BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63710.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496559 jgi|Araly1|496559|fgenesh2_kg.8__2375__AT5G63710.1 3256 0.0
> Ahg496559 jgi|Araly1|496559|fgenesh2_kg.8__2375__AT5G63710.1
Length=2073
Score = 3256 bits (1763), Expect = 0.0
Identities = 1960/2055 (95%), Gaps = 14/2055 (1%)
Strand=Plus/Plus
Query 17 CCCATGTTTTCGTTCTCTTCCGTTTAGAGTGTTTTCAGCTCCTCTATGGCTCACTCGGGG 76
|||||||||| |||||||| |||||||||| |||||||| ||||||||||||||| ||
Sbjct 1 CCCATGTTTTTGTTCTCTTGTGTTTAGAGTG-TTTCAGCTTCTCTATGGCTCACTC-AGG 58
Query 77 AACGGTGAAAGT--T--TCCATGATCCTCTTCGAGGATTCATTCAAAGAAATTGCTTTAG 132
|| || || | || | || ||| ||||||||||||| ||||||||||||||
Sbjct 59 AA--GTTTTCGTGATCCTCTAAGA-ACTCGAAGAGGATTCATTCACAGAAATTGCTTTAG 115
Query 133 ATGGAACAATCAGAAATTGATCTTACAATGTTTCATGGCCTTAGCTTTTGTGGGAATCAC 192
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 116 ATGGAACAATCAGAAATTGATCTTACAATGCTTCATGGCCTTAGCTTTTGTGGGAGTCAC 175
Query 193 TTCGTCAACAACTCAACCAGATATCGAAGGAGGAGCTCTGTTGCAGCTCAGAGATTCGCT 252
||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 176 TTCTTCAACAACTCAACCAGATATCGAAGGGGGAGCTTTGTTGCAGCTCAGAGATTCTCT 235
Query 253 TAATGATTCGAGCAATCGTCTAAAATGGACACGCGATTTTGTGAGCCCTTGCTATAGTTG 312
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 236 TAATGATTCGAGCAATCGTCTAAAATGGACACGCGATTTCGTGAGCCCTTGCTATAGTTG 295
Query 313 GTCTTATGTTACCTGCAGAGGCCAGAGTGTTGTGGCTCTAAATCTTGCCTCGAGTGGATT 372
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 296 GTCTTATGTTACCTGCAGAGGCCAGAGTGTTGTGGCTCTAAATCTTGCCTCAAATGGATT 355
Query 373 CACAGGAACACTCTCTCCAGCTATTACAAAACTGAAGTTCTTGGTTACCTTAGAGTTACA 432
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CACAGGAACACTATCTCCAGCTATTACAAAACTGAAGTTCTTGGTTACCTTAGAGTTACA 415
Query 433 GAACAATAGTTTATCTGGTGCCTTACCAGATTCTCTTGGGAACATGGTTAATCTACAGAC 492
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 416 GAACAATAGTTTATCTGGTGCCTTACCAGAGTCTCTTGGGAACATGGTTAATCTACAGAC 475
Query 493 TTTAAACCTATCAGTGAATAGTTTCAGCGGATCGATACCAGCGAGCTGGAGTCAGCTCTC 552
||||||||||||| |||| ||||||||||| || ||||| || |||||||||||||||||
Sbjct 476 TTTAAACCTATCAATGAACAGTTTCAGCGGCTCAATACCCGCAAGCTGGAGTCAGCTCTC 535
Query 553 GAATCTAAAGCACTTGGATCTCTCATCCAATAATTTAACAGGAAGCATCCCAACACAATT 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GAATCTAAAGCACTTGGATCTCTCATCCAATAATTTAACAGGAAGCATCCCAACACAATT 595
Query 613 CTTCTCAATCCCAACATTCGATTTTTCAGGAACTCAGCTTATATGCGGTAAAAGTTTGAA 672
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 596 CTTCTCAATACCAACATTCGATTTTTCAGGAACTCAGCTCATATGTGGTAAAAGTTTGAA 655
Query 673 TCAGCCTTGTTCTTCAAGTTCTCGTCTTCCAGTCACATCCTCCAAGAAAAAGCTGAGAGA 732
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 656 TCAGCCTTGCTCTTCAAGTTCTCGTCTACCAGTCACATCCTCCAAGAAGAAGCTGAGAGA 715
Query 733 CATTACTTTGACTGCAAGTTGTGTTGCTTCTATAATCTTATTCCTTGGAGCAATGGTTAT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CATTACTTTGACTGCAAGTTGTGTTGCTTCTATAATCTTATTCCTTGGAGCAATGGTTAT 775
Query 793 GTATCATCACCATCGCGTCCG-CAGAACCAAATACGACATCTTTTTTGATGTAGCTGGGG 851
||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |
Sbjct 776 GTATCATCACCATCGCGTCCGCCA-AACCAAATACGACATCTTTTTCGATGTAGCTGGTG 834
Query 852 AAGATGACAGGAAGATTTCCTTTGGACAACTAAAACGATTCTCTTTACGTGAAATCCAGC 911
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 835 AAGATGACAGGAAGATTTCCTTTGGACAGCTAAAAAGATTCTCTTTACGTGAAATCCAGC 894
Query 912 TCGCAACAGATAGTTTCAACGAGAGCAATTTGATAGGACAAGGAGGATTTGGTAAAGTAT 971
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 TCGCAACAGATAGTTTCAACGAGAGCAATTTGATCGGACAAGGAGGATTTGGTAAAGTAT 954
Query 972 ACAGAGGTTTGCTTCCAGACAAAACAAAAGTTGCAGTGAAACGCCTTGCGGATTACTTCA 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACAGAGGTTTGCTTCCAGACAAAACAAAAGTTGCAGTGAAACGCCTTGCGGATTACTTCA 1014
Query 1032 GTCCTGGAGGAGAAGCTGCTTTCCAAAGAGAGATTCAGCTCATAAGCGTTGCGGTTCATA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTCCTGGAGGAGAAGCTGCTTTCCAAAGAGAGATTCAGCTCATAAGCGTTGCGGTTCATA 1074
Query 1092 AAAATCTCTTACGCCTTATTGGCTTCTGCACAACTTCCTCTGAGAGAATCCTTGTTTATC 1151
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1075 AGAATCTCTTACGCCTTATTGGCTTCTGCACAACTTCCTCCGAGAGAATCCTTGTTTATC 1134
Query 1152 CATACATGGAAAATCTTAGTGTTGCATATCGACTAAGAGATTTGAAAGCGGGAGAGGAAG 1211
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1135 CATACATGGAAAATCTTAGTGTCGCATATCGACTAAGAGATTTGAAAGCGGGAGAGGAAG 1194
Query 1212 GATTAGACTGGCCAACAAGGAAGCGTGTAGCTTTTGGTTCAGCTCACGGTTTAGAGTATC 1271
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1195 GATTAGATTGGCCAACAAGGAAGCGTGTAGCTTTCGGTTCAGCTCATGGTTTAGAGTATC 1254
Query 1272 TACACGAACATTGTAACCCGAAGATCATACACCGCGATCTCAAGGCTGCAAACATACTTT 1331
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TACACGAACATTGTAATCCGAAGATCATACACCGCGATCTCAAGGCTGCAAACATACTTT 1314
Query 1332 TAGACAACAATTTTGAGCCAGTTCTTGGAGATTTCGGTTTAGCTAAGCTTGTGGACACAT 1391
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TAGACAACAATTTTGAGCCTGTTCTTGGAGATTTCGGTTTAGCTAAGCTTGTGGACACAT 1374
Query 1392 CTCTGACTCATGTCACAACTCAAGTCCGAGGCACAATGGGTCACATTGCGCCAGAGTATC 1451
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1375 CACTGACTCATGTCACAACTCAAGTCCGAGGAACAATGGGTCACATTGCGCCAGAGTATC 1434
Query 1452 TCTGCACAGGAAAATCATCTGAAAAAACCGATGTTTTTGGTTACGGTATAACGCTTCTTG 1511
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1435 TCTGCACAGGAAAATCATCGGAAAAGACTGATGTTTTTGGTTACGGTATAACGCTTCTTG 1494
Query 1512 AGCTTGTTACTGGTCAGCGCGCAATCGATTTTTCACGCTTGGAAGAAGAGGAAAATATTC 1571
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1495 AGCTCGTTACTGGTCAGCGTGCAATCGATTTTTCACGCTTAGAAGAAGAGGAAAATATTC 1554
Query 1572 TCTTGCTTGATCATATAAAGAAGTTGCTTAGAGAACAGAGACTTAGAGACATTGTTGATA 1631
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1555 TCTTGCTTGATCACATAAAGAAGTTGCTTAGAGAACAGAGACTCAGAGACATTGTTGATA 1614
Query 1632 GCAATTTGACTACATATGACTCCAAAGAAGTTGAAACAATCGTTCAAGTGGCTCTTCTCT 1691
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1615 GCAATTTGACTACATATGACTCTAAAGAAGTTGAAACCATTGTTCAAGTGGCTCTTCTCT 1674
Query 1692 GCACACAAGGCTCACCAGAAGATAGACCAGCGATGTCTGAAGTGGTCAAAATGCTTCAAG 1751
|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1675 GCACGCAAGGCTCACCAGAAGATAGACCAGCGATGTCTGAAGTTGTTAAAATGCTTCAAG 1734
Query 1752 GGACTGGTGGTTTGGCTGAGAAATGGACTGAATGGGAACAACTTGAAGAAGTTAGGAACA 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 GGACTGGTGGTTTGGCTGAGAAATGGACTGAATGGGAACAACTTGAAGAAGTTAGGAACA 1794
Query 1812 AAGAAGCATTGTTGCTTCCGACTTTACCGGCTACTTGGGATGAAGAAGAAACCACCGTTG 1871
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1795 AAGAAGCATTGTTGCTTCCGACTTTACCAGCTACTTGGGATGAAGAAGAAACCACCGTTG 1854
Query 1872 ATCAAGAATCTATCCGATTATCGACAGCAAGATGAAGAAGAAACAGAGAGAGAAAGATAT 1931
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||
Sbjct 1855 ATCAAGAATCTATCCGATTATCGGCAGCAAGATGAAGAAGAAATAGAGAGAGATA--TAT 1912
Query 1932 CTATGAAAACAAACTTGCATTACAGAAGATAAACTTAGAAAGTATTTTAAGCTGCTAATT 1991
|||||||| ||||||||| ||||| ||||||||| |||||||||||||||| |||||||
Sbjct 1913 CTATGAAATCAAACTTGCGTTACAAAAGATAAACATAGAAAGTATTTTAAGAGGCTAATT 1972
Query 1992 GTATTGAACCAGGTGGGGAAAACGAAGCAAACACACAACGTTGATTTGTGTAATAGATGA 2051
|| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1973 GTTTTGAAACAGGTGGGAAAAACGAAGCAAA-ACACAACGTTGATTTGTGTAATAGATGA 2031
Query 2052 TATGATATACATAAC 2066
|||||||||||||||
Sbjct 2032 TATGATATACATAAC 2046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5