BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63810.1
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951190 jgi|Araly1|951190|scaffold_803077.1 3633 0.0
Ahg941048 jgi|Araly1|941048|scaffold_601592.1 156 9e-37
> Ahg951190 jgi|Araly1|951190|scaffold_803077.1
Length=2267
Score = 3633 bits (1967), Expect = 0.0
Identities = 2177/2278 (96%), Gaps = 15/2278 (1%)
Strand=Plus/Plus
Query 144 CGACGAAGAAGAGCTAACAACGATAATGAATCGGGTTACTACTGAAAGCATTGCGTCTAC 203
|||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||
Sbjct 1 CGACGAAGAAGAGCTAAC-A--ATAATGAATCGGG-T--TACTGAAAGCATTGCGTCTAC 54
Query 204 GGCGATACTGGTGGTGATGGTGTTTCTCTTCTCGTGGAGATCTATCGAGGCGGCGAATGT 263
|||||| ||| ||| ||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 55 GGCGATTCTGCTGGCGATGGTGTTTCTCTTGTCGTGGAGATCTATCGACGCCGCGAATGT 114
Query 264 ATCCTACGACCACCGTTCTCTCACCATCGGCAATCGCCGTCAGCTCATTATCTCCGCCGC 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ATCCTACGACCACCGTTCTCTCACCATCGGCAATCGCCGTCAGCTCATTATCTCCGCCGC 174
Query 324 CATTCACTATCCCAGAAGCGTCCCTGCTATGTGGCCATCTCTTGTTCAAACAGCAAAAGA 383
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 175 CATTCACTATCCCAGAAGCGTTCCAGCTATGTGGCCATCACTTGTTCAAACAGCAAAAGA 234
Query 384 AGGAGGCTGCAACGCAATCGAGTCTTATGTCTTCTGGAATGGCCATGAGCCATCTCCTGG 443
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 235 AGGAGGCTGCAACGCAATTGAGTCTTATGTGTTTTGGAATGGCCATGAGCCATCTCCTGG 294
Query 444 AAAGTATTATTTTGGTGGCCGGTATAATATAGTGAAGTTTATCAAGATTGTTCAACAAGC 503
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 295 AAAGTATTATTTTGGTGGCCGGTATAATATAGTGAAGTTCATCAAGATTGTTCAGCAAGC 354
Query 504 TGGAATGCATATGATTCTACGAATTGGTCCTTTTGTTGCCGCCGAGTGGAATTACGGGGG 563
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 355 TGGAATGCATATGATTCTACGAATTGGTCCTTTTGTTGCGGCCGAGTGGAATTTCGGGGG 414
Query 564 AGTCCCGGTTTGGCTGCATTACGTGCCAGGAACAGTCTTCAGAGCGGATAATGAGCCATG 623
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 415 AGTCCCGGTTTGGCTGCATTACGTGCCAGGAACAGTCTTCAGGGCGGATAATGAGCCATG 474
Query 624 GAAGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAACAAGAGAAGCT 683
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 475 GAAGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAAAAAGAGAAGCT 534
Query 684 TTTTGCACCTCAGGGCGGTCCAATAATCTTGTCTCAGGTGGAAAACGAGTACGGGTATTA 743
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 535 TTTCGCACCACAGGGCGGTCCAATTATCTTGTCTCAGGTGGAAAACGAGTACGGGTATTA 594
Query 744 TGAAAAGGATTACGGAGAAGGAGGGAAAAGGTATGCTCAATGGTCTGCTTCTATGGCTGT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGAAAAGGATTACGGAGAAGGAGGGAAAAGGTATGCTCAATGGTCTGCTTCTATGGCTGT 654
Query 804 TTCACAGAATATTGGTGTTCCATGGATGATGTGCCAGCAATGGGATGCTCCTCCCACTGT 863
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 655 TTCACAGAACATTGGTGTTCCATGGATGATGTGCCAGCAATGGGATGCCCCTCCGACTGT 714
Query 864 GATTAGTACCTGCAATGGCTTTTACTGTGACCAATTCACACCTAATACACCAGATAAACC 923
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 715 GATTAGTACCTGCAATGGCTTTTACTGTGACCAGTTCACACCTAATACACTAGATAAACC 774
Query 924 CAAGATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACTTTTGGAGGCAGAGACCCTCA 983
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 775 CAAGATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACGTTTGGAGGCAGAGACCCTCA 834
Query 984 CAGACCAGCAGAGGATGTAGCCTACTCTGTTGCTCGGTTTTTCGGGAAAGGTGGAAGTGT 1043
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 835 CAGACCAGCAGAGGATGTAGCTTACTCTGTTGCTCGATTTTTCGGGAAAGGTGGAAGTGT 894
Query 1044 TCACAACTACTACATGTATCACGGAGGAACTAATTTTGGACGTACTTCAGGAGGACCTTT 1103
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 895 TCACAATTACTACATGTATCATGGAGGAACGAATTTTGGACGTACTTCAGGAGGACCTTT 954
Query 1104 TATCACTACAAGCTATGACTATGAAGCTCCCATCGATGAGTATGGATTGCCTAGATTACC 1163
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 955 TATCACTACAAGTTATGACTATGAAGCTCCGATCGATGAGTATGGATTGCCTAGATTACC 1014
Query 1164 AAAATGGGGACACCTTAAGGATCTCCACAAAGCTATAATGCTCTCTGAAAACTTGCTGAT 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAAATGGGGACACCTTAAGGATCTCCACAAAGCTATAATGCTCTCTGAAAACTTGCTGAT 1074
Query 1224 -AAGTGGCGAGCATCAAAATTTTACATTAGGCCATTCACTCGAGGCTGATGTGTACACAG 1282
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CAA-TGGCGAGCATCAAAATTTTACATTAGGCCATTCACTCGAGGCTGATGTGTACACAG 1133
Query 1283 ACTCTTCGGGAACTTGTGCTGCGTTTCTGTCAAACTTGGATGATAAAAATGACAAGGCGG 1342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1134 ACTCTTCGGGAACTTGTGCTGCGTTTCTGTCAAACTTGGATGATAAAAATGACAAGACGG 1193
Query 1343 TGATGTTTCGAAACACATCATACCACTTGCCTGCTTGGTCAGTTAGCATTCTACCTGACT 1402
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGATGTTTCGAAACACGTCATACCACTTGCCTGCTTGGTCAGTTAGCATTCTACCTGACT 1253
Query 1403 GCAAGACCGAGGTTTTCAACACAGCAAAGGTAACTTCGAAGTCCTCCAAGGTTGAAATGC 1462
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GCAAGAACGAGGTTTTCAACACAGCAAAGGTAACTTCGAAGTCCTCCAAGGTTGAAATGT 1313
Query 1463 TACCTGAAGATTTGAAATCTTCATCAGGTCTTAAATGGGAAGTATTCTCGGAGAAACCGG 1522
|||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1314 TACCTGGAGATTTGAGATCTTCATCAGGTCTTAAATGGGAAGTGTTCTCCGAGAAACCGG 1373
Query 1523 GTATTTGGGGCGCAGCAGATTTTGTGAAAAATGAACTTGTTGACCACATCAACACCACAA 1582
|||||||||| | |||||| |||||||||| |||||||| || || |||||||||||||
Sbjct 1374 GTATTTGGGGAGAAGCAGACATTGTGAAAAACGAACTTGTCGATCATATCAACACCACAA 1433
Query 1583 AGGACACAACTGACTATCTTTGGTACACAACAAGTATAACAGTCAGTGAAAATGAAGCGT 1642
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 1434 AGGACACAACTGACTATCTTTGGTACACAACAAGTATAATAGTCAGTGCTAATGAAGAGT 1493
Query 1643 TCTTGAAGAAAGGAAGCTCC-CCGGTTCTGTTTATTGAATCAAAAGGG-CATACTCTTCA 1700
|| | ||||||||||| ||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 1494 TCCTAAAGAAAGGAAG-TCCTCCTGTTCTGTTTATTGAATCAAA-GGGACATACTCTTCA 1551
Query 1701 TGTTTTCATCAACAAAGAGTACTTAGGAACTGCGACAGGGAATGGGACTCATGTGCCTTT 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 TGTTTTCATCAACAAAGAGTACTTAGGAACTGCGACAGGGAATGGGACTCATGTGCCTTT 1611
Query 1761 CAAACTCAAGAAACCAGTTGCTCTCAAAGCGGGCGAAAACAATATTGATTTGCTTAGCAT 1820
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1612 CAAACTCAAGAAATCAGTTGCTCTCAAGGCGGGCGAAAACAATATTGATTTGCTTAGCAT 1671
Query 1821 GACTGTTGGTCTAGCGAATGCAGGATCCTTTTACGAATGGGTTGGAGCTGGACTTACAAG 1880
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GACTGTTGGTCTTTCGAATGCAGGATCCTTTTACGAATGGGTTGGAGCTGGACTTACAAG 1731
Query 1881 CGTCTCAATCAAAGGTTTCAACAAGGGCACATTGAATTTGACAAACAGCAAATGGTCCTA 1940
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CGTCTCATTTAAAGGTTTCAACAAGGGCACATTGAATTTGACAAACAGCAAATGGTCCTA 1791
Query 1941 CAAGCTCGGCGTGGAAGGAGAGCATCTAGAACTGTTCAAGCCAGGTAACTCCGGGGCTGT 2000
|||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1792 CAAGCTAGGCGTGCAAGGAGAGCATCTAGAACTGTTCAAGCCAGGTAACTCAGGGGCTGT 1851
Query 2001 GAAATGGACGGTGACTACGAAACCTCCCAAGAAACAGCCTCTGACTTGGTATAAGGTTGT 2060
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1852 GAAATGGACGGTGACTACGAAACCTCCAAAGAAACAGCCTTTGACTTGGTATAAGGTTGT 1911
Query 2061 GATAGAGCCACCTTCTGGGAGTGAGCCGGTTGGGCTTGATATGATCAGTATGGGGAAAGG 2120
| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1912 GGTAGACCCACCTTCTGGGAGTGAGCCGGTTGGGCTTGATATGATCAGTATGGGAAAAGG 1971
Query 2121 AATGGCATGGTTAAATGGTGAAGAGATAGGAAGATATTGGCCCAGGATTGCTAGAAAGAA 2180
|||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 1972 CATGGCATGGTTAAACGGGGAAGAGATAGGAAGATATTGGCCCAGGATAGCAAGAAAGAG 2031
Query 2181 CAGCCCGAACGACGAGTGCGTAAAAGAATGCGATTACAGAGGCAAATTCATGCCGGATAA 2240
|| |||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 CACCCCGAATGATGAATGCGTAAAAGAATGCGATTACAGAGGCAAATTCATGCCGGATAA 2091
Query 2241 ATGCCTAACTGGATGTGGAGAGCCATCTCAGAGATGGTATCATGTTCCAAGATCATGGTT 2300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 ATGCCTAACTGGATGTGGAGAGCCATCTCAGAGATGGTATCATGTTCCAAGATCATGGTT 2151
Query 2301 TAAGTCTTCCGGGAATGAGCTGGTGATCTTCGAGGAGAAAGGCGGCAATCCCATGAAGAT 2360
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 2152 CAAGTCTTCCGGGAATGAGCTGGTGATCTTCGAGGAGAAAGGAGGCGATCCCATGAAGAT 2211
Query 2361 AAAGTTGTCCAAAAGGAAAGTATCGGTGGTGTAAGCAAGTAGAACAAGTTAAA-GATG 2417
|||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 2212 AAAGTTATCCAAAAGGAAAGTTTCGGTGGTGTAAGCAA--AGAACAAGTTAAAAGATG 2267
> Ahg941048 jgi|Araly1|941048|scaffold_601592.1
Length=730
Score = 156 bits (84), Expect = 9e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 626 AGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAACAAGAGAAGCTTT 685
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 550 AGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAAAAAGAGAAGCTTT 609
Query 686 TTGCACCTCAGGGCGGTCCAATAATCTTGTCTCAGG 721
| ||||| |||||||||||||| |||||||||||||
Sbjct 610 TCGCACCACAGGGCGGTCCAATTATCTTGTCTCAGG 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98349012590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5