BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63740.1 Length=681 Score E Sequences producing significant alignments: (Bits) Value Ahg918157 jgi|Araly1|918157|Al_scaffold_0008_2908 189 2e-47 > Ahg918157 jgi|Araly1|918157|Al_scaffold_0008_2908 Length=387 Score = 189 bits (102), Expect = 2e-47 Identities = 171/203 (84%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 481 GAGTA-CCTAGAGACAAATTTCTACTCTCTGGAGGAAAACTTAACCGTAATCTCATGTCC 539 ||||| | || ||| ||||||||||||||||||||||||| | ||||| ||||||||||| Sbjct 193 GAGTATCTTA-AGAAAAATTTCTACTCTCTGGAGGAAAACCTCACCGTGATCTCATGTCC 251 Query 540 TGATCAAGATTGTGGAGCTTCGGTTAGACTAAAAACGATTGAGAAACTAGGAGTACATGA 599 ||||||||||||||||||||| ||| ||| |||||||||||| | ||||||||||| ||| Sbjct 252 TGATCAAGATTGTGGAGCTTCTGTTGGACCAAAAACGATTGACAGACTAGGAGTACGTGA 311 Query 600 TCAAGACATGTACTTGAGTTATGTTATGAGAGT-TTACATTGAGAATGAGAGCAAACAGC 658 |||||| |||||| || ||| || ||||| | |||| |||||| | ||| |||| Sbjct 312 TCAAGAGATGTACGGGAACTATATTCTGAGA-TCTTACCTTGAGA--G----CAAGCAGC 364 Query 659 TCCCTGCACCGGATGACAACTAG 681 |||||||||||||| ||||||| Sbjct 365 TCCCTGCACCGGATTCCAACTAG 387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25008633552 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5