BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63740.1

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918157 jgi|Araly1|918157|Al_scaffold_0008_2908                    189    2e-47


> Ahg918157 jgi|Araly1|918157|Al_scaffold_0008_2908
Length=387

 Score =  189 bits (102),  Expect = 2e-47
 Identities = 171/203 (84%), Gaps = 10/203 (5%)
 Strand=Plus/Plus

Query  481  GAGTA-CCTAGAGACAAATTTCTACTCTCTGGAGGAAAACTTAACCGTAATCTCATGTCC  539
            ||||| | || ||| ||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct  193  GAGTATCTTA-AGAAAAATTTCTACTCTCTGGAGGAAAACCTCACCGTGATCTCATGTCC  251

Query  540  TGATCAAGATTGTGGAGCTTCGGTTAGACTAAAAACGATTGAGAAACTAGGAGTACATGA  599
            ||||||||||||||||||||| ||| ||| |||||||||||| | ||||||||||| |||
Sbjct  252  TGATCAAGATTGTGGAGCTTCTGTTGGACCAAAAACGATTGACAGACTAGGAGTACGTGA  311

Query  600  TCAAGACATGTACTTGAGTTATGTTATGAGAGT-TTACATTGAGAATGAGAGCAAACAGC  658
            |||||| ||||||  ||  ||| || ||||| | |||| ||||||  |    ||| ||||
Sbjct  312  TCAAGAGATGTACGGGAACTATATTCTGAGA-TCTTACCTTGAGA--G----CAAGCAGC  364

Query  659  TCCCTGCACCGGATGACAACTAG  681
            ||||||||||||||  |||||||
Sbjct  365  TCCCTGCACCGGATTCCAACTAG  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25008633552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5