BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63670.1
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951176 jgi|Araly1|951176|scaffold_803063.1 645 0.0
Ahg940349 jgi|Araly1|940349|scaffold_600893.1 377 4e-104
> Ahg951176 jgi|Araly1|951176|scaffold_803063.1
Length=392
Score = 645 bits (349), Expect = 0.0
Identities = 376/389 (97%), Gaps = 1/389 (0%)
Strand=Plus/Plus
Query 14 GAGAGAAAACAAACGATAATGGGAAGCGCACCAGCTCAGATTCCGACTAGCTTCGGCCAT 73
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 GAGAGAAAACAAACGATAATGGGAAGCGCACCAGCTCAGATTCCGACTAGTTTCGGCCAT 62
Query 74 GAGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGTTTAGAGACGCT 133
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 63 GAGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGTTCAGGGACGCT 122
Query 134 GGTTGCGAGAATTGTCCTTTCTTCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTC 193
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGTTGCGAGAATTGCCCTTTCTTCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTC 182
Query 194 ACTACCCCTAATTTCAATGGTATAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCGGCT 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 183 ACTACCCCTAATTTCAATGGTATAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCTGCT 242
Query 254 AGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACACTTGCTGTCTCAGAGCCA 313
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 243 AGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCGGTCTCAGAGCCA 302
Query 314 CTCCCTGAGGAAATGCAGCACTTATGCCAAGAGGAGCGTGTACAATATGTTCTGCCGAAA 373
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 303 CTCCCTGAGGAAATGCAGCACCTATGCCAAGAAGAGCGTGTACAATATGTTCTGCCGAAA 362
Query 374 CGCATGTGAAGAAA-TCTATCACGATGAA 401
|||||||||||||| || |||| || |||
Sbjct 363 CGCATGTGAAGAAAATCCATCAAGAAGAA 391
> Ahg940349 jgi|Araly1|940349|scaffold_600893.1
Length=391
Score = 377 bits (204), Expect = 4e-104
Identities = 303/351 (86%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 36 GAAGCGCACCAGCTCAGATTCCGACTAGCTTCGGCCATGAGCTTAGGGCTTGTCTTCGTT 95
|||||| || || ||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct 27 GAAGCG--CCTGCCCAGATTCCGACGAGTTTCGGCCACGAGCTCAGGGCTTGTCTTCGAT 84
Query 96 GCCGACTCGTCAAGACCTATGACCAGTTTAGAGACGCTGGTTGCGAGAATTGTCCTTTCT 155
|||| |||||||||||||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 85 GCCGCCTCGTCAAGACCTACGATCAGTTTAGGGACTCTGGTTGCGAGAATTGTCCTTTCT 144
Query 156 TCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTCACTACCCCTAATTTCAATGGTA 215
|||| |||||||| |||||||| |||||||| || || || |||||||||||||||||||
Sbjct 145 TCAAAATGGAAGACGATCATGAACGTATCGTCGATGTTACAACCCCTAATTTCAATGGTA 204
Query 216 TAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCGGCTAGGTGGTTAAGAATCGGGAAGT 275
|||| ||| ||||||||||| | ||||| ||||| || || ||||||||||| |||||||
Sbjct 205 TAATATCTATGATGGATCCACGCAGAAGTTGGGCAGCAAGATGGTTAAGAATAGGGAAGT 264
Query 276 TTGCTCCTGGTTGCTACACACTTGCTGTCTCAGAGCCACTCCCTGAGGAAATGCAG-CAC 334
||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||| | |
Sbjct 265 TTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAGGCACTCCCAGAAGAAATGCAGTC-C 323
Query 335 TTATGCCAAGAGG-AGCGTGTACAATATGTTCTGCCGAAACGCATGTGAAG 384
|||||||| | | | || || || || |||| ||| |||||||| |||||
Sbjct 324 ATATGCCAACAAGTA-CGGGTGCAGTACGTTCCGCCCAAACGCATTTGAAG 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20565862471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5