BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63690.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951178 jgi|Araly1|951178|scaffold_803065.1                        623    3e-178


> Ahg951178 jgi|Araly1|951178|scaffold_803065.1
Length=458

 Score =  623 bits (337),  Expect = 3e-178
 Identities = 393/420 (94%), Gaps = 3/420 (1%)
 Strand=Plus/Plus

Query  1    ATGCAATTGTTTCTCAAGGATATAGTTCCAGCGGCGCAGAACAACATAGACACGCGTTTC  60
            ||||| |||||||||||||| |||||||| || ||||||||||||||| |||| ||||||
Sbjct  22   ATGCAGTTGTTTCTCAAGGACATAGTTCCCGCAGCGCAGAACAACATAAACACACGTTTC  81

Query  61   ATCATCCTCGACAAAGCCAAATCGTCTGCGGCAAACGGGAAGAATTATTGTATTGCGTTG  120
            ||||| || ||||||||||||||| | ||||||||||||||| |  ||||||| ||||||
Sbjct  82   ATCATACTAGACAAAGCCAAATCGCCGGCGGCAAACGGGAAG-A--ATTGTATCGCGTTG  138

Query  121  GCGGCGGATGAAACGGCTGCGGTTCACATACAGCTGTGGGGAGATGAGTGCGACGCGTTC  180
            |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct  139  GCGGCGGATGAAACGGCTGCGGTTCACATACAGCTGTGGGGAGATGAGTGTGATGCTTTC  198

Query  181  GAGGCAGGAGATATCGTGAAGCTCACCAATGGGATTTTCTCATACGTGCGTAACAGTGGA  240
            ||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct  199  GAGGCGGGAGATATCGTGAAGCTCACCAATGGGATATTCTCATACGTGCGGAATAGTGGA  258

Query  241  CTTATTCTCAGAGCTGGGAAGCGTGGGAAGATGGAGAAGATGGGAGAGTTCACGGTTGCG  300
            ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct  259  CTTATTCTCAGAGCTGGAAAACGTGGGAGGATGGAGAAGATGGGAGAGTTCACGGTTGCG  318

Query  301  TTTGTCGAAACGCCAAACATTAGTGAGATCCAATGGATTCCTGATCCTGAGAATCCCAAA  360
            ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  319  TTTGTGGAAACGCCAAACATTAGTGAGATCCAATGGAATCCTGATCCTGAGAATCCCAAA  378

Query  361  CGCTATATTCAGAGCGGCGTCGTTTCAGCTTATTCCCGTATCTTCCCTCCTTTGCCTTGA  420
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  379  CGCTATATTCAGAGCGGCGTCGTTTCTGCTTATTCCCGTATCTTCCCTCCTTTGCCTTGA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5