAGTTTTTCGCTGCATTCTTCTTGCTTCTTGTCCTCTTCTCATCTCAGGAG  60
            |||||||||||||||||| |||| |||||||||||||| |||||| |||||| ||||| |
Sbjct  1    ATGGAGAACAAGTTTTTCACTGCCTTCTTCTTGCTTCTCGTCCTCATCTCATGTCAGGGG  60

Query  61   ATCATTGGGGGTGAAGGAAGGACATGCCAATCAAAGAGCCACCACTTCAAATACATGTGT  120
            ||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  61   ATCATTGGGAGTGATGGAAGGACATGTCAGTCAAAGAGCCACCACTTCAAATACATGTGT  120

Query  121  ACGTCCAACCACAACTGTGCCATAGTTTGCCGTAACGAGGGATTTTCCGGTGGTCGCTGC  180
            || |||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct  121  ACCTCCAGCCACAACTGTGCCATAGTCTGCCGTAACGAGGGCTTTTCCGGTGGTCGGTGC  180

Query  181  CATGGCTTCCATCGCCGTTGCTACTGCACCCGCCTTTGCTAA  222
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CATGGCTTCCATCGCCGTTGCTACTGCACCCGCCTTTGCTAA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5