BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63680.1
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951177 jgi|Araly1|951177|scaffold_803064.1 2604 0.0
Ahg487699 jgi|Araly1|487699|fgenesh2_kg.6__833__AT5G08570.1 1609 0.0
> Ahg951177 jgi|Araly1|951177|scaffold_803064.1
Length=1573
Score = 2604 bits (1410), Expect = 0.0
Identities = 1515/1567 (97%), Gaps = 2/1567 (0%)
Strand=Plus/Plus
Query 107 TTTTTGGAGATTTACAAAAATGTCGAACATAGACATAGAAGGAATATTGAAGGAGCTACC 166
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2 TTTTTGGAGATTTACGAAAATGTCAAACATAGACATAGAAGGGATATTGAAGGAGCTACC 61
Query 167 TAATGATGGGAGGACTCCTAAGACTAAGATCGTTTGTACATTAGGTCCTGCGTCTAGGTC 226
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 62 TAATGATGGGAGGACTCCTAAGACTAAGATCGTTTGTACTTTAGGTCCTGCGTCTCGGTC 121
Query 227 TGTGACAATGATTGAGAAGCTTCTTAAAGCAGGCATGAATGTAGCTCGATTCAATTTCTC 286
|||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 122 TGTGACCATGATTGAGAAGCTTCTAAAAGCCGGCATGAATGTTGCTCGATTCAATTTCTC 181
Query 287 TCACGGAAGCCATGAGTACCATCAGGAGACTCTTGACAATCTCCGCACCGCTATGCAGAA 346
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCATGGAAGCCATGAGTACCATCAGGAGACTCTTGACAATCTCCGCACCGCTATGCAGAA 241
Query 347 TACCGGCATTCTCGCTGCTGTTATGCTTGATACAAAGGGGCCTGAGATTCGTACCGGTTT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TACCGGCATTCTCGCTGCTGTTATGCTTGATACAAAGGGGCCTGAGATTCGTACCGGTTT 301
Query 407 CTTGAAAGATGGGAACCCTATACAACTAAAGGAAGGCCAAGAGATCACAATTACCACTGA 466
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 302 CTTGAAAGATGGGAACCCTATACAACTAAAGGAAGGTCAGGAGATCACAATCACCACTGA 361
Query 467 TTATGACATCAAGGGCGATGAGAAAACGATTTCCATGAGCTACAAAAAGCTCCCAGTGGA 526
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 362 TTATGACATCAAGGGCGATGAGAAAACGATTTCCATGAGCTACAAAAAGCTTCCAGTGGA 421
Query 527 TGTGAAGCCCGGAAATACCATACTATGTGCAGATGGAAGCATAAGTCTTGCTGTCGTGTC 586
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGTGAAGCCCGGCAATACCATTCTATGTGCAGATGGAAGCATAAGTCTTGCTGTCGTGTC 481
Query 587 ATGTGATCCAAACG-CTGGGACTGTTATATGTCGATGTGAAAATACAGCCATGCTAGGTG 645
|||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 482 ATGTGATCCAAA-GTCTGGGACTGTTATATGTCGATGTGAAAATACAGCGATGCTAGGTG 540
Query 646 AAAGAAAAAATGTGAATCTCCCAGGTGTTGTTGTTGATCTCCCCACATTGACTGACAAGG 705
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGAAAGAATGTGAATCTTCCTGGTGTTGTTGTTGATCTCCCCACATTGACTGACAAGG 600
Query 706 ATGTAGAAGATATTCTTAAATGGGGTGTTCCAAACAACATCGATATGATTGCTCTTTCAT 765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 ATGTAGAAGATATTCTTAAATGGGGTGTTCCAAACAACATCGATATGATTGCTCTTTCGT 660
Query 766 TTGTTCGCAAAGGTTCAGATCTTGTTAATGTCCGGAAAGTCCTTGGATCACATTCCAAGA 825
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 661 TTGTTCGCAAAGGTTCAGATCTTGTTAATGTCCGGAAAGTACTTGGATCACATTCTAAGA 720
Query 826 GTATAATGTTGATGTCGAAGGTTGAGAACCAAGAAGGAGTCCTGAATTTCGATGAGATTT 885
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 721 GTATAATGTTGATGTCGAAGGTTGAGAACCAGGAAGGAGTGCTGAATTTCGATGAGATCT 780
Query 886 TGCGTGAAACTGATGCATTCATGGTTGCTCGTGGTGATCTTGGGATGGAGATTCCGATAG 945
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 781 TGCGTGAAACTGATGCATTCATGGTTGCCCGTGGTGATCTCGGGATGGAGATTCCGATAG 840
Query 946 AGAAGATCTTCTTGGCTCAGAAGATGATGATCTACAAGTGTAACCTTGCAGGTAAACCGG 1005
||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 841 AGAAGATTTTCTTGGCTCAAAAGATGATGATCTACAAGTGTAACCTTGCGGGTAAACCAG 900
Query 1006 TGGTCACAGCCACTCAAATGCTCGAGTCGATGATCAAATCACCACGGCCAACACGAGCAG 1065
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 901 TGGTCACAGCCACTCAAATGCTCGAGTCTATGATCAAATCACCACGGCCAACACGAGCTG 960
Query 1066 AAGCCACAGATGTAGCAAACGCAGTTCTCGATGGCACTGACTGTGTGATGCTTAGCGGAG 1125
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 AAGCCACAGATGTAGCAAACGCAGTTCTCGATGGCACTGACTGTGTGATGCTCAGCGGAG 1020
Query 1126 AAAGTGCTGCAGGAGCTTACCCTGAAATAGCAGTGAAAACAATGGCTAAAATCTGCATCG 1185
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGTGCTGCAGGAGCTTACCCGGAAATAGCAGTGAAAACAATGGCTAAAATCTGCATCG 1080
Query 1186 AGGCGGAATCATCGCTTGACTACAACACAATCTTCAAGGAGATGATTAGAGCAACTCCAC 1245
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1081 AGGCGGAATCATCGCTTGACTACAACACAATCTTCAAGGAAATGATTAGAGCAACTCCGC 1140
Query 1246 TTCCAATGAGCACTCTTGAGAGTCTTGCATCATCAGCTGTACGAACGGCAAACAAAGCCA 1305
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1141 TTCCAATGAGCACACTTGAGAGTCTTGCATCATCAGCTGTACGAACTGCAAACAAAGCCA 1200
Query 1306 AAGCCAAACTCATCATCGTGTTGACCAGAGGAGGTACAACAGCTAAACTGGTGGCCAAGT 1365
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1201 AAGCCAAACTCATCATCGTGTTGACCCGAGGAGGTACAACAGCTAAACTGGTGGCTAAGT 1260
Query 1366 ATAGACCGGCTGTTCCAATTCTATCGGTGGTTGTTCCGGTCTTCACCAGCGATACGTTTA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1261 ATAGACCGGCTGTTCCAATTCTATCGGTGGTTGTTCCGGTCTTCACCAGCGATACCTTTA 1320
Query 1426 ACTGGAGTTGCAGCGATGAGTCACCGGCGAGGCATAGTTTGATATATAGAGGTCTGATAC 1485
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1321 ACTGGAGTTGCAGCGATGAGTCACCGGCAAGGCATAGTTTGATATATAGAGGTCTGATTC 1380
Query 1486 CGGTTTTGGGTGAAGGATCTGCAAAAGCAACTGATAGTGAATCCACAGAGGAGATTATTG 1545
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1381 CGGTTTTGGGTGAAGGATCTGCAAAAGCAACTGATAGTGAATCTACAGAAGAGATTATTG 1440
Query 1546 AATCTGCTTTGAAGTCAGCGACAGAGAAAGGACTGTGTAACCATGGTGATGCTGTGGTGG 1605
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGTCTGCTTTGAAGTCAGCGACAGAGAAAGGACTGTGTAACCATGGTGATGCTGTGGTGG 1500
Query 1606 CTCTGCACCGTATTGGAGCTGCTTCGGTTATCAAGATCTGTGTGGTGAAGTGATTTTTCT 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1501 CTCTGCACCGTATTGGAGCTGCTTCGGTTATCAAGATCTGTGTGGTGAAGTGATTATGCT 1560
Query 1666 ACTAAAT 1672
|||||||
Sbjct 1561 ACTAAAT 1567
> Ahg487699 jgi|Araly1|487699|fgenesh2_kg.6__833__AT5G08570.1
Length=1781
Score = 1609 bits (871), Expect = 0.0
Identities = 1326/1548 (86%), Gaps = 22/1548 (1%)
Strand=Plus/Plus
Query 122 AAAAATGTCGAACATAGACATAGAAGGAATATTGAAGGAGCTACCTAATGATGGGAGGAC 181
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 112 AAAAATGTCGAACATAGACATAGAAGGGATATTGAAGGAGCTACCTAATGATGGCAGGA- 170
Query 182 T-CCTAAGACTAAGATCGTTTGTACATTAGGTCCTGCGTCTAGGTCTGTGACAATGATTG 240
| || ||||| ||||| ||||| || ||||| || || ||| || |||| | ||||| |
Sbjct 171 TCCCAAAGACGAAGATAGTTTGCACTTTAGGACCAGCTTCTCGGACTGTTTCCATGATCG 230
Query 241 AGAAGCTTCTT-AAAGCAGGCATGAATGTAGCTCGATTCAATTTCTCTCACGGAAGCCAT 299
| |||||| || ||||| || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct 231 AAAAGCTT-TTGAAAGCCGGTATGAATGTCGCTCGCTTCAACTTCTCACATGGAAGCCAT 289
Query 300 GAGTACCATCAGGAGACTCTTGACAATCTCCGCACCGCTATGCAGAATACCGGCATTCTC 359
|| |||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 290 GAATACCATCAAGAGACACTCGACAACCTCCGCACCGCTATGCATAATACCGGCATTCTC 349
Query 360 GCTGCTGTTATGCTTGATACAAAGGGGCCTGAGATTCGTACCGGTTTCTTGAAAGATGGG 419
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 350 GCTGCTGTCATGCTTGATACTAAGGGACCTGAGATTCGTACTGGTTTCTTGAAAGATGGG 409
Query 420 AACCCTATACAACTAAAGGAAGGCCAAGAGATCACAATTACCACTGATTATGACATCAAG 479
|||||||||||||| |||||||| |||||||| || || ||||||||||||||||| |||
Sbjct 410 AACCCTATACAACTGAAGGAAGGTCAAGAGATTACTATAACCACTGATTATGACATTAAG 469
Query 480 GGCGATGAGAAAACGATTTCCATGAGCTACAAAAAGCTCCCAGTGGATGTGAAGCCCGGA 539
|| || ||| |||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 470 GGAGACGAGTCAACGATATCCATGAGCTATAAAAAGCTGCCTTTGGATGTGAAGCCCGGA 529
Query 540 AATACCATACTATGTGCAGATGGAAGCATAAGTCTTGCTGTCGTGTCATGTGATCCAAAC 599
|| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 530 AACACCATACTCTGTGCAGATGGAAGCATAAGTCTAGCTGTCTTGTCATGTGATCCTGA- 588
Query 600 G-CTGGGACTGTTATATGTCGATGTGAAAA-TACAGCCATGCTAGGTGAAAGAAAAAATG 657
| |||| || |||| || || |||||||| | | || ||||| ||||||||||| ||||
Sbjct 589 GTCTGGAACGGTTAGGTGCCGGTGTGAAAACT-CGGCGATGCTTGGTGAAAGAAAGAATG 647
Query 658 TGAATCTCCCAGGTGTTGTTGTTGATCTCCCCACATTGACTGACAAGGATGTAGAAGATA 717
||||||| || || |||||||||||||| ||||| ||||| || |||||| | |||||||
Sbjct 648 TGAATCTTCCTGGCGTTGTTGTTGATCTTCCCACTTTGACAGATAAGGATATTGAAGATA 707
Query 718 TTCTTAAATGGGGTGTTCCAAACAACATCGATATGATTGCTCTTTCATTTGTTCGCAAAG 777
|||| ||||||||||| |||| ||||||||||||||||||||| ||||| || ||||
Sbjct 708 TTCTCGGTTGGGGTGTTCCGAACAGCATCGATATGATTGCTCTTTCGTTTGTCCGTAAAG 767
Query 778 GTTCAGATCTTGTTAATGTCCGGAAAGTCCTTGGATCACATTCCAAGAGTATAATGTTGA 837
|||| |||||||||||||||||||| || |||||||| ||| | || || |||||| |||
Sbjct 768 GTTCGGATCTTGTTAATGTCCGGAAGGTTCTTGGATCTCATGCTAAAAGCATAATGCTGA 827
Query 838 TGTCGAAGGTTGAGAACCAAGAAGGAGTCCTGAA-TTTCGATGAGATTTTGCGTGAAACT 896
|||| |||||||||||||| |||||||| | || ||| |||||||| |||||||||||
Sbjct 828 TGTCAAAGGTTGAGAACCAGGAAGGAGTGATTAACTTT-GATGAGATCTTGCGTGAAACA 886
Query 897 GATGCATTCATGGTTGCTCGTGGTGATCTTGGGATGGAGATTCCGATAGAGAAGATCTTC 956
||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 887 GATGCGTTCATGGTTGCCCGTGGTGATCTCGGGATGGAGATTCCAATAGAGAAGATCTTC 946
Query 957 TTGGCTCAGAAGATGATGATCTACAAGTGTAACCTTGCAGGTAAACCGGTGGTCACAGCC 1016
||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 947 TTGGCGCAAAAGTTGATGATCTACAAGTGTAACCTTGCTGGTAAACCGGTGGTCACAGCT 1006
Query 1017 ACTCAAATGCTCGAGTCGATGATCAAATCACCACGGCCAACACGAGCAGAAGCCACAGAT 1076
||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 1007 ACTCAGATGCTGGAGTCAATGATCAAATCACCTCGGCCAACCCGAGCTGAAGCCACAGAT 1066
Query 1077 GTAGCAAACGCAGTTCTCGATGGCACTGACTGTGTGATGCTTAGCGGAGAAAGTGCTGCA 1136
|| ||||| || ||||| ||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1067 GTTGCAAATGCTGTTCTTGATGGCACTGACTGTGTGATGCTTAGCGGTGAGAGTGCAGCA 1126
Query 1137 GGAGCTTACCCTGAAATAGCAGTGAAAA-CAATGGCTAAA-ATCTGCATCGAGGCGGAAT 1194
|||||||| ||||||||||| |||||| || |||| ||| |||||||| || || ||||
Sbjct 1127 GGAGCTTATCCTGAAATAGCTGTGAAAGTCA-TGGC-AAAGATCTGCATTGAAGCCGAAT 1184
Query 1195 CATCGCTTGACTACAACACAATCTTCAAGGAGATGATTAGAGCAACTCCACTTCCAATGA 1254
| |||||||| || |||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 1185 CCTCGCTTGATTATAACACAATCTTCAAAGAGATGATCCGAGCAACTCCGCTTCCAATGA 1244
Query 1255 GCACTCTTGAGAGTCTTGCATCATCAGCTGTACGAACGGCAAACAAAGCCAAAGCCAAAC 1314
|| | || ||||||||||| ||||| |||||||| || || |||||||| | || ||||
Sbjct 1245 GCCCACTCGAGAGTCTTGCGTCATCCGCTGTACGGACTGCTAACAAAGCGAGGGCGAAAC 1304
Query 1315 TCATCATCGTGTTGAC-CAGAGGAGGTACAACAGCTAAACTGGTGGCCAAGTATAGACCG 1373
||||||| |||||||| | | |||||| |||| ||||| || ||||| || || ||||||
Sbjct 1305 TCATCATTGTGTTGACAC-GTGGAGGTTCAACCGCTAACCTTGTGGCTAAATACAGACCG 1363
Query 1374 GCTGTTCCAATTCTATCGGTGGTTGTTCCGGTCTTCACCAGC-GATACGTTTAACTGGAG 1432
|||||||| ||||| || |||||||| |||||| | |||| | ||| | ||| ||||| |
Sbjct 1364 GCTGTTCCGATTCTGTCAGTGGTTGTCCCGGTCATGACCA-CTGATTCCTTTGACTGG-G 1421
Query 1433 -TTGCAGCGATGAGTCACCGGCGAGGCATAGTTTGATATATAGAGGTCTGATACCGGTTT 1491
||| || || |||||||| || ||||||||| ||||||| |||||||| || || | |
Sbjct 1422 CTTGTAGTGACGAGTCACCTGCAAGGCATAGTCTGATATACAGAGGTCTAATCCCTATGT 1481
Query 1492 TGGGTGAAGGATCTGCAAAAGCAACTGATAGTGAATCCACAGAGGAGATTATTGAATCTG 1551
||| ||||||||||||||| ||||| || |||||| |||| || | || |||||| |||
Sbjct 1482 TGGCTGAAGGATCTGCAAAGGCAACAGACAGTGAAGCCACGGAAGTTATCATTGAAGCTG 1541
Query 1552 CTTTGAAGTCAGCGACAGAGAA-AGGACTGTGTAACCATGGTGATGCTGTGGTGGCTCTG 1610
|| ||||||| || ||| | || ||||||||| |||||||||||||| || ||||| ||
Sbjct 1542 CTCTGAAGTCGGCTACACA-AAGAGGACTGTGCAACCATGGTGATGCAGTCGTGGCACTA 1600
Query 1611 CACCGTATTGGAGCTGCTTCGGTTATCAAGATCTGTGTGGTGAAGTGA 1658
||||||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 1601 CACCGTATTGGAGCTGCCTCAGTTATTAAGATCTGTGTGGTAAAGTGA 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70619314230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5