BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63760.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496562 jgi|Araly1|496562|fgenesh2_kg.8__2378__AT5G63760.2 990 0.0
Ahg496560 jgi|Araly1|496560|fgenesh2_kg.8__2376__AT5G63730.1 431 9e-120
Ahg496561 jgi|Araly1|496561|fgenesh2_kg.8__2377__AT5G63750.1 233 3e-60
> Ahg496562 jgi|Araly1|496562|fgenesh2_kg.8__2378__AT5G63760.2
Length=1536
Score = 990 bits (536), Expect = 0.0
Identities = 753/852 (88%), Gaps = 38/852 (4%)
Strand=Plus/Plus
Query 48 TTTACCTTCGGAGTCAATCTTGATTCCGATGGGACTCGAATCGGGTTTTGGAGCGTTTGG 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTACCTTCGGAGTCAATCTTGATTCCGATGGGACTCGAATCGGGTTTTGGAGCGTTTGG 60
Query 108 GTGAAGACATGGAGAAACTAATGACTGAATCAGGTTTGAAACCAGTTGTTATTGATTCGA 167
|||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 61 GTGAAGACGCGGAGAAACTAATGACTGAATCAGGTTTGAAATCAGTTGTAATTGATTCGA 120
Query 168 ATCAAGATTTATCTCGTGTATATTGTGGGATCTGCTCTAATATTGGTGATGACGATTATG 227
||||||||||| || || | ||| |||| | | ||| || | | || |
Sbjct 121 ATCAAGATTTA--TC-TG---A-TGT---ATCT--TGTGGGATT--TGCT--C---TAAG 161
Query 228 ATGGTGATGCTGTTGTTGTTGATGGTGATTTGATCTCCACGCCTTTTTGTTCTCACAAGT 287
|| || | || || | |||| | | ||| ||||||||| ||| ||||||||||||||
Sbjct 162 AT--TG--G-TGATG--G-TGAT-G-G-TTTAATCTCCACGGCTTGTTGTTCTCACAAGT 210
Query 288 TCTGCAA-AGCTTGTTGGAGCAAGTATCTTAAGAAAAATTTCTTCTCTGTGGAGAAAAAC 346
| ||||| | ||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 211 TGTGCAACA-CTTGTTGGAGCGAGTATCTTGAGAAGAATTTCTTCTCTGTGGAGAAAAAC 269
Query 347 CACACTGCAATCTCTTGTCCTGATCGAGATTGTCGAGCTGCTGTTGGACCGGAGACGGTT 406
|| |||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||
Sbjct 270 CAAACTGCAATCTCTTGTCCTGATCAATCTTGTCGAGCTGCTGTTGGACCGGACACGATT 329
Query 407 GAGAAGCTAACCGTACGTGATCAAGCGATGTACGAGTTGTATATTCTGAAATCTTACCGT 466
||||| || |||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 330 GAGAAACTCACCGTACGTGATCAAGAGATGTACGAGAAGTATGTTCTGAAATCTTACCGT 389
Query 467 GAGAAATACCTGGGATGGAAGCTCAAACTGTGTCCTGCACGGGGTTGCAATTACGTGATT 526
|||| || |||||||||||| |||||| ||||||||| | ||||||||||||| |||
Sbjct 390 GAGAGATGTCTGGGATGGAAGATCAAACAGTGTCCTGCTCCGGGTTGCAATTACAACATT 449
Query 527 GAGTTTCATCTGGCAAGTGAAGATGAAGAGCATAGCTTAAACATTGTGTGTCTCTGTGGT 586
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GAGTTTCATCTGGCGAGTGAAGATGAAGAGCATAGCTTAAACATTGTGTGTCTCTGTGGT 509
Query 587 CATATCTTCTGTTGGAGATGCATGCTTGAGTCACACAGACCAGTGACCTGCAACAACGCT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CATATCTTCTGTTGGAGATGCATGCTTGAGTCACACAGACCAGTGACCTGCAACAACGCT 569
Query 647 TCTGATTGGTTGTCTAGAGACTTGGAGAAATTGATAGAAGAAGTAGACAAGCCATCGACC 706
||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 570 TCTGATTGGTTGTCTAGAGACCTGAAGAAATTGATAGGAGAAGTAGACAAGCCATCGACC 629
Query 707 GTCTCCTGGATTGATGCCAATACCAAGCCTTGCCCTCATTGCTTTATTCCTGTGGAGATT 766
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 630 CTCTCCTGGATTGAAACCAATACCAAGCCTTGCCCTCATTGCTTTATTCCTGTGGAGCTT 689
Query 767 GATGGTGAACGACCA-TGGGCCCAGTTCTTGACTTGTGTCTGCAGCGGTCGTTTCTGTTG 825
|||| || || |||| ||| ||||||||||||||||| |||||| || |||||||||||
Sbjct 690 GATGATGTAC-ACCAATGGAACCAGTTCTTGACTTGTGCCTGCAGTGGGCGTTTCTGTTG 748
Query 826 GAAGTGTTTTCGGTCACCGGAAACTCACGGAACCTCA-GGATCCTGTTTGGCACCGGCGC 884
||||||||||| |||||||||| ||||||||| || | ||||||||||| ||||||| |
Sbjct 749 GAAGTGTTTTCAGTCACCGGAAGCTCACGGAATCT-ATGGATCCTGTTTTGCACCGGAG- 806
Query 885 G-TTCGAGCAAT 895
| || |||||||
Sbjct 807 GATTTGAGCAAT 818
Score = 819 bits (443), Expect = 0.0
Identities = 521/558 (93%), Gaps = 8/558 (1%)
Strand=Plus/Plus
Query 932 ATTTCGTGTTTGGATCTCTGGAATGCGAGTCAAG-TGAATCTGGTG-AACGCTAAATACG 989
||||||||||||||||||||||| || ||||| | | | |||| | || ||||||| ||
Sbjct 819 ATTTCGTGTTTGGATCTCTGGAAGGCAAGTCAGGTTTCA-CTGGAGCAA-GCTAAATCCG 876
Query 990 AGCTAGAAGCTTTCGAGGAATCCATAATCAAGAAACCTAGTGACTTGAAGGAGCAAGACG 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 AGCTAGAAGCTTTCGAGGAATCCATAATCAAGAAACCTAGTGACTTGAAGGAGCAAGACG 936
Query 1050 TTAAGGTACTAAGGGAAGGACTGATGCTCATTGTTCAGTGCAGACAGTTCCTCAAATGGA 1109
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 937 TTAAAGTACTAAGAGAAGGACTGATGCTCGTTGTTCAGTGCAGACAGTTCCTCAAATGGA 996
Query 1110 GCTGTGCGTACGACTATATCCACACAGAGTATGATATGGCGAAGAGAGAGTACCTGCGAT 1169
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GCTGTGTGTACGACTATCTCCACACAGAGTATGATATGGCGAAGAGAGAGTACCTGCGAT 1056
Query 1170 TCCTCCAACAAAACGCGTCTGGCATTGTCCATAGTTTCTCACAGAGTATAAAGGAGGAAA 1229
|||||||| |||||||||||| | ||||||| |||||||||||| |||||||||||||||
Sbjct 1057 TCCTCCAAGAAAACGCGTCTGCCCTTGTCCACAGTTTCTCACAGGGTATAAAGGAGGAAA 1116
Query 1230 CAGAAGCCAAAGAGCTTACTTGCGGTAAGCTATTGAGCGAGACAACCAACATTGGGAACT 1289
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1117 CAGAAGCCAAAGAGCTTACTCGCGGTAAGCTATTGAGTGAGACAACCAACATTGGGAACT 1176
Query 1290 TCTTTTATCATTTCATCAAGACTTTACGAGAAGGTTT-GCCCGAGGT-ACAGGCGGAGTC 1347
|||||||||||||||||||||||||||||||||||| ||| ||||| | ||||| ||||
Sbjct 1177 ACTTTTATCATTTCATCAAGACTTTACGAGAAGGTTTAGCC-GAGGTGA-AGGCGAAGTC 1234
Query 1348 GTACGACAACTATGGTGGTCCTTACTGGTTGTGCGATCGCTGCACATATGGAAACTCTTG 1407
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1235 GTACGACAACTATGGTGGTCCTTATTGGTTGTGCGATCGCTGCACATATGGAAACTCTTG 1294
Query 1408 GTTCCAGAGGGCCTGTAAGATGTGCTGTGATCCTACTGCGTCTAAGATGGACGAGCTAAG 1467
|||| |||||||||||||||||||||||||||||||||| || || | ||||||||||||
Sbjct 1295 GTTCGAGAGGGCCTGTAAGATGTGCTGTGATCCTACTGCATCCAATACGGACGAGCTAAG 1354
Query 1468 TGATTGATCGCTTAACTA 1485
||||||||| |||| |||
Sbjct 1355 TGATTGATCTCTTAGCTA 1372
> Ahg496560 jgi|Araly1|496560|fgenesh2_kg.8__2376__AT5G63730.1
Length=1519
Score = 431 bits (233), Expect = 9e-120
Identities = 370/434 (85%), Gaps = 17/434 (4%)
Strand=Plus/Plus
Query 240 TTGTTGTTGATGGTGATTTGATCTCCACGCCTTTTTGTTCTCACAAGTTCTG-CA-AAGC 297
||| || ||||| |||||||||||||||||| |||||||||||||||||| | || || |
Sbjct 281 TTGCTGATGATGATGATTTGATCTCCACGCCCTTTTGTTCTCACAAGTTC-GACACAA-C 338
Query 298 TTGTTGGAGCA-AGTATCTTAAGAA-AAATTTCTTCTCTGTGGAGAAAAACCACACTGCA 355
| |||||| | |||||||| |||| || ||| | || ||||||||||| ||| ||||||
Sbjct 339 ATATTGGAG-AGAGTATCTTGAGAAGAACTTT-TACTATGTGGAGAAAATCCAAACTGCA 396
Query 356 ATCTCTTGTCCTGATCGAGATTGTCGAGCTGCTGTTGGACCGGAGACGGTTGAGAAGCTA 415
|||||||||||||||| |||||||||| |||| ||||||||||| ||| ||||||| |||
Sbjct 397 ATCTCTTGTCCTGATCAAGATTGTCGATCTGCGGTTGGACCGGACACGATTGAGAAACTA 456
Query 416 ACCGTACGTGATCAAGCGATGTACGAGTTGTATATTC-TGAAATCTTACCGTG-AGAAAT 473
|| ||||||||||||| |||||||||| ||| | || ||| ||||||| || || ||
Sbjct 457 ACTGTACGTGATCAAGAGATGTACGAGAGGTACA-TCTTGAGATCTTACATTGAAGGAA- 514
Query 474 ACCTGGGATGGAAGCTCAAACTGTGTCCTGCACGGGGTTGCAATTACGTGATTGAGTTTC 533
|| || || || | |||||| ||||||||| |||| |||||||||||| ||||||||||
Sbjct 515 ACAAGGTATTGATGATCAAACAGTGTCCTGCTCGGGATTGCAATTACGTCATTGAGTTTC 574
Query 534 ATCTGG-CAA-G-TGAAGATGAAGAGCATAGCTTAAACATTGTGTGTCTCTGTGGTCATA 590
||| || || | ||| ||||| ||| |||| |||||| | |||||||||||||||||||
Sbjct 575 ATCAGGAGAATGATGATGATGATGAGTATAGTTTAAACGTGGTGTGTCTCTGTGGTCATA 634
Query 591 TCTTCTGTTGGAGATGCATG-CTTGAGTCACACAGACCAGTGACCTGCAACAACGCTTCT 649
|||||||||||||||||| | |||||||||||||||||||||||||||||||| || |||
Sbjct 635 TCTTCTGTTGGAGATGCA-GACTTGAGTCACACAGACCAGTGACCTGCAACAAGGCCTCT 693
Query 650 GATTGGTTGTCTAG 663
||||||||||||||
Sbjct 694 GATTGGTTGTCTAG 707
> Ahg496561 jgi|Araly1|496561|fgenesh2_kg.8__2377__AT5G63750.1
Length=1672
Score = 233 bits (126), Expect = 3e-60
Identities = 425/561 (76%), Gaps = 54/561 (10%)
Strand=Plus/Plus
Query 917 AGAGCAAAACCGGGGATTTCGTGTTTGGATCTCTGGAATGCGAGTCAAG--TGAATCTGG 974
|||||| || || || |||||| |||| | |||||| |||||| ||| | || ||
Sbjct 1099 AGAGCAGAAGTGGAGAATTCGTGCATGGAACACTGGAAGGCGAGTAAAGTTTCAA--TGA 1156
Query 975 TG-AACGCTAAATACGAGCTAGAAGCTTTCGAGGAATCCATA-ATCAAGAAACCTA-GTG 1031
| || |||| || ||| ||| |||||||||||||||||| | || |||| || | ||
Sbjct 1157 AGCAA-GCTATATCCGATCTACAAGCTTTCGAGGAATCCA-ACATGGAGAATCC-AGGTT 1213
Query 1032 ACTTGAAG-GAGCAAGACGTTA-AGGTACTAAGGGAAGGACTGATGCTCATTGTTCAGTG 1089
||||| || ||| ||||| | | | || |||| ||||| ||||||| |||||||| ||
Sbjct 1214 ACTTG-AGCGAGAAAGACATGACAATTA-TAAGAAAAGGATTGATGCTGATTGTTCAATG 1271
Query 1090 CAGAC-AGTTCCTCAAATGGAGCTGTGCGTACGACTA-TATCCACACAGAGTATGATATG 1147
||||| |||| || ||||||||||| | ||||||||| | |||||||||||||||| |||
Sbjct 1272 CAGACAAGTT-CTTAAATGGAGCTGCGTGTACGACTACT-TCCACACAGAGTATGAGATG 1329
Query 1148 GCGAAGAGAGAGTACCTGCGATTCCTCCAA-CAAAACGCG-TCTGGCA-TTGTCCATAGT 1204
||||||| || |||||||||||||| ||| | ||||||| || || |||| | ||
Sbjct 1330 TCGAAGAGGGAATACCTGCGATTCCTGCAAGC-AAACGCGACCT--CACTTGTGGAGGGT 1386
Query 1205 TTCTCACAGAGTATAAAGGAGGA-A-ACAGA-AG-C-C-AAAG--AGC-T-T----AC-- 1248
| |||| ||| | |||| ||||| | | | | || | | || | | | | ||
Sbjct 1387 TACTCAAAGACTCTAAATGAGGAGATAGAAAGAGCCTCGTCAGCTA-CTTCTGAAAACTT 1445
Query 1249 TTG-CG-GT-AAGC-T-A--T--TGAGCGAGACAACCAACATTGGGAACTTCTTTTATCA 1299
||| | || |||| | | | || ||||| | |||||||||||||| |||||||||
Sbjct 1446 TTGTTGCGTCAAGCATAAGGTAACGATTGAGACTATCAACATTGGGAACTACTTTTATCA 1505
Query 1300 TTTCATCAAGACTTTACGAGAAGGTTTGCCCGAGGT-ACAGGCGGAGTCGTACGACA-AC 1357
|||||||||||||||||||||||||||| ||| || | ||| | |||| ||| || ||
Sbjct 1506 TTTCATCAAGACTTTACGAGAAGGTTTGGACGACGTGA-AGGTGAAGTCCTAC-ACCGAC 1563
Query 1358 TATGGTGGTCCTTACTGGTTGTGCGATCGCTGCACATATGGAAACTCTTGGTTCCAGAGG 1417
|||||||||| || ||| | || ||||||||||||| ||||||| |||||||||| | |
Sbjct 1564 TATGGTGGTCTTTTTTGGCTCTGTGATCGCTGCACATTTGGAAACACTTGGTTCCATAAG 1623
Query 1418 GCCTGTAAGATGTGCTGTGAT 1438
| |||| ||||||| |||||
Sbjct 1624 GAGTGTACGATGTGCAGTGAT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5