BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63830.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332601 jgi|Araly1|332601|fgenesh1_pm.C_scaffold_8001944 1831 0.0
> Ahg332601 jgi|Araly1|332601|fgenesh1_pm.C_scaffold_8001944
Length=1224
Score = 1831 bits (991), Expect = 0.0
Identities = 1148/1224 (94%), Gaps = 9/1224 (1%)
Strand=Plus/Plus
Query 1 ATGCCGGAGAAGACGATTATTTCGTCGGAGAGTTCAAATTCGTCTCCGTTAAACCCTTCT 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4 ATGCCGGAGAAGACGATTATTACGTCGGAGAGTTCAAATTCGTCTCCGTTAAACCCTTCA 63
Query 61 TCTACGCGGATTATCTGCCATGTATGTAATAAGCAGTTCTCGCAGTACACTTGTCCTCGC 120
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 64 TCTTCGCGGATTATCTGCCATGTGTGTAATAAGCAGTTCTCGCAGTACACTTGTCCTCGC 123
Query 121 TGCAACTTCCGGTACTGTTCCCTTCCTTGTTACAAATCTCACAGTGTCCAATGTACTGAA 180
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 124 TGCAACTTCCGGTACTGCTCTCTTCCTTGTTACAAATCTCACAGTGTCCAATGTACTGAA 183
Query 181 TCATTCATGAGAGATAATGTAAACGATGAATTGAAGCAAGTTCGATCTGATGATCAAACG 240
|| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 184 TCTTTCATGAGAGAGAATGTAAATGATGAGTTGAAGCAAGTTCGATCTGATGATCAAACG 243
Query 241 AAAAGGAAGATGCTCGAAATTTTGAAAAGGTTTCACGAAGAAGAAGAGGAAGATGATGGG 300
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 244 AAAACGAAGATGCTCGAAATTTTGAAAAGGTTTCACGAAGAAGAGGAAGAAGATGATGGA 303
Query 301 GGAATTGATAGCATCACGGATGATGAAGGTTTGAGCTTACCGGAGGAGATTATTCAGAAG 360
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 304 GGAATTGATAGCATCACGGATGATGAAGGTTCGATCTTACCGGAGGAGATTATTGAGAAG 363
Query 361 ATAATGAACGGAGATGAAGTGAGTCTTGATGATTTGAGCTTAGAAGAGAGAAAAGGATTC 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 364 ATAATGAACGGAGATGAAGTAAGTCTTGATGATTTGAGCTTAGAAGAGAGAAAAGGGTTC 423
Query 421 CAAAGAGCCTTAGCTTCTGGAGAATTAAGCAAAATGATCCAACCATGGGATCCTTGGTGG 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 424 CAAAGAGCCTTAGCTTCTGGAGAATTAAGCAAAATGATTCAACCATGGGATCCTTGGTGG 483
Query 481 TTACTTGCTTCAGCTCGAACGATCAATCTTGGACTCGGAGGTACACAACTTGTTCAATGC 540
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 484 TTACGTGCTTCAGCTCGAACGATCAATCTTGGACTCGGAGGTACACAACTCGTTCAATGT 543
Query 541 GTTGAAGACGAAGAAG-AG-A-CCACAGTTGTGAGTGAAATCCCACGAGGGCCTGATACA 597
|||||||| ||||||| || | ||| |||||||||||| | ||||||||||||||||||
Sbjct 544 GTTGAAGAAGAAGAAGAAGAAGCCATTGTTGTGAGTGAAGTTCCACGAGGGCCTGATACA 603
Query 598 CCTTTGATCTCACTAAGCAAGCTTACCTCCACGAATCCATCTCCTCTCTTACCAATCCAT 657
||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 604 CCTCTGATCTCACTAAGCAAGCTTAGCTCAACGAATCCATCTCCTCTCTTACCAATCCAT 663
Query 658 TTGATTGACATTGCATATAGTTATTGCTTTACGCTCCGTATCTATAATGGAGAGTGGCAA 717
|||||||| || | |||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 664 TTGATTGATATCGTATATAGCTATTGTTTTACTCTCCGTATCTATAATGGAGAGTGGCAA 723
Query 718 TCTGATTCGCTT-GGTGCAGCAACAATGGTGTTGACTGTTTCATCAGTTTTGGGTCACAA 776
||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 724 TCTAATTCG-TTAGGTGCAGCAACAATGGTGTTAACTGTTTCATCAGTTTTGGGTCAGAA 782
Query 777 TGGACAACCAGAGACCATAAAGGAAGTGTTGTCCTTTTGCTTGGAACAGACATGCTCTTC 836
|| ||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 783 TGCACAACTTGAGACCATTAAGGAAGTGTTGGCGTTTTGCTTGGAACAGACATGCTCTTC 842
Query 837 AGCTTATAAAAACCTTGGTGGTGGTCTGAAGTTCGGATTGAATCTGGTGGATGATGTGAT 896
|||||||| |||||||| || ||| |||||||||||||||||||||| |||||||||||
Sbjct 843 TGCTTATAAGAACCTTGGCGGCGGTTTGAAGTTCGGATTGAATCTGGTCGATGATGTGAT 902
Query 897 TTGTTTTCTTTCTCTTGGCTCTGGAGCTATGGTATGTCTGCTCGGTGATCTCCAAAGGTT 956
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 903 TTGTTTGCTTTCTCTTGGCTCTGGAGCTATGGTATGTCTGCTCTGTGATCTCCAAAGGTT 962
Query 957 GATTCTTGGTGCAATAAAGGAAGTAAAATCATCATCAGGGCGTGATCTGAAGAAGAAACT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GATTCTTGGTGCAATAAAGGAAGTAAAATCATCATCAGGGCGTGATCTGAAGAAGAAACT 1022
Query 1017 AAAGCTTGCAGAGAGGAAAGTGTTCTACATGATGTGTTGGGTCAATGAGCAGAATTCTGA 1076
||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1023 TAAGCTTGCAGAAAGGAAAGTGTTCTTCATGATGTGTTGGGTCAATGAGCAGAGTTCTGA 1082
Query 1077 AGTATGGGAAGCTCTGGAACCATCTGTAAGGGCAGAGAAGAACTCGGTGGTTGAGCTCAA 1136
||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1083 AGTGTGGCAAGCTCTGGAATCATCAGTAAGGGCAGAGAAGAACTCGGTGGTTGAGCTCAA 1142
Query 1137 CGATTACAGAGGGTTTCCAGAA-ATGAAGAAGAA-AGATCAATTTCGAAAAGGTGGTGGC 1194
||||| || ||||||||| ||| |||||||| || ||||||||| | |||||| ||||||
Sbjct 1143 CGATTGCAAAGGGTTTCC-GAATATGAAGAA-AATAGATCAATTCCAAAAAGGCGGTGGC 1200
Query 1195 GTGGTGATTGAGGAGATAGAATGA 1218
||||||||||||||||||||||||
Sbjct 1201 GTGGTGATTGAGGAGATAGAATGA 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5