BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63790.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918162 jgi|Araly1|918162|Al_scaffold_0008_2913 1280 0.0
Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1 147 3e-34
> Ahg918162 jgi|Araly1|918162|Al_scaffold_0008_2913
Length=810
Score = 1280 bits (693), Expect = 0.0
Identities = 777/816 (95%), Gaps = 12/816 (1%)
Strand=Plus/Plus
Query 130 ATGAAGGCGGAGTTGAATTTGCCGGCGGGATTCCGATTTCATCCGACGGACGAAGAGCTT 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGGCGGAGTTGAATTTGCCGGCGGGATTCCGATTTCATCCGACGGACGAAGAGCTT 60
Query 190 GTCAAGTTCTATCTTTGCCGGAGATGTGCGTCAGAACCGATTAACGTTCCGGTTATCGCA 249
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GTTAAGTTCTATCTTTGCCGGAGATGCGCGTCGGAACCGATTAACGTTCCGGTTATCGCA 120
Query 250 GAGATTGA-CTTGTACAAATTCAATCCATGGGAGCTTCCAGAAATGGCGTTGTACGGTGA 308
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GAGATTGATCT-GTATAAATTCAATCCATGGGAGCTTCCAGAAATGGCGTTGTACGGAGA 179
Query 309 GAAAGAATGGTACTTCTTCTCGCATAGAGACCGGAAATACCCAAACGGGTCGAGACCAAA 368
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 180 GAAAGAATGGTACTTCTTCTCACATAGAGACCGGAAATACCCAAACGGTTCGAGACCAAA 239
Query 369 CCGGGCAGCTGGAACCGGTTATTGGAAAGCGACTGGAGCTGATAAACCGATCGGAAAACC 428
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 CCGGGCAGCTGGAAGCGGTTATTGGAAAGCGACTGGAGCAGATAAACCGATCGGAAAACC 299
Query 429 GAAGACGTTAGGGATTAAGAAAGCACTCGTCTTCTACGCAGGAAAAGCTCCGAAAGGGAT 488
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 300 GAAGACATTAGGGATTAAGAAAGCACTGGTCTTCTACGCAGGAAAAGCTCCGAAAGGGGT 359
Query 489 TAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTAC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTAC 419
Query 549 CA--A-CAAGAAGAACAACTTAAGACTTGATGATTGGGTTTTGTGTCGGATATACAATAA 605
|| | |||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 420 CACCAACAAGAAGAACAATTTGCGACTTGATGATTGGGTTTTGTGTCGGATTTACAATAA 479
Query 606 GAAAGGAACAATGGAGAAGTATT-TACCGGCGGCGGCTGAGAAACCGACGGAAAAGATGA 664
||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||
Sbjct 480 GAAAGGAACAATGGAGAAGTATTAT-CCGGCGGCGGATGAGAAACCGACGGCGAAGATGA 538
Query 665 GTACGTCGGACTCAAGATGCTCAAGTCACGTGATTTCACCGGACGTCACGTGTTCTGATA 724
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 GTACGTCGGACTCGAGATGCTCAAGTCACGTGATTTCACCGGACGTCACGTGTTCCGATA 598
Query 725 ACTGGGAGGTTGAGAGTGAGCCCAAATGGATTAATCTGGAAGACGCGTTAGAGGCATTTA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 ACTGGGAGGTTGAGAGTGAGCCCAAATGGATTAATCTGGAAGACGCGTTAGAGGCGTTTA 658
Query 785 ATGATGACACGTCCATGTTTAGTTCCATTGGTTTGTTGCAAAATGACGCCTTTGTTCCTC 844
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 659 ATGA---CACGTCCATGTTTAGTTCCATTGATTTGTTGCAAAATGACGCCTTTGTCCCTC 715
Query 845 AGTTT-CAGTACCAGTCCTCCGATTTCGTCGATTCGTTTCAGGACCCGTTCGAGCAGAAA 903
|||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 716 AGTTCGC-GTACCAGTCCTCCGAGTTCGTCGATTCGTTTCAGGACCCGTTGGAGCAGAAA 774
Query 904 CCGTTCTTGAATTGGAATTTTGCTCCTCAAGGGTAA 939
||||||||||||||||||||||||||||||||||||
Sbjct 775 CCGTTCTTGAATTGGAATTTTGCTCCTCAAGGGTAA 810
> Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1
Length=1618
Score = 147 bits (79), Expect = 3e-34
Identities = 82/83 (99%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 1234 GACCAACCATTATGAATCATATATATATTCAATGAAGCATGAGCTTATTTCTTCTTTAAT 1293
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1618 GACCAACCATTATGAATCATATATATATTCAATGAAGCATGAGCTTATTT-TTCTTTAAT 1560
Query 1294 GAAGCAATGTACATTTTTCTCCA 1316
|||||||||||||||||||||||
Sbjct 1559 GAAGCAATGTACATTTTTCTCCA 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5