BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63820.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332599 jgi|Araly1|332599|fgenesh1_pm.C_scaffold_8001942 641 0.0
Ahg951192 jgi|Araly1|951192|scaffold_803079.1 226 2e-58
Ahg952186 jgi|Araly1|952186|scaffold_44600001.1 206 2e-52
> Ahg332599 jgi|Araly1|332599|fgenesh1_pm.C_scaffold_8001942
Length=687
Score = 641 bits (347), Expect = 0.0
Identities = 526/605 (87%), Gaps = 41/605 (7%)
Strand=Plus/Plus
Query 73 GGTTTTGATTATGGATTTGACTTTACTGGCATAGT-TACGCCTCCTGTGAGCACTGATTA 131
|||||||||||||||| ||||||| | ||||||| | |||||||||||||| ||||||
Sbjct 97 GGTTTTGATTATGGATCTGACTTT--T-GCATAGTCGA-GCCTCCTGTGAGCAATGATTA 152
Query 132 TGATGTCACCCTTTATGCTAAGCTTGGACTTTACTGCTACAATTTTCAAAAGGGGACAAA 191
||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 153 CGATGTCACCATTTATGCTAGGCTTGGACTCTACTGCTACAATTTTCAAAAGGGGACAAA 212
Query 192 CTTAAAGTTTGTGCGCTGGGAAAAGTATAATACGTCTACGGGCACTGCTTACATTGATAA 251
||| ||||||||||||||||||||||||||||| | | | |||| ||||| |||| |
Sbjct 213 CTTTAAGTTTGTGCGCTGGGAAAAGTATAATAC-T-GA-GTTCACTTCTTACTTTGACCA 269
Query 252 CTACATCACTTTGGAGGCAATGGATCCGTCCTGCAACTCTGTCTTCTCTTTTCAGACTGT 311
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 270 CTACATCACTTTGGCGGCAAGGGATCCGTCCTGCAACTCTTTCTTCTCTTTTCAGACTGT 329
Query 312 GTTCAGTGCTGCTGGATGTTATAACCAAGATACTTATCATGTACAAGAC-TGGAGGGTCT 370
|||||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||
Sbjct 330 GTTCAGTGCTGCTGGATGTTCTACCCAAGATACTTATCGTGTACAA-ACCTGGAGGGTCT 388
Query 371 TGGCCTGCAGACCAACATGTGGCAAGTCTGTGAATGAATATTTTGACCGGCATGAGGCAA 430
||||||||||||| ||||||||||| |||||||||| || || | || | ||
Sbjct 389 TGGCCTGCAGACCCTCATGTGGCAAGCCTGTGAATGA-TAATT-G---GG-ACC-GG--- 438
Query 431 TGGATCCCTTCTACACAGGTAAAATGCCCAAATGGTTGTCTGATGACGCCTTGGCCTTTG 490
| | | ||| ||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 439 -G-A-C------ACA--GGTGAAATGCCCAAATGGTTGTCTGATGAGGCCTTGGCCACTG 487
Query 491 ACAACAAAAAGTATTACGTGGTGCAAGAATCAGA-CTTGCATGAGAATGACTGGCTGCTT 549
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 488 ACAACAAAAAGTATTACGTGGTGCAAGAATCAGAGCT-GCATGAGAATGACTGGCTGCAT 546
Query 550 GTATTCATGGAAATGGTATTCTTACAAGAAAAATCCT------G-TGTTTCTTCAAGTGA 602
||||||||||||||| ||||||||||| ||| |||| | |||||||||||||||
Sbjct 547 CTATTCATGGAAATGGCATTCTTACAAGCAAA-TCCTCATATAGGTGTTTCTTCAAGTGA 605
Query 603 TCACAAAGCTATCATAAGGAAAACCATGGATGGGGTACCAGAACACATGAGTCTTGAAAT 662
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 606 TCACAAAGCTATAATAAGGAAAACCATGGATGGGATACCAGGACACATGAGTCTTGAAAT 665
Query 663 TGCTT 667
|||||
Sbjct 666 TGCTT 670
> Ahg951192 jgi|Araly1|951192|scaffold_803079.1
Length=739
Score = 226 bits (122), Expect = 2e-58
Identities = 183/213 (86%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 360 CTGGAGGGTCTTGGCCTGCAGACCAACATGTGGCAAGTCTGTGAATGAATATTTTGACCG 419
||||||| |||| ||||||||||| ||||| |||| ||||| |||| |||| |||||
Sbjct 263 CTGGAGGATCTTTGCCTGCAGACCCACATGCAACAAGCCTGTGGATGATTATTGGGACCG 322
Query 420 GCATGAGGCAATGGATCCCTTCTACACAGGTAAAATGCCCAAATGGTTGTCTGATGACGC 479
| |||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 323 GGATGAAGAAATAGATCCCTTCTACACAGGTGAAATGCCCAAATGGTTGTCTGATGAGGC 382
Query 480 CTTGGCCTTTGACAACAAAAAGTATTACGTGGTGCAAGAATCAGA-CTTGCATGAGAATG 538
|||| || |||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 383 CTTGACCAGTGACAATAAAAAGTATTACGTGGTGCAAGAATCAGAGCT-GCATGAGAATG 441
Query 539 ACTGGCTGCTTGTATTCATGGAAATGGTATTCT 571
| ||||||| | ||||||| || || | |||||
Sbjct 442 AATGGCTGCATCTATTCATCGAGATCGCATTCT 474
Score = 106 bits (57), Expect = 2e-22
Identities = 65/69 (94%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 599 GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGGTACCAGAACACATGAGTCTTG 658
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 637 GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGATAACAGAACATATGAGTCTTG 696
Query 659 AAATTGCTT 667
|| ||||||
Sbjct 697 AAGTTGCTT 705
> Ahg952186 jgi|Araly1|952186|scaffold_44600001.1
Length=856
Score = 206 bits (111), Expect = 2e-52
Identities = 186/220 (85%), Gaps = 13/220 (6%)
Strand=Plus/Plus
Query 103 ATAGTTACGCCTCCTGTGAGC-ACTGATTATG---ATGTCACCCTTTATGCTAAGCTTGG 158
||||||| ||||| | || || | |||||||| || ||||||||||||||| ||||||
Sbjct 177 ATAGTTAGGCCTCGTTTGCGCGA-TGATTATGATCATCTCACCCTTTATGCTAGGCTTGG 235
Query 159 ACTTTACTGCTACAATTTTCAAAAGGGGACAAACTTAAAGTTTGTGCGCTGGGAAAAGTA 218
|| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 236 TCTCTACTGCTACAATTTTCACAAGGGGACAAGCTTAAAGTTTGTACGCTGGGAAAAGTA 295
Query 219 TAATACGTCTACGGGCACTGCTTACATTG-A-TAACTACATCACTTTGGAGGCAATGGAT 276
|||||| | | | |||| ||||| ||| | || |||||||||||||||||||||||||
Sbjct 296 TAATAC-TAT--GTACACTTCTTAC-TTGGACTA-CTACATCACTTTGGAGGCAATGGAT 350
Query 277 CCGTCCTGCAACTCTGTCTTCTCTTTTCAGACTGTGTTCA 316
||| ||| ||||| |||||||||||| || | | ||||||
Sbjct 351 CCGGCCTCCAACTGTGTCTTCTCTTT-CAAATTTTGTTCA 389
Score = 193 bits (104), Expect = 2e-48
Identities = 155/180 (86%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 393 CAAGTCTGTGAATGAATATTTTGACCGGCATGAGGCAATGGATCCCTTCTACACAGGTAA 452
|||| ||||| |||| |||| |||||| |||| | ||| | |||||||||||||||| |
Sbjct 413 CAAGCCTGTGGATGATTATTGGGACCGGGATGAAGAAATAGTTCCCTTCTACACAGGTGA 472
Query 453 AATGCCCAAATGGTTGTCTGATGACGCCTTGGCCTTTGACAACAAAAAGTATTACGTGGT 512
|||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||
Sbjct 473 AATGCCCAAATGGTTGTCTGATGAGGCCTTGACCAGTGACAATAAAAAGTATTACGTGGT 532
Query 513 GCAAGAATCAGA-CTTGCATGAGAATGACTGGCTGCTTGTATTCATGGAAATGGTATTCT 571
|||||||||||| || |||||||||||| ||||||| | ||||||| || || | |||||
Sbjct 533 GCAAGAATCAGAGCT-GCATGAGAATGAATGGCTGCATCTATTCATCGAGATCGCATTCT 591
Score = 106 bits (57), Expect = 2e-22
Identities = 65/69 (94%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 599 GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGGTACCAGAACACATGAGTCTTG 658
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 754 GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGATAACAGAACATATGAGTCTTG 813
Query 659 AAATTGCTT 667
|| ||||||
Sbjct 814 AAGTTGCTT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5