BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63750.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496561 jgi|Araly1|496561|fgenesh2_kg.8__2377__AT5G63750.1 1371 0.0
Ahg496560 jgi|Araly1|496560|fgenesh2_kg.8__2376__AT5G63730.1 542 4e-153
Ahg496562 jgi|Araly1|496562|fgenesh2_kg.8__2378__AT5G63760.2 185 8e-46
> Ahg496561 jgi|Araly1|496561|fgenesh2_kg.8__2377__AT5G63750.1
Length=1672
Score = 1371 bits (742), Expect = 0.0
Identities = 998/1115 (90%), Gaps = 44/1115 (4%)
Strand=Plus/Plus
Query 9 CCTAAAAAGTTGAAACAGAAATCATCT--AGA-GACGATTAAGAGAAA-ACTAAGAACGA 64
|||||| |||||||||||||||||||| ||| |||||| |||| ||| || |||| |||
Sbjct 1 CCTAAATAGTTGAAACAGAAATCATCTAGAGACGACGATCAAGA-AAACACGAAGACCGA 59
Query 65 TAACTCTCGCCTTCGATTCTTTTTGTTGATTGAGGCGCAAGCTACC--T--GCACACAAT 120
|||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 60 TAACTCTCACCTTCGATTCTTTTTGTTGATTGAGGCACAAGCTACCGGTAAGCACACAAT 119
Query 121 GGAGAACAATCGAGAGGGACCATACTCTGTTCTAACGAGAGATCAACTTAAAGGAAATAT 180
||||||| ||||||||||||||||||||||||||||||||||| |||||| || ||| ||
Sbjct 120 GGAGAACGATCGAGAGGGACCATACTCTGTTCTAACGAGAGATGAACTTAGAGAAAAGAT 179
Query 181 GAAGAAGCAGATCGCCGAAATCTCTGAGATCTTCTCGTTATCAAAACCCGATGCGACCGT 240
| |||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 180 GGAGAAACAGATCGCTGAAATCTCTGAGATATTCTCGTTATCAAAATCCGATGCGACCGT 239
Query 241 ACTCCTCATGTTTCTCCGATGGGACTCTCAT-GAAGTTTCTGAGTT-TTTGGTTGAAAAC 298
||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||
Sbjct 240 ACTCCTCATGTTTCTCCGATGGGACTCTCATCGA-GTTTCTGA-TTGTTTGGTTGAAAAC 297
Query 299 AACGAAAAAGTCTTGTCGGAATCAGGTTTGAAACCAGTGGTAGTTGATCCGAATCAAGAC 358
|| || |||||||| ||||| || |||||||||||||| |||| | |||||||||||||
Sbjct 298 AAGGAGAAAGTCTTATCGGAGTCCGGTTTGAAACCAGTTGTAGCTAATCCGAATCAAGAA 357
Query 359 TTATATAAGATTTCTTCTTGTGGGATTTGCTTTAAGACTTGTGATGATGGTGATTACTTA 418
|||| ||| || || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 TTATCTAATAT--CT-CTTGTGGGATTTGCTTTAAGACTTGTGATGATGATGATTACTTA 414
Query 419 ATCTCCACGCCCTTTTGCTCTCACATGTTCTGCAAATCTTGTTGGAGAAAGTATCTTGAA 478
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 ATCTCCACGCCCTATTGTTCTCACATGTTCTGCAAATCTTGTTGGAGAAAGTATCTTGGA 474
Query 479 AAGAATTTCTACTTGGTGGAGAAAACCCAAACTCGAATCTCTTGTCCTCATGGAGCTTGT 538
||||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||
Sbjct 475 AAGAATTTCTACTTGGTGGAGAAAAACCAAACTAGAATTTCTTGTCCTCATCCAGCTTGT 534
Query 539 CAAGCCGCGGTTGGACCGGACACGATTCAGAAGCTAACCGTATGTGATCAAGAGATGTAC 598
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 CAAGCTGCGGTTGGACCGGACACGATTCAGAAGCTAACCGTACGTGATCAAGAGATGTAC 594
Query 599 GTGGAGTATATTCTGAGATCTTACATTGAGGGAAACAAGGTATTGGAGATCAAATACTGT 658
||||||||| ||||||| |||||| |||||| |||| ||||||||| | |||
Sbjct 595 GTGGAGTATGTTCTGAGGTCTTACCTTGAGG---------TATTAGAGATCAAAGAGTGT 645
Query 659 CCTGCACAG-GATTGCAATTACGTCATTGAGTTTCATCAGAAGAATCATGATGGTGCTGA 717
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 646 CCTGCAC-GTGATTGCAATTACGTCATTGAGTTTCATCAGAAGAATCATGATGGTGATGA 704
Query 718 TCAGGAAGACTATGGCTTCAACGTGGTGTGTCTCTGTGGTCATATCTTCTGCTGGAGATG 777
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ---GGAAGACTATAGCTTAAACGTGGTGTGTCTCTGTGGTCATATCTTCTGCTGGAGATG 761
Query 778 CATGCTTGAGTCACACAAACCAGTGACCTGCAACAACGCGTCTGATTGGTTGTTTCGAGA 837
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 762 CATGCTTGAGTCACACAAACCAGTGACCTGCAACAATGCGTCTGATTGGTTGTTTAGAGA 821
Query 838 CCTAAATAGCTTATCGAAGGAATCAGGTGAAAAGCCATTGAGCCTCTCCTCGTTCGAAAC 897
|||||| ||||||||||||| ||||||| |||| |||||||||||||||||| || ||||
Sbjct 822 CCTAAAGAGCTTATCGAAGGTATCAGGTAAAAAACCATTGAGCCTCTCCTCGATCAAAAC 881
Query 898 CAGA-G--AAAAGACTTACCCTCTCTCC-TCGATCAAAGCCACCAAGAA-AGTTTGCCCT 952
|| | ||||||||| | ||||| || | |||||||||||||| ||| | || |||||
Sbjct 882 CACCCGCCAAAAGACTTGCTCTCTC-CCGTTGATCAAAGCCACCACGAACACTT-GCCCT 939
Query 953 CATTGTCTTCGTCCTGCGGATCTTGGTACTAAACAATACCTCCGGTTCTTGACTTGTGCC 1012
|||||| |||||| || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 940 CATTGTTTTCGTCGTGTGGACCTGGGTACTAAACAATACCTCCGGTTCTTGACTTGTGCC 999
Query 1013 TGCA---ACGGTCGTTTCTGCTGGAAGTGTATGCAGCCAGAGGAAGCCCACAAAACGGAA 1069
||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1000 TGCGGGTACGGTCGTTTCTGCTGGAAGTGTATGCAGTCAGAGGAAGACCACAAAACGGAA 1059
Query 1070 TCAGGATTCTATAAATTCTG---TAATGTA-TCGA 1100
||||||| |||||| |||| ||||||| ||||
Sbjct 1060 TCAGGATGGTATAAACTCTGCAGTAATGTACTCGA 1094
Score = 791 bits (428), Expect = 0.0
Identities = 533/585 (91%), Gaps = 2/585 (0%)
Strand=Plus/Plus
Query 1129 ACTCGAGGGAAGAGCAGAACCGGAGAATTCGTGCGTGGGACTCTGGAAGGCGAGTGAGGT 1188
||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| | ||
Sbjct 1089 ACTCGAGAGAAGAGCAGAAGTGGAGAATTCGTGCATGGAACACTGGAAGGCGAGTAAAGT 1148
Query 1189 TTCACTGAAGCAAGCTAAATCTGATCTACAAGCTTTTGAGGAGTCCAACATCAAGAATCC 1248
|||| |||||||||||| ||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 1149 TTCAATGAAGCAAGCTATATCCGATCTACAAGCTTTCGAGGAATCCAACATGGAGAATCC 1208
Query 1249 AAGTGACTTGACCGAGAAAGACTTTACCATTATAAGAAAAGGATTGATGCTGATTGTCCA 1308
| || |||||| |||||||||| | || ||||||||||||||||||||||||||||| ||
Sbjct 1209 AGGTTACTTGAGCGAGAAAGACATGACAATTATAAGAAAAGGATTGATGCTGATTGTTCA 1268
Query 1309 ATGCAGGCAAGTCCTTAAATGGAGCTGTGTATATGATTACTTACATGCAGAGTATGAGAT 1368
|||||| ||||| |||||||||||||| || || || ||||| || |||||||||||||
Sbjct 1269 ATGCAGACAAGTTCTTAAATGGAGCTGCGTGTACGACTACTTCCACACAGAGTATGAGAT 1328
Query 1369 GTCGAAGAGGGAGTACCTGCGATTCCTGCAAGCAGACGCGACCTCACTGGTGGAGAGTTT 1428
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1329 GTCGAAGAGGGAATACCTGCGATTCCTGCAAGCAAACGCGACCTCACTTGTGGAGGGTTA 1388
Query 1429 CTCAAAGACGCTAAATGAGGAGATAGGAAGAGCCTCGTCAGCTACTTATGAAAATTTTTG 1488
||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 1389 CTCAAAGACTCTAAATGAGGAGATAGAAAGAGCCTCGTCAGCTACTTCTGAAAACTTTTG 1448
Query 1489 TTGCGTCAAGCATAAGGTAACCATTGAGACAAGCAACATTGGGAACTACTTTTATCATTT 1548
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 1449 TTGCGTCAAGCATAAGGTAACGATTGAGACTATCAACATTGGGAACTACTTTTATCATTT 1508
Query 1549 CATCAAGACTTTACAAGAAGGTTTGGATGACGTGAAGGTGAAGTCCTACGAC-GACTATG 1607
|||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 1509 CATCAAGACTTTACGAGAAGGTTTGGACGACGTGAAGGTGAAGTCCTAC-ACCGACTATG 1567
Query 1608 GTGGTCTTTTTTGGCTCTGTGATCGCTGCACATATGGAAACACTTGGTTCCATAAAGAGT 1667
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1568 GTGGTCTTTTTTGGCTCTGTGATCGCTGCACATTTGGAAACACTTGGTTCCATAAGGAGT 1627
Query 1668 GTTTGATGTGCAGTGATGATATTGCAGCTCGTGTGGATCTAAGTG 1712
|| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1628 GTACGATGTGCAGTGATGATATTGCAGCTCGTGTGGAGCTAAGTG 1672
> Ahg496560 jgi|Araly1|496560|fgenesh2_kg.8__2376__AT5G63730.1
Length=1519
Score = 542 bits (293), Expect = 4e-153
Identities = 595/733 (81%), Gaps = 51/733 (7%)
Strand=Plus/Plus
Query 119 ATGGAGAACAATCGAGAGG-GACCATACTCTGTTCTAACGAGAGATCAACTTAAAGGAAA 177
|||||| || |||||| || ||| |||||||||||||||||| || || ||| | |||
Sbjct 1 ATGGAGCACGATCGAG-GGAAACCCTACTCTGTTCTAACGAGAAATGAAATTAGCGTAAA 59
Query 178 TATGAAGAAGCAGATCGCCGAAATCTCTGAGATCTTC-TCGTTATCAAAACCCGATGCGA 236
|||||||| |||||| ||||||||||| |||||| || |||||||| |||||||||
Sbjct 60 GATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTTC-ATATCAAAATCCGATGCGA 118
Query 237 CCGTACTCCTCATGTTTCTCCGATGGGACTCTCAT-GAAGTTTCTGAGTTTTTGGTTGAA 295
||||||| || |||| |||||||||||| || | | | ||||| ||| ||||| ||||
Sbjct 119 CCGTACTTCTTATGTATCTCCGATGGGATTCGCTTCG-TGTTTCAGAGCGTTTGGGTGAA 177
Query 296 AACAACGAAAAAG-TCTTG-TCGGAATCAGGTTTGAAACCAGTGGTAG-TTGATCCGAAT 352
|| || | | ||| | ||| | ||| ||||||||| || |||| || | ||||||| |||
Sbjct 178 AATAA-GGAGAAGTTATTGAT-GGATTCAGGTTTGGAATCAGTTGT-GATTGATCCCAAT 234
Query 353 CAAGACTT-ATATA---AGATTTCTTCTTGTGGGA--TTTGCTTTAAGACTTGTGATGAT 406
| ||| || || || ||| || |||| | || || |||| || || || ||||
Sbjct 235 CCAGA-TTCATCTAGCGAGA-TT-AGCTTG-GAGACCGATG-TTTATGAGTT-TGCTGAT 288
Query 407 GGTGATTACTTAATCTCCACGCCCTTTTGCTCTCACATGTTCTG-CA-AATCTTGTTGGA 464
| |||| | || ||||||||||||||||| ||||||| |||| | || || | | |||||
Sbjct 289 GATGATGATTTGATCTCCACGCCCTTTTGTTCTCACAAGTTC-GACACAA-CATATTGGA 346
Query 465 GAAAGTATCTTGAAAAGAA-TTTCTACT-TGGTGGAGAAAACCCAAACTCG-AATCTCTT 521
|| |||||||||| ||||| ||| |||| | |||||||||| ||||||| | ||||||||
Sbjct 347 GAGAGTATCTTGAGAAGAACTTT-TACTAT-GTGGAGAAAATCCAAACT-GCAATCTCTT 403
Query 522 GTCCTCATGGAGCTTGTCAAGCCGCGGTTGGACCGGACACGATTCAGAAGCTAACCGTAT 581
||||| || || ||||| | | ||||||||||||||||||||| |||| ||||| |||
Sbjct 404 GTCCTGATCAAGATTGTCGATCTGCGGTTGGACCGGACACGATTGAGAAACTAACTGTAC 463
Query 582 GTGATCAAGAGATGTACGTGGA-GTATATTC-TGAGATCTTACATTGAGGGAAACAAGGT 639
|||||||||||||||||| || ||| | || |||||||||||||||| |||||||||||
Sbjct 464 GTGATCAAGAGATGTACG-AGAGGTACA-TCTTGAGATCTTACATTGAAGGAAACAAGGT 521
Query 640 ATTGGA-GATCAAATACTGTCCTGCACAGGATTGCAATTACGTCATTGAGTTTCATCAGA 698
||| || ||||||| | |||||||| | |||||||||||||||||||||||||||||||
Sbjct 522 ATT-GATGATCAAACAGTGTCCTGCTCGGGATTGCAATTACGTCATTGAGTTTCATCAGG 580
Query 699 AGAATCATGATGGTGCTGATCAGGAAGACTATGGCTTCAACGTGGTGTGTCTCTGTGGTC 758
|| | |||||| || |||| | || ||| | || ||||||||||||||||||||||
Sbjct 581 AG-A--ATGATGATGATGAT---G-AG--TATAGTTTAAACGTGGTGTGTCTCTGTGGTC 631
Query 759 ATATCTTCTGCTGGAGATGCATG-CTTGAGTCACACAAACCAGTGACCTGCAACAACGCG 817
|||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| ||
Sbjct 632 ATATCTTCTGTTGGAGATGCA-GACTTGAGTCACACAGACCAGTGACCTGCAACAAGGCC 690
Query 818 TCTGATTGGTTGT 830
|||||||||||||
Sbjct 691 TCTGATTGGTTGT 703
> Ahg496562 jgi|Araly1|496562|fgenesh2_kg.8__2378__AT5G63760.2
Length=1536
Score = 185 bits (100), Expect = 8e-46
Identities = 130/145 (90%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 1513 TGAGACAAGCAACATTGGGAACTACTTTTATCATTTCATCAAGACTTTACAAGAAGGTTT 1572
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1154 TGAGACAACCAACATTGGGAACTACTTTTATCATTTCATCAAGACTTTACGAGAAGGTTT 1213
Query 1573 GGATGACGTGAAGGTGAAGTCCTACGACGACTATGGTGGTCTTTTTTGGCTCTGTGATCG 1632
| || ||||||| |||||| |||||| |||||||||||| || |||| | || |||||
Sbjct 1214 AGCCGAGGTGAAGGCGAAGTCGTACGACAACTATGGTGGTCCTTATTGGTTGTGCGATCG 1273
Query 1633 CTGCACATATGGAAACACTTGGTTC 1657
|||||||||||||||| ||||||||
Sbjct 1274 CTGCACATATGGAAACTCTTGGTTC 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5