BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63800.1
Length=2596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496568 jgi|Araly1|496568|fgenesh2_kg.8__2384__AT5G63800.1 3618 0.0
> Ahg496568 jgi|Araly1|496568|fgenesh2_kg.8__2384__AT5G63800.1
Length=2409
Score = 3618 bits (1959), Expect = 0.0
Identities = 2293/2448 (94%), Gaps = 47/2448 (2%)
Strand=Plus/Plus
Query 1 AACACATCAACAGAGGATCCAAACTTTTCCCAATTATTGCAAGTCAATCGATTTGT-T-T 58
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AACACCTCAACAGAGGATCCAAACTTTTCCCAATTATTGCAAGTCAATCGATTTGTATAT 60
Query 59 ATCTATATAAAGCTCCCAAATCTCAAATCTCAAATCTCAAATTTTTTATTAAACGCCTAC 118
|| |||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 61 ATATATATAAAGCTCCCAAATCTCAAATCTC--A----AAA--TTTTATTAAACGCCTAC 112
Query 119 ATATATTACTCACACTTGTTTTCAGATCATAAAGTTTTTTCTTGGATTTATATATAATGC 178
|||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 113 ATATATTACTCACACTTGTTTTCAGATCAT--A------------A---ATATATAATGC 155
Query 179 ACTAATACATACACACCCACATGCTTACACACATGTTCGAACTGTAATCAGTAAAAGAAA 238
||||| ||||||| | ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 156 ACTAACACATACA-A-CCACATGCTTACACACATGTTCGAACTGTAACCAGTTAAAGAAA 213
Query 239 CATCAGAGAGGAAGAGAAGGAGAAGAAAAGATGGAGATG-GGTCGTCTGGTCTTCGGGTT 297
||||||||||||||||||| ||||| |||||||||| | || | || ||||||||||||
Sbjct 214 CATCAGAGAGGAAGAGAAGAAGAAGGAAAGATGGAG--GCGG-C-TCGGGTCTTCGGGTT 269
Query 298 GTGTTTGATTCTTATTGTGGGTACGTTTCTTGAATTCTCCGGCGGTGCTACGGCGGCGAA 357
||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 270 GTGTTTGATTC---TTGTGGGTATGTTTCTTGTATTCTCCGGCGGTGCTACGGCGGCGAA 326
Query 358 GGGAGTAACGTACGACGGACGGTCTTTGATAATCGATGGACAGAGGAAGCTTCTCTTCTC 417
|||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 327 GGGAGTTACGTACGATGGACGGTCTTTGATTATCGATGGACAGAGGAAACTTCTCTTCTC 386
Query 418 CGGTTCCATCCACTATCCTCGCAGCACACCCGAGATGTGGCCGTCTCTGATAAAAAAGAC 477
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 387 CGGTTCCATTCACTATCCTCGCAGCACGCCCGAGATGTGGCCGTCTCTGATAAAAAAGAC 446
Query 478 AAAGGAAGGAGGCATCGATGTGATCCAAACGTACGTTTTCTGGAACCTCCATGAGCCTAA 537
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AAAGGAGGGGGGCATCGATGTGATCCAAACGTACGTTTTCTGGAACCTCCATGAGCCTAA 506
Query 538 GCTTGGACAGTATGATTTTAGTGGAAGAAACGATTTAGTGAAGTTTATTAAAGAAATTAG 597
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GCTCGGACAGTATGATTTTAGTGGAAGAAACGATTTAGTGAAGTTTATTAAAGAAATTAG 566
Query 598 ATCACAAGGTCTCTATGTCTGTCTACGTATTGGACCCTTCATCGAAGCCGAGTGGAATTA 657
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 567 ATCACAAGGTCTCTATGTCTGTCTACGTATTGGACCCTTCATAGAAGCAGAGTGGAATTA 626
Query 658 CGGGGGATTGCCATTTTGGTTACGGGATGTACCCGGTATGGTATACCGAACCGACAATGA 717
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 627 CGGGGGATTGCCATTTTGGTTAAGAGATGTACCCGGTATGGTATACCGAACCGACAATGA 686
Query 718 GCCCTTCAAGTTCCACATGCAAAAATTCACCGCTAAGATCGTAGATTTGATGAAATCTGA 777
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 687 ACCCTTCAAGTTCCACATGCAAAAATTCACCACTAAGATCGTAAATTTGATGAAATCTGA 746
Query 778 GGGCTTATATGCTTCTCAAGGAGGTCCAATTATTCTTTCTCAGATCGAGAACGAGTATGC 837
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 747 GGGCTTATATGCTTCTCAAGGCGGTCCAATTATTCTTTCTCAGATCGAGAACGAGTATGC 806
Query 838 AAACGTGGAGGGGGCTTTCCATGAGAAAGGAGCATCGTACATCAAGTGGGCAGGTCAAAT 897
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 807 AAACGTGGAGGCGGCTTTCCATGAGAAAGGAGCATCGTACATCAAGTGGGCAGGCCAAAT 866
Query 898 GGCGGTCGGGCTTAAGACCGGAGTGCCATGGATCATGTGCAAGTCGCCCGACGCTCCTGA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GGCGGTCGGGCTTAAGACCGGAGTGCCATGGATCATGTGCAAGTCGCCCGACGCTCCTGA 926
Query 958 TCCCGTGATCAATACCTGCAACGGGATGAAATGCGGCGAGACTTTT-CCTGGACCAAACT 1016
||||||||||||||| ||||||||||||| |||||||||||| ||| || ||||||||||
Sbjct 927 TCCCGTGATCAATACGTGCAACGGGATGAGATGCGGCGAGACGTTTGCC-GGACCAAACT 985
Query 1017 CACCCAATAAGCCGAAAATGTGGACTGAGGATTGGACTTCATTCTTTCAGGTTTATGGAA 1076
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 986 CACCTAATAAGCCGAAAATGTGGACTGAGGATTGGACATCATTCTTTCAGGTTTATGGAA 1045
Query 1077 AAGAGCCTTATATTAGATCTGCTGAGGATATTGCTTTCCATGCCGCTCTTTTCGTTGCAA 1136
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1046 CAGAGCCCTATATTAGATCTGCCGAGGATATTGCTTTCCATGCCGCTCTTTTCATTGCAA 1105
Query 1137 AAAATGGAAGTTACATCAACTATTACATGTACCATGGTGGAACAAACTTTGGAAGGACTT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AAAATGGAAGTTACATCAACTATTACATGTACCATGGTGGAACAAACTTTGGAAGGACTT 1165
Query 1197 CATCTTCGTATTTCATTACAGGATACTATGATCAAGCTCCTCTCGACGAATACGGTCTTT 1256
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1166 CATCTTCATATTTCATTACAGGATACTATGACCAAGCTCCTCTTGACGAATACGGTCTTT 1225
Query 1257 TAAGACAGCCTAAGTACGGTCATTTGAAGGAGCTTCACGCTGCGATAAAATCCTCTGCAA 1316
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1226 TAAGACAGCCTAAGTACGGTCATTTGAAGGAGCTTCACGCTGCAATAAAATCCTCTGCAA 1285
Query 1317 ATCCTCTGCTTCAAGGAAAGCAAACGATTCTCTCCTTGGGACCAATGCAACAAGCTTATG 1376
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1286 ATCCTCTGCTTCAAGGGAAGCAAACGATTCTATCCTTGGGACCAATGCAACAGGCTTATG 1345
Query 1377 TCTTTGAAGACGCGAACAATGGATGCGTTGCGTTTCTGGTAAACAATGACGCTAAAGCCA 1436
||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 1346 TCTTTGAAGACGCGAGCAGTGGATGCGTTGCGTTTCTGGTGAACAATGACGCCAAAGTCA 1405
Query 1437 GTCAAATACAATTCAGAAACAA-TGCGTATAGCTTGAGTCCCAAGTCAATTGGTATTCTT 1495
|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 1406 TTCAAATACAATTCAGAAA-AAGTTCGTATAGCTTGAGTCCCAAGTCAATTGGTATTCTT 1464
Query 1496 CAGAACTGCAAAAACCTAATTTATGAAACTGCAAAAGTGAATGTGAAGATGAATACGAGA 1555
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||
Sbjct 1465 CAGAACTGCAAAAACCTAATTTATGAAACAGCAAAAGTGAATGTGGAGAAGAATAAGAGA 1524
Query 1556 GTTACAACGCCGGTTCAAGTGTTCAACGTTCCCGATAACTGG-AATTTGTTTAGAGAAAC 1614
||||||||||||||||||||||||||||||||||| || ||| || | |||||||||||
Sbjct 1525 GTTACAACGCCGGTTCAAGTGTTCAACGTTCCCGAGAAGTGGGAAGGT-TTTAGAGAAAC 1583
Query 1615 AATCCCTGCATTCCCAGGCACATCTTTGAAGACAAATGCTTTGTTGGAACACACTAATTT 1674
||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1584 AATTCCAGCATTCTCAGGCACATCTTTGAAGGCAAATGCTTTGTTGGAACACACTAATTT 1643
Query 1675 GACAAAGGACAAAACTGATTATCTTTGGTACACTTCAAGCTTTAAGCTGGATTCACCCTG 1734
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1644 GACCAAGGACAAAACTGATTATCTTTGGTACACTTCAAGCTTTAAGCCGGATTCACCCTG 1703
Query 1735 CACGAACCCGTCTATCTACACAGAATCATCAGGACATGTTGTCCACGTGTTCGTCAACAA 1794
|||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 1704 CACGAACCCGTCTATCTACATTGAATCATTAGGACATGTTGTTCACGTGTTCGTCAACAA 1763
Query 1795 TGCACTAGCAGGATCTGGACATGGAAGCAGAGACATAAGGGTAGTTAAACTACAAGCTCC 1854
||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 1764 CGCACTAGCAGGATCTGGACATGGAAGCAGAGACATAAAGGTAGTTAAACTTCAAGTTCC 1823
Query 1855 GGTTAGCTTAATCAATGGACAAAACAATATATCGATCCTCAGCGGCATGGTTGGTCTACC 1914
|| |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1824 GGCTAGCTTAACCAATGGACAAAACAGTATATCAATCCTCAGCGGCATGGTTGGTCTACC 1883
Query 1915 GGACTCTGGAGCTTACATGGAGAGGAGATCTTATGGACTAACCAAAGTACAAATTAGCTG 1974
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1884 GGACTCTGGAGCTTACATGGAGAGGAAATCTTATGGACTAACCAAAGTACAAATCAGCTG 1943
Query 1975 TGGCGGGACAAAACCCATCGATTTGAGTAGATCTCAATGGGGTTACTCGGTGGGTTTGCT 2034
||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1944 TGGTGGGACAAAACCAATCGATTTGAGTGGATCTCAATGGGGTTACTCGGTGGGTTTGCT 2003
Query 2035 TGGAGAGAAAGTTAGGTTATATCAATGGAAGAATTTAAATAGAGTGAAGTGGAGTATGAA 2094
||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||
Sbjct 2004 TGGAGAGAAAGTTAGGTTACAGCAATGGAGGAATTTAAATAGAGTGAACTGGAGTATGAA 2063
Query 2095 TAAAGCTGGACTAATTAAGAACCGCCCCCTCGCTTGGTACAAGACAACGTTTGATGGGCC 2154
||| |||||||| |||||||||||||| |||| ||||||||||| || |||||||||||
Sbjct 2064 TAATGCTGGACTCATTAAGAACCGCCCTCTCGTTTGGTACAAGATAATATTTGATGGGCC 2123
Query 2155 GAATGGAGATGGGCCCGTGGGCCT-ACACATGTCGAGTATGGGTAAAGGAGAAATTTGGG 2213
||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||
Sbjct 2124 GAATGGAGATGGGCCAGTGGGGCTGA-ACATGTCGAGTATGGGTAAAGGAGAAATTTGGG 2182
Query 2214 TGAATGGTGAAAGCATTGGTCGTTATTGGGTCTCGTTTCTCACCCCTGCTGGACAACCTT 2273
|||||||||||||||||||||||||||||||||| || ||||| ||| ||||||| ||||
Sbjct 2183 TGAATGGTGAAAGCATTGGTCGTTATTGGGTCTCATTCCTCACTCCTTCTGGACATCCTT 2242
Query 2274 CTCAATCTATATATCATATTCCTCGGGCGTTCTTAAAACCATCTGGAAATTTATTGGTGG 2333
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2243 CTCAATCTATATATCATATTCCTCGGGAGTTTTTAAAACCATCTGGAAATTTATTGGTGG 2302
Query 2334 TATTTGAAGAGGAAGGTGGTGATCCTCTTGGGATATCTTTGAATACAATATCGGTTGTTG 2393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2303 TATTTGAAGAGGAAGGTGGTGATCCTCTTGGGATATCTTTGAATACAATATCGGTTATTG 2362
Query 2394 GTTCGAGTCAAGCTCAATCTCAA-TTCTCCTGAAGATTAtttttttAA 2440
|||||| | ||||||||||||| || ||||||| |||||||||||||
Sbjct 2363 GTTCGAACCGAGCTCAATCTCAACTT-TCCTGAATATTATTTTTTTAA 2409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97891929650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5