BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63700.1
Length=2026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332593 jgi|Araly1|332593|fgenesh1_pm.C_scaffold_8001936 2494 0.0
> Ahg332593 jgi|Araly1|332593|fgenesh1_pm.C_scaffold_8001936
Length=1707
Score = 2494 bits (1350), Expect = 0.0
Identities = 1496/1567 (95%), Gaps = 8/1567 (1%)
Strand=Plus/Plus
Query 16 AATGTAGTGGAGATTTTGGATGATGAGGAGGAGGATGAGAAGGAGTGTGAGGATTGGTGC 75
||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct 7 AATGTAGTGGAGATTGTGGAGGAGGAGGAGGAGGATGAGAAGGAGTGTGAGGATTGGTGC 66
Query 76 TTTATCTGTAAAGATGGTGGAAACCTAATGCTCTGTGACTTCAAAGACTGTCCAAAAGTT 135
|| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 67 TTCATCTGCAAAGACGGTGGAGACCTAATGCTCTGTGACTTCAAAGACTGTCCAAAAGTA 126
Query 136 TATCATGAAAGTTGCGTTGAAAAGGATAGCTCAGCAAGCAAGAATGGAGACTCGTATATC 195
|||||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 127 TATCATGAGAGTTGCGTTGAAAAGGGTAGCGCAACAAGCAAGAATGGAGACTCGTATATC 186
Query 196 TGTATGTGGCACAGTTGCTACTTGTGTAAGAAAACACCAAAGCTATGCTGCCTTTGTTGC 255
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 187 TGTATGTGGCACAGTTGCTACTTGTGTAAGAAGACACCAAAGCTATGCTGCCTCTGTTGC 246
Query 256 TCACATGCTGTATGTGAAGGCTGTGTCACTCATGCTGAGTTTATTCAACTTAAAGGGGAT 315
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 247 TCACATGCTGTATGTGAAGGCTGTGTTACTCATGCTGAGTTTATTCAACTTAAAGAGAAT 306
Query 316 AAAGGGTTATGCAATCAATGCCAGGAGTATGTCTTTGCTTTAGAAGAAATTCAAGAATAT 375
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 307 AAAGGGTTATGCAATCAATGCCAGGAGTATGTATTTGCTTTAGAAGAAATTCAAGAGTAT 366
Query 376 GATGCTGCTGGGGATAAGCTTGACTTGACAGATCGGAATACATTTGAGTGTCTGTTTCTT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GATGCTGCTGGGGATAAGCTTGACTTGACAGATCGGAATACATTTGAGTGTCTGTTTCTT 426
Query 436 GAGTATTGGGAAATTGCGAAAAAACAAGAAGGTCTAACTTTTGACGATGTCCGCAAGGTC 495
|||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 427 GAGTATTGGGAAATTGTTAAAAAACAAGAAGATCTAACTTTTGACGAGGTCCGCAATGTC 486
Query 496 TGCGCTTCAAAGCCACAAAAGAAAGGTGTCAAGTCAAAGTACAAAGATGATCCCAAATTT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TGCGCTTCAAAGCCACAAAAGAAAGGTGTCAAGTCAAAGTACAAAGATGATCCCAAATTT 546
Query 556 TCGCTTGGTGATGTCCACACTTCAAAGTCACAAAAGAAAGGCGACAAGCTGAAGAACAAA 615
|||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 547 TCGCTTGGCGATGTCCACACTTCAAAGTCACGAAAGAAAGGCGACAAGCTGAAGTACAAA 606
Query 616 GATGATCCCAAATTTGCGCTTGGTGATGCCCACACTTCAAAGTCAGGAAAGAAAGGCGTC 675
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 607 GATGATCCCAAATTTCCGCTTGGTGATGTCCACACTTCAAAGTCAGGAAAGAAAGGCGTC 666
Query 676 AAGCTGAAGAACAAAGATGATCCCAAATTTTTAGTATCTGACCATGCGGTTGAAGATGCA 735
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 667 AAGCTGAAGAACAAAGATGATCCCAAATTTTCCCTATCTGACCATGCGGTAGAGGATGCA 726
Query 736 GTTGATTATAAAA-AGGTTGGCAA-AAACAAGAGAATGGAGTTTATCAGATGGGGTTCAA 793
||||||||||||| | || ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 727 GTTGATTATAAAACA-GTGGGCAAGAAA-AAGAGAATGGAGTTTATCAGATGGGGTTCAA 784
Query 794 AGCCTCTCATTGATTTCCTAACGTCCATAGGGGAAGACACCAGAGAGGCAATGTCACAAC 853
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 785 AGCCCCTCATTGATTTCCTAACGTCCATAGGGGAAGACACCAGAGACGCAATGTCACAAC 844
Query 854 ATAGTGTTGAGTCAGTTATCCGCAGGTACATTCGTGAGAAAAACCTGCTTGACCGTGAAA 913
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 ATAGTGTGGAGTCAGTTATCCGCAGGTACATTCGTGAGAAAAACCTGCTTGACCGTGAAA 904
Query 914 AGAAGAAGAAAGTTCATTGTGATGAGAAGCTGTACTCTATCTTCAGGAAAAAGTCTATAA 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 905 AGAAGAAGAAAGTTCATTGTGATGAGAAGCTGTACTCTATCTTCAGGAAAAAGTCTGTAA 964
Query 974 ATCAGAAAAGGATTTATACACTTTTGAATACTCACCTGAAAGAAAACCTTGATCAGGTGG 1033
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 965 ATCAGAAAAGGATTTATACACTTTTAAATACTCACCTGAAAGAAAACCTTGATCAGGTGG 1024
Query 1034 AGTATTTCACACCTTTGGAACTTGGCTTCATTGaaaa-aaaTGAAAAGCGATTCAGTGAA 1092
||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||
Sbjct 1025 AGTATTTCACACCTTTGGAACCTGGCTTCAGTGAAAAGAAA-GAAAAGCGATTCAGTGAA 1083
Query 1093 AAGAATGATAAGGTTATGATGCCGTGCAAGAAGCAAAAAACAGAAAGTTCAGATGACGAA 1152
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1084 AAGAATGATGAGGTTTTGATGCCGTGCAAGAAGCAAAAAACAGAAAGTTCAGATGAGGAA 1143
Query 1153 ATTTGTGAGAAGGAAGTGCAACCTGAAATGCGAGCAACTGGTTTCGCCACGATCAATGCA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 ATTTGTGAGAAGGAAGTGCAACCTGAAATGCGAGCAACTGGTTTCGCCACGATCAATGCA 1203
Query 1213 GATAATCTAAAGCTTGTTTATCTACGTAAGAGCTTAGTCTTAGAGTTGTTGAAGCAGAAT 1272
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1204 GATAATATAAAGCTTGTTTATCTACGTAAGAGCTTAGTCGTAGAGTTGTTGAAGCAGAAT 1263
Query 1273 GATAGCTTTGTGGACAAAGTGGTGGGAAGCTTTGTGAAAGTGAAGAATGGCCCTAGGGAC 1332
|| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1264 GAAAGATTTGTGGACAAAGTGGTGGGAAGCTTTGTGAAACTGAAGAATAACCCTAGGGAC 1323
Query 1333 TTTATGGCGTACCAGATCTTGCAGGTTACAGGCATTAAAAATGCTGATGATCAGAGTGAG 1392
||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1324 CTTATGGCTTACCAGATCTTGCAGGTTACAGGCATTAAAACTGCTGATGACCAGAGTGAG 1383
Query 1393 GGCGTGCTTCTTCATGTTTCTGGTATGGCAAGTGGTGTTAGCATTTCCAAGCTGGATGAT 1452
|| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1384 GGAGTGCTTCTTCATGTTGCTGGTATGGCAAGTGGTGTTAGCATTTCCAAGTTGGATGAT 1443
Query 1453 TCTGACATAAGAGAGGAAGAGATTAAAGATTTGAAGCAAAAAGTGATGAATGGTCTTCTG 1512
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1444 TCTGACATAAGCGAGGAAGAGATTAAAGATTTGAAGCAAAAAGTGATGAATGGCCTTCTG 1503
Query 1513 AGACAGACAACTGTTGTGGAGATGGAGCAGAAGGCTAAGGCTCTCCAT-TATGATATAAC 1571
|||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1504 AGACAGCCAACAGTTGTGGAGATGGAGCAGAAGGCTAAGGCTCTCCATGT-TGATATAAC 1562
Query 1572 AAAACAT 1578
|||||||
Sbjct 1563 AAAACAT 1569
Score = 195 bits (105), Expect = 1e-48
Identities = 127/138 (92%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1672 AGAGAACTTCTGGAGAAACCTTCAGAGCAGGAGAGGTTACTAAAAGAAATTCCAAGGATC 1731
|||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| |||
Sbjct 1570 AGAGAACTTCTGGAAAAAACTTCAGAGCAGGAGAGGTTACTAAAAGAAACTCCAAGAATC 1629
Query 1732 ATTGAAGACTTCATCGAGATTAAACAAGAACCATGTGTCGGCGGTTTGTCACATGAGGCG 1791
||||||||||| |||||||| ||||||||||||| |||| |||||||||| |||||||||
Sbjct 1630 ATTGAAGACTTGATCGAGATAAAACAAGAACCATCTGTCAGCGGTTTGTCTCATGAGGCG 1689
Query 1792 GTTATAAATATCGATTAA 1809
|| ||| |||||||||||
Sbjct 1690 GTGATAGATATCGATTAA 1707
Score = 182 bits (98), Expect = 1e-44
Identities = 121/132 (92%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 500 CTTCAAAGCCACAAAAGAAAGGTGTCAAGTC-AAAGTACAAAGATGATCCCAAATTTTCG 558
|||||||| ||| ||||||||| | |||| | |||||||||||||||||||||||| ||
Sbjct 566 CTTCAAAGTCACGAAAGAAAGGCGACAAG-CTGAAGTACAAAGATGATCCCAAATTTCCG 624
Query 559 CTTGGTGATGTCCACACTTCAAAGTCACAAAAGAAAGGCGACAAGCTGAAGAACAAAGAT 618
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 625 CTTGGTGATGTCCACACTTCAAAGTCAGGAAAGAAAGGCGTCAAGCTGAAGAACAAAGAT 684
Query 619 GATCCCAAATTT 630
||||||||||||
Sbjct 685 GATCCCAAATTT 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76180490000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5