BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63730.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496560 jgi|Araly1|496560|fgenesh2_kg.8__2376__AT5G63730.1 2340 0.0
Ahg496562 jgi|Araly1|496562|fgenesh2_kg.8__2378__AT5G63760.2 496 3e-139
Ahg951834 jgi|Araly1|951834|scaffold_20300003.1 261 1e-68
> Ahg496560 jgi|Araly1|496560|fgenesh2_kg.8__2376__AT5G63730.1
Length=1519
Score = 2340 bits (1267), Expect = 0.0
Identities = 1438/1522 (94%), Gaps = 6/1522 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTACGATGGACGGAGACCCTACTCTGTTCTAACGAGAAATGAAATTACCGTAAAG 60
|||||| ||||| || ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAGCACGATCGAGGGAAACCCTACTCTGTTCTAACGAGAAATGAAATTAGCGTAAAG 60
Query 61 ATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTTCATATCAAACTCCGATGCGACC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTTCATATCAAAATCCGATGCGACC 120
Query 121 GTACTTCTTATGTATCTCCGATGGGACTCGCTTCGTGTTTCAGAGCGTTTAGGTGAAAAC 180
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 GTACTTCTTATGTATCTCCGATGGGATTCGCTTCGTGTTTCAGAGCGTTTGGGTGAAAAT 180
Query 181 AAGGAGAAATTATTGATGGATTCAGGTTTGAAATCAGTCATGATCGATCCCAGTCCAGAT 240
|||||||| ||||||||||||||||||||| ||||||| |||| ||||||| |||||||
Sbjct 181 AAGGAGAAGTTATTGATGGATTCAGGTTTGGAATCAGTTGTGATTGATCCCAATCCAGAT 240
Query 241 TCATCTAGCGAGATTAGCTTGGAGACTGATGTTTATGAGTTTGATGGTGATAATGATTTA 300
|||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||
Sbjct 241 TCATCTAGCGAGATTAGCTTGGAGACCGATGTTTATGAGTTTGCTGATGATGATGATTTG 300
Query 301 ATCTCCATGCCCTTTTGTTCTCACAAGTTCGACTCAAAATATTGGAGAGAGTATCTTGAG 360
||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 301 ATCTCCACGCCCTTTTGTTCTCACAAGTTCGACACAACATATTGGAGAGAGTATCTTGAG 360
Query 361 AAGAA-TTTCTACTATGTGGAGAAAATCCAAACCACAATCTCTTGTCCTGATCAAGATTG 419
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 AAGAACTTT-TACTATGTGGAGAAAATCCAAACTGCAATCTCTTGTCCTGATCAAGATTG 419
Query 420 TCGATCTGCGGTTGGACCAGACACGATTGAGAAACTAACAGTACGTGATCAAGAGATGTA 479
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TCGATCTGCGGTTGGACCGGACACGATTGAGAAACTAACTGTACGTGATCAAGAGATGTA 479
Query 480 CGAGAGGTACAT-TTGGAGATCTTACATTGAAGGAAACAAGGTATTGATGATCAAACAGT 538
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGAGAGGTACATCTT-GAGATCTTACATTGAAGGAAACAAGGTATTGATGATCAAACAGT 538
Query 539 GTCCTGCACGGAATTGCGATTATGTTATTGAGTTTCATCAAGAGAATGATGATGATGATG 598
||||||| ||| ||||| |||| || |||||||||||||| |||||||||||||||||||
Sbjct 539 GTCCTGCTCGGGATTGCAATTACGTCATTGAGTTTCATCAGGAGAATGATGATGATGATG 598
Query 599 AGTATAGTTTAAACGTGGTGTGTATCTGTGGTCATATCTTCTGTTGGAGATGCAGACTTG 658
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTATAGTTTAAACGTGGTGTGTCTCTGTGGTCATATCTTCTGTTGGAGATGCAGACTTG 658
Query 659 AGTCACACAGACCAGTGAGTTGTAACAAGGCCTCTGATTGGTTGTGTAGTGCCACAATGA 718
|||||||||||||||||| || |||||||||||||||||||||| ||||||| ||| ||
Sbjct 659 AGTCACACAGACCAGTGACCTGCAACAAGGCCTCTGATTGGTTGTCTAGTGCCTCAAGGA 718
Query 719 AAATATCAGATGAATCATTTAGCCTTTATC-CGACCAAAACCAAGACAGTGACTTGCCCT 777
|| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 719 AATTATCAGATGAATCATTTAGCCTTT-GCTCGACCAAAACCAAGACAGTGACTTGCCCT 777
Query 778 CATTGCCTCTGTTCTCTGGAGTCTGATACAAAAATGCCCCAGTTCTTGACTTGTGTCTGC 837
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 CATTGCCTTTGTTCTCTGGAGTCTGATACAAAAATGCCTCAGTTCTTGACTTGTGTCTGC 837
Query 838 AGGCTTCGTTTCTGTTCGAGGTGTTTGCGGTCAGAGGAAGCCCACAAAATTGAAGCAGTA 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGGCTTCGTTTCTGTTCGAGATGTTTGCGGTCAGAGGAAGCCCACAAAATTGAAGCAGTA 897
Query 898 GACTCTGGATTCTGTATTAAAACAGAAGTGGGGATTTTATGTGAGGATCGCTGGAACGTG 957
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GACTCTGGATTCTGTGTTAAAACAGAAGTGGGGATTTTATGTGAGGATCGCTGGAACGTG 957
Query 958 TGTCAGAAGTTACTGGAGCAAGCCAAATCCGATCTAGAAGCTTTCGAGGAAACCAACATC 1017
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 TGTCAGAATTTACTCGAGCAAGCCAAATCCGATCTAGAAGCTTTCGAGGAATCCAACATC 1017
Query 1018 AAGAAACCGAGTGACTTATTAAGGGAGCAAGACATTATGATTATAAGAGAAGGGTTGATG 1077
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 AAGAATCCGAGTGACTTATTAAGGGAACAAGACATTATGATTATAAGAGAAGGGTTGATG 1077
Query 1078 TTGATTGTTCAATGCAGACGAGTCCTTAAATGGTGTTGTGTGTATGACTATTTCCACACA 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 TTGATTGTTCAATGCAGACGAGTCCTTAAATGGTGTTGTGTGTATGACTATTTCTACACA 1137
Query 1138 GAGTATGAGAACTCGAAGGAGTATCTACGATACCTCCAAGGAAATGCAATCGCCACGCTC 1197
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||
Sbjct 1138 GAGTATGAGAACTCGAAGGAGTATCTACGATACCTGCAAGGAAATGCGATCGCGGCTCTC 1197
Query 1198 CAGAGTTACTCAAACACTTTACAAGAGCAAAAAGATATCGTCCTCGCTGCAGCTACTTAT 1257
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1198 CAGAGTTACTCAAACACTTTACAAGAGCAAAAAGATATCGTCCTCACTGCAGCTACTTAT 1257
Query 1258 GAAGAGTGTACTTTCTTCAGACATACGATACCTACTGCGACAAGCAACATTGGTAACTAC 1317
|||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1258 GAAGAGTGTAGTTTCTTCAGACATACGATACCCACGGCGACAAGCAACATTGGTAACTAC 1317
Query 1318 TTTTATGATTTTATGAAAACTTTACAAGATGGTTTGGTCGATGTAAAGGTGAAGTCATAC 1377
||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1318 TTTTATGATTTCATCAAAACTTTGCAAGATGGTTTGGTCGATGTGAGGGTGAAGTCATAC 1377
Query 1378 AACGGCGGGACTGGTCCTTTCTGGTACTGTGATCGCTGCACGTATGCAAACACTTGGGAG 1437
||||| ||| | |||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 1378 AACGGTGGGGCGGGTCCTTTATGGTACTGTGATCGCTGCACCTATGCAAACACTTGGCAC 1437
Query 1438 GATAATGAGTGTGAGATGTGCTATGATGATAGTGCCTCTCTTGTGGGAGAGATAAGTGAT 1497
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1438 GATAAGGAGTGTGAGATGTGCTATTATGATAGTGCCTCTCTTGTGGGAGAGTTAAGTGAT 1497
Query 1498 TTGTTTCTTAACAAAGTTTCTT 1519
|||| ||||||||| |||||||
Sbjct 1498 TTGTCTCTTAACAAGGTTTCTT 1519
> Ahg496562 jgi|Araly1|496562|fgenesh2_kg.8__2378__AT5G63760.2
Length=1536
Score = 496 bits (268), Expect = 3e-139
Identities = 834/1093 (76%), Gaps = 96/1093 (9%)
Strand=Plus/Plus
Query 137 TCCGATGGGACTCGCTTCGTGTTTCAGAGCGTTTAGGTGAAAACAAGGAGAAATTATTGA 196
|||||||||||||| ||| |||| |||||||| |||||| || ||||||| || |||
Sbjct 25 TCCGATGGGACTCGAATCGGGTTTTGGAGCGTTTGGGTGAAGACGCGGAGAAACTAATGA 84
Query 197 -TGGATTCAGGTTTGAAATCAGTCATGATCGATCCCAGTCCAGATTCATCTAGCGAGAT- 254
| || ||||||||||||||||| | || ||| | | || ||||| |||| |||
Sbjct 85 CT-GAATCAGGTTTGAAATCAGTTGTAATTGATTCGAATCAAGATTTATCT-----GATG 138
Query 255 TAGCTTG-GAGACTGATGTTTATGAGTTTGATGGTGATAATGATTTAATCTCCATGCCCT 313
|| |||| | || | || | | || ||| || || | ||| ||||||||||| | ||
Sbjct 139 TATCTTGTGGGA-T-TTG-CTCTAAGATTGGTGATGGTGATGGTTTAATCTCCACG-GCT 194
Query 314 T-TTGTTCTCACAAGTTCGACT-CAA-A-ATATTGGAGAGAGTATCTTGAGAAGAATTTC 369
| ||||||||||||||| | | ||| | | |||||| |||||||||||||||||||||
Sbjct 195 TGTTGTTCTCACAAGTT-G--TGCAACACTTGTTGGAGCGAGTATCTTGAGAAGAATTTC 251
Query 370 TACTATGTGGAGAAAATCCAAACCACAATCTCTTGTCCTGATCAAGATTGTCGATCTGCG 429
| || ||||||||||| |||||| |||||||||||||||||||| ||||||| ||||
Sbjct 252 TTCTCTGTGGAGAAAAACCAAACTGCAATCTCTTGTCCTGATCAATCTTGTCGAGCTGCT 311
Query 430 GTTGGACCAGACACGATTGAGAAACTAACAGTACGTGATCAAGAGATGTACGAGAGGTAC 489
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 312 GTTGGACCGGACACGATTGAGAAACTCACCGTACGTGATCAAGAGATGTACGAGAAGTAT 371
Query 490 ATT-TGGAGATCTTACATTGAAG-GA-AACAAGGTATTGATGATCAAACAGTGTCCTGC- 545
|| | || ||||||| || || || | || || || ||||||||||||||||||
Sbjct 372 GTTCT-GAAATCTTACCGTG-AGAGATGTC-TGGGATGGAAGATCAAACAGTGTCCTGCT 428
Query 546 ACGGAATTGCGATTATGTTATTGAGTTTCATCAAGAGAATGATGATGATGATGAGTATAG 605
||| |||| |||| ||||||||||||| | | | | ||| ||||| ||| ||||
Sbjct 429 CCGG-GTTGCAATTACAACATTGAGTTTCATCTGGCG-A-G-TGAAGATGAAGAGCATAG 484
Query 606 TTTAAACGTGGTGTGTATCTGTGGTCATATCTTCTGTTGGAGATGCA-GACTTGAGTCAC 664
|||||| | |||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 485 CTTAAACATTGTGTGTCTCTGTGGTCATATCTTCTGTTGGAGATGCATG-CTTGAGTCAC 543
Query 665 ACAGACCAGTGAGTTGTAACAAGGCCTCTGATTGGTTGTGTAGTG-CCACAATGAAAAT- 722
|||||||||||| || ||||| || ||||||||||||| ||| | || || |||| |
Sbjct 544 ACAGACCAGTGACCTGCAACAACGCTTCTGATTGGTTGTCTAGAGACCTGAA-GAAATTG 602
Query 723 ATC--AGA--T-GA-AT-C-ATTTAGCCTTTATCC-G-ACCAAAACCAAGAC-AGTGACT 771
|| ||| | || | | || | ||| | || | | ||||||| || | | ||
Sbjct 603 ATAGGAGAAGTAGACAAGCCATCGACCCTCT--CCTGGATTGAAACCAATACCAA-GCCT 659
Query 772 TGCCCTCATTGCCTCTGTTC-TCTGGAG-TC--TGAT--ACAAAAATGCC-CCAGTTCTT 824
|||||||||||| | | ||| | ||||| | |||| ||| |||| |||||||||
Sbjct 660 TGCCCTCATTGCTT-TATTCCTGTGGAGCTTGATGATGTACACCAATGGAACCAGTTCTT 718
Query 825 GACTTGTGTCTGCAG-GCTTCGTTTCTGTTCGAGGTGTTTGCGGTCAGAGGAAGCCCACA 883
|||||||| |||||| | |||||||||| || |||||| | |||| |||||| |||
Sbjct 719 GACTTGTGCCTGCAGTGGG-CGTTTCTGTTGGAAGTGTTTTCAGTCACCGGAAGCTCACG 777
Query 884 AAATTGAAGCAGTAGACTCTGGATTCTGTATTAAAACAGAAG-TGGG-G-A-T-TTTA-T 937
||| | || | |||| |||| || | | || | | | | | | ||| |
Sbjct 778 GAAT-----C--TA---T--GGATCCTGTTTTGCACCGGAGGATTTGAGCAATATTTCGT 825
Query 938 GTGAGGATCGCTGGAACGTGTGTCAGAAGTT--ACTGGAGCAAGCCAAATCCGATCTAGA 995
|| ||||| |||||| | ||||| ||| |||||||||||| |||||||| |||||
Sbjct 826 GTTTGGATCTCTGGAAGGCAAGTCAG--GTTTCACTGGAGCAAGCTAAATCCGAGCTAGA 883
Query 996 AGCTTTCGAGGAAACCA-ACATCAAGAAACCGAGTGACTTATTAAGGGAGCAAGACATTA 1054
||||||||||||| ||| | ||||||||||| |||||||| |||| |||||||| |||
Sbjct 884 AGCTTTCGAGGAATCCATA-ATCAAGAAACCTAGTGACTTG--AAGG-AGCAAGACGTTA 939
Query 1055 TGATTA-TAAGAGAAGGGTTGATGTT-GATTGTTCAATGCAGACGAGT-CCTTAAATGGT 1111
| || |||||||||| ||||| | | ||||||| ||||||| ||| ||| ||||||
Sbjct 940 A-AGTACTAAGAGAAGGACTGATGCTCG-TTGTTCAGTGCAGAC-AGTTCCTCAAATGGA 996
Query 1112 GTTGTGTGTATGACTATTTCCACACAGAGTATGAGAACTCGAAG-GAG--TATCTACGAT 1168
| |||||||| |||||| |||||||||||||||| | ||||| ||| || || ||||
Sbjct 997 GCTGTGTGTACGACTATCTCCACACAGAGTATGATATGGCGAAGAGAGAGTACCTGCGAT 1056
Query 1169 ACCTCCAAGGAAA 1181
|||||||| |||
Sbjct 1057 TCCTCCAAGAAAA 1069
> Ahg951834 jgi|Araly1|951834|scaffold_20300003.1
Length=226
Score = 261 bits (141), Expect = 1e-68
Identities = 157/165 (95%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTACGATGGACGGAGACCCTACTCTGTTCTAACGAGAAATGAAATTACCGTAAAG 60
|||||| ||||| || ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATGGAGCACGATCGAGGGAAACCCTACTCTGTTCTAACGAGAAATGAAATTAGCGTAAAG 80
Query 61 ATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTTCATATCAAACTCCGATGCGACC 120
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 81 ATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTGCATATCAAAATCCGATGCGACC 140
Query 121 GTACTTCTTATGTATCTCCGATGGGACTCGCTTCGTGTTTCAGAG 165
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 141 GTACTTCTTATGTATCTCCGATGGGATTCGCTTCGTGTTTCAGAG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5