BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63850.1
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496573 jgi|Araly1|496573|fgenesh2_kg.8__2389__AT5G63850.1 2798 0.0
Ahg487723 jgi|Araly1|487723|fgenesh2_kg.6__857__AT5G09220.1 1286 0.0
> Ahg496573 jgi|Araly1|496573|fgenesh2_kg.8__2389__AT5G63850.1
Length=1806
Score = 2798 bits (1515), Expect = 0.0
Identities = 1716/1809 (95%), Gaps = 29/1809 (2%)
Strand=Plus/Plus
Query 39 ATGTAGCCGAACTTTTTACATATCTGACCTGTATATATATAATAATTATTTATCAAAGAA 98
||||||||| || ||||||||||||||||||||||| | | | ||| |||||||||||||
Sbjct 23 ATGTAGCCG-AC-TTTTACATATCTGACCTGTATATTTCTTA-AATAATTTATCAAAGAA 79
Query 99 ATTAGAGAAAGATT-CT-TCCACTTTTGATGGCTTATAAAAGATGATGACCCAAA-ACAC 155
|||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 80 ATTAGAAAAAGATTCCTCTCCACTTTTGATGGCTTATAAAAGATGATGACCCAAAGACAC 139
Query 156 TCAAAATGCAGCAGCAACTGCTCTCTCACCACCCATCTCCTcatttctcttttgcatttc 215
|||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 140 TCAATATGCAGCAGCAACTGCTCTCTCACCACCCATCTCATTATTTCTCTTTTGCA---- 195
Query 216 tttctttttttctgcattgcattcttttgaggggtttaattttctGCATAGCTTTGTCTA 275
||||| || | || |||| ||||||||||||| |||||| |||||||||
Sbjct 196 --------TTTCT---TT-C-TT-TTTT--GGGGTTTAATTTTGTGCATACCTTTGTCTA 239
Query 276 ATCTCTTAGAGCTCAATAAGAGAAGATGGATGTTCCACGGCCAGCTTTCAAATGTTTTGA 335
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 240 ATTTCTTAGAGCTCAATAAGTGAAGATGGATGTTCCACGGCCAGCTTTCAAATGTTTCGA 299
Query 336 TGACGATGGCCGGCTTAAACGTTCAGGGACGGTTTGGACCGCGAGTGCGCATATCATAAC 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TGACGATGGCCGGCTTAAACGTTCAGGGACGGTTTGGACCGCGAGTGCGCATATTATAAC 359
Query 396 CGCCGTGATTGGATCTGGTGTTCTATCGCTTGCGTGGGCTATAGGTCAACTCGGTTGGAT 455
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 CGCTGTGATTGGTTCTGGTGTTCTATCGCTTGCGTGGGCAATAGGTCAACTCGGTTGGAT 419
Query 456 CGCAGGTCCTACAGTGATGTTGTTGTTCTCTTTTGTCACTTACTACTCTTCCACGCTTCT 515
||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||
Sbjct 420 CGCAGGTCCTACAGTGATGCTCTTGTTCTCTTTTGTCACTTACTACTCTTCGACTCTTCT 479
Query 516 TAGCGACTGCTACAGAACCGGAGATCCTGTCTCTGGGAAGAGAAACTATACTTACATGGA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAGCGACTGCTACAGAACCGGAGATCCTGTCTCTGGGAAGAGAAACTATACTTACATGGA 539
Query 576 CGCTGTCCGATCAATCCTAGGTGGCTTTAGGTTCAAGATTTGTGGGCTGATTCAGTATTT 635
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGCTGTCCGATCAATCCTCGGTGGCTTTAGGTTCAAGATTTGTGGGCTGATTCAGTATTT 599
Query 636 GAATCTGTTTGGTATCACGGTCGGGTACACAATCGCAGCATCTATAAGTATGATGGCGAT 695
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAATCTCTTTGGTATCACGGTCGGGTACACAATCGCAGCATCTATAAGTATGATGGCGAT 659
Query 696 CAAGAGGTCCAACTGTTTCCACGAGAGCGGAGGGAAAAACCCGTGTCACATGTCGAGCAA 755
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAAGAGGTCCAACTGTTTCCATGAGAGCGGAGGGAAAAACCCGTGTCACATGTCGAGCAA 719
Query 756 TCCATACATGATCATGTTTGGTGTGACCGAGATCTTGCTCTCTCAGATCAAAGATTTTGA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCCATACATGATCATGTTTGGTGTGACCGAGATCTTGCTCTCTCAGATCAAAGATTTTGA 779
Query 816 CCAGATTTGGTGGCTCTCCATTGTCGCTGCTATCATGTCCTTCACATACTCTGCAATCGG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCAGATTTGGTGGCTCTCCATTGTCGCTGCTATCATGTCCTTCACATACTCTGCAATCGG 839
Query 876 TTTAGCTCTCGGAATCATTCAAGTCGCGGCAAATGGAGTTGTCAAGGGAAGTCTCACCGG 935
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 840 TTTAGCTCTCGGAATCATTCAAGTCGCTGCCAATGGGGTTGTCAAGGGAAGTCTCACCGG 899
Query 936 AATTAGCATCGGCGCAGTGACTCAGACCCAAAAAATATGGAGAACCTTTCAAGCACTTGG 995
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 900 AATTAGCATCGGGGCAGTGACTCAGACCCAAAAGATATGGAGAACATTTCAAGCACTTGG 959
Query 996 AGACATTGCCTTTGCTTATTCATACTCTGTTGTTCTTATTGAAATTCAGGACACTGTAAG 1055
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 AGACATTGCCTTTGCTTATTCATACTCTGTTGTTCTTATCGAAATTCAGGACACTGTAAA 1019
Query 1056 ATCTCCACCAGCAGAATCAAAAACGATGAAGATCGCCACAAGAATCAGCATCGCTGTTAC 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 ATCTCCACCAGCAGAATCAAAAACGATGAAGATCGCCACAAGAATCAGCATCGCCGTTAC 1079
Query 1116 AACGACATTTTACATGCTATGTGGTTGTATGGGCTATGCCGCCTTCGGAGATAAAGCACC 1175
||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1080 AACGACATTTTACCTGCTATGTGGTTGTATGGGCTATGCCGCCTTTGGAGATGCAGCACC 1139
Query 1176 GGGAAACCTCTTAACCGGTTTTGGTTTCTACAATCCGTTTTGGCTCCTTGACGTGGCTAA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGGAAACCTCTTAACCGGTTTTGGTTTCTACAATCCGTTTTGGCTCCTTGACGTGGCTAA 1199
Query 1236 CGCTGCCATAGTTATCCACCTTGTAGGAGCTTATCAAGTCTTTGCTCAGCCCATCTTCGC 1295
||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 CGCTGCCATTGTTGTCCACCTCGTAGGAGCTTACCAAGTCTTTGCTCAGCCCATCTTCGC 1259
Query 1296 CTTTATTGAGAAACAAGCTGCCGCTAGGTTTCCCGACAGTGACTTGGTGACCAAGGAATA 1355
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1260 CTTTATTGAAAAACAAGCTGCCGCTAGGTTTCCTGACAGTGACTTGGTCACCAAGGAATA 1319
Query 1356 CGAAATCCGAATCCCTGGTTTTAGGTCACCGTACAAAGTCAACGTTTTCAGAGCAGTTTA 1415
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 CGAAATCCGAATCCCTGGTATTAGGTCACCTTACAAAGTCAACGTTTTCAGAGCAGTTTA 1379
Query 1416 CCGAAGCGGGTTTGTGGTTTTGACCACTGTGATATCCATGCTTATGCCGTTTTTCAACGA 1475
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1380 CCGGAGCGGGTTTGTGGTTTTGACCACTGTGATATCGATGCTTATGCCGTTTTTCAACGA 1439
Query 1476 CGTCGTAGGGATTTTAGGTGCGTTAGGGTTTTGGCCTTTGACGGTTTACTTTCCGGTGGA 1535
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1440 CGTCGTGGGGATTTTAGGTGCGTTAGGGTTTTGGCCATTGACGGTTTACTTTCCGGTTGA 1499
Query 1536 GATGTATATAAGACAGAGGAAGGTTGAGAGATGGAGTATGAAGTGGGTTTGTCTGCAGAT 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GATGTATATAAGACAGAGGAAGGTTGAGAGATGGAGTATGAAGTGGGTTTGTCTGCAGAT 1559
Query 1596 GTTGAGCTGTGGTTGTTTGATGATCACGTTGGTCGCCGGAGTTGGCTCCATCGCCGGAGT 1655
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1560 GTTGAGCTGTGGTTGTTTGATGATCACATTGGTTGCCGGAGTTGGCTCCATCGCCGGAGT 1619
Query 1656 AATGCTAGACCTTAAGGTTTACAAGCCGTTCAAGACTACTTACTAAACAAACCATGATGA 1715
|||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1620 AATGCTTGACCTTAAGGTTTACAAGCCGTTCAAGACTACTTACTAAAGAAA--ATCATGA 1677
Query 1716 TGATGAAGAAGAAGAAGGTGGTGGAGaaaaaaaCAAAAGATATAAATTTTAATATATTTC 1775
|||||| ||||||||||||| ||||| |||||||||||| || |||||||||||||||||
Sbjct 1678 TGATGATGAAGAAGAAGGTGTTGGAGGAAAAAACAAAAGGTACAAATTTTAATATATTTC 1737
Query 1776 ATTTGGGGAAATGTGAATAATGTAAAAGTT-CTTCGTTTCGTATAATTTTTATCTTGCGT 1834
|||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||
Sbjct 1738 ATTTGGGGAAATGTGAATAATGTAAAAGTTTCTTCGTTTAGTATAATTATTATCTTTCGT 1797
Query 1835 AATTTATAT 1843
|||||||||
Sbjct 1798 AATTTATAT 1806
> Ahg487723 jgi|Araly1|487723|fgenesh2_kg.6__857__AT5G09220.1
Length=1722
Score = 1286 bits (696), Expect = 0.0
Identities = 1171/1401 (84%), Gaps = 30/1401 (2%)
Strand=Plus/Plus
Query 309 TCCACGGCCAGCTTTCAAATGTTTTGATGACGATGGCCGGCTTAAACGTTCAGGGACGGT 368
||||| |||||||| ||||| || || || |||||||| || ||| | | ||||| ||
Sbjct 207 TCCACAACCAGCTTTTAAATGCTTCGACGATGATGGCCGCCTCAAAAGAACCGGGACCGT 266
Query 369 TTGGACCGCGAGTGCGCATATCATAACCGCCGTGATTGGATCTGGTGTTCTATCGCTT-G 427
|||||||||||| || ||||| ||||| || ||||| ||||| || ||| | || || |
Sbjct 267 TTGGACCGCGAGCGCTCATATAATAACTGCAGTGATCGGATCCGGCGTTTTGTC-ATTGG 325
Query 428 CGTGGGCTATAGGTCAACTCGGTTGGATCGCAGGTCCTACAGTGATGTTGTTGTTCTCTT 487
||||||| || | || ||||| |||||||| || ||| | |||||| | ||||||||||
Sbjct 326 CGTGGGCAATTGCACAGCTCGGATGGATCGCTGGCCCTGCGGTGATGCTATTGTTCTCTT 385
Query 488 TTGTCACT-TACTACTCTTCCACGCTTCTTAGCGACTGCTACAGAACCGGAGATCCTGTC 546
|||| ||| | ||||| ||||| ||||||||||| |||||||||||||| ||| | ||
Sbjct 386 TTGTTACTCT-TTACTCCTCCACACTTCTTAGCGATTGCTACAGAACCGGCGATGCAGTG 444
Query 547 TCTGGGAAGAGAAACTATACTTACATGGACGCTGTCCGATCAATCCTAGGTGGCTTTAGG 606
||||| ||||||||||| ||||||||||| || || |||||||| || ||||| || | |
Sbjct 445 TCTGGCAAGAGAAACTACACTTACATGGATGCCGTTCGATCAATTCTCGGTGGGTTCAAG 504
Query 607 TTCAAGATTTGTGGGCTGATTCAGTATTTGAATCTGTTTGGTATCACGGTCGGGTACACA 666
||||||||||||||||| ||||| || |||||||| ||||||||| || |||| ||||||
Sbjct 505 TTCAAGATTTGTGGGCTAATTCAATACTTGAATCTCTTTGGTATCGCGATCGGATACACA 564
Query 667 ATCGCAGCATCTATAAGTATGATGGCGATCAAGAGGTCCAACTGTTTCCACGAGAGCGGA 726
||||||||||||||||| ||||||||||||||||| || ||||| |||||| |||| |||
Sbjct 565 ATCGCAGCATCTATAAGCATGATGGCGATCAAGAGATCGAACTGCTTCCACAAGAGTGGA 624
Query 727 GGGAAAA-ACCCGTGTCACATGTCGAGCAATCCATACATGATCATGTTTGGTGTGACCGA 785
|| |||| |||| |||||||||||||||||||| ||||||||| ||||||||| | ||
Sbjct 625 GG-AAAAGACCCATGTCACATGTCGAGCAATCCTTACATGATCGCATTTGGTGTGGCAGA 683
Query 786 GATCTTGCTCTCTCAGAT-CAAAGATTTTGACCAGATTTGGTGGCTCTCCATTGTCGCTG 844
|||||||||||||||| | | ||||| || |||||||||||| |||| ||||| || |
Sbjct 684 GATCTTGCTCTCTCAGGTTCCT-GATTTCGATCAGATTTGGTGGATCTCTATTGTTGCAG 742
Query 845 CTATCATGTCCTTCACATACTCTGCAATCGGTTTAGCTCTCGGAATCATTCAAGTCGCGG 904
|| | ||||| ||||| |||||||| || ||| ||||||| |||||| ||||||| || |
Sbjct 743 CTGTAATGTCTTTCACTTACTCTGCCATTGGTCTAGCTCTTGGAATCGTTCAAGTTGCAG 802
Query 905 CAAATGGAGTTGTCAAGGGAAGTCTCACCGGAATTAGCATCGGCGCAGTGACTCAGACCC 964
||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||| || |
Sbjct 803 CAAATGGAGTTTTCAAAGGAAGTCTCACTGGAATAAGCATCGGAACAGTGACTCAAACAC 862
Query 965 AAAAAATATGGAGAACCTTTCAAGCACTTGGAGACATTGCCTTTGCTTATTCATACTCTG 1024
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 863 AAAAAATATGGAGAACCTTCCAAGCACTTGGAGACATTGCCTTTGCTTACTCATACTCTG 922
Query 1025 TTGTTCTTATTGAAATTCAGGACACTGTAAGATCTCCACCAGCAGAATCAAAAACGATGA 1084
|||| || || ||||||||||| ||||||||||| |||||||| ||||| ||||||||||
Sbjct 923 TTGTCCTAATCGAAATTCAGGATACTGTAAGATCCCCACCAGCGGAATCGAAAACGATGA 982
Query 1085 AGATCGCCACAAGAATCAGCATCGCTGTTACAACGAC-AT-TT-TACATGCTATGTGGTT 1141
||| ||||||| ||||||||| ||||| || |||| || || |||||||||||||| |
Sbjct 983 AGAAAGCCACAAAAATCAGCATTGCTGT--CA-CGACTATCTTCTACATGCTATGTGGCT 1039
Query 1142 GTATGGGCTATGCCGCCTTCGGAGATAAAGCACCGGGAAACCTCTTAACCGGTTTTGGTT 1201
||||| |||||||| || |||||| |||||||||||||||| | || |||||||| |
Sbjct 1040 CAATGGGTTATGCCGCTTTTGGAGATGCAGCACCGGGAAACCTCCTCACGGGTTTTGGAT 1099
Query 1202 TCTACAATCCGTTTTGGCTCCTTGACGTGGCTAACGCTGCCATAGTTATCCACCTTGTAG 1261
||||||| |||||||||||||||||| | || ||||| ||||| || ||||||| | |
Sbjct 1100 TCTACAACCCGTTTTGGCTCCTTGACATAGCCAACGCCGCCATTGTCGTCCACCTCATCG 1159
Query 1262 GAGCTTATCAAGTCTTTGCTCAGCCCATCTTCGCCTTTATTGAGAAA-CAAG-CTGCCGC 1319
||||||| |||||||||||||| |||||||||||||||||||| ||| || | | || |
Sbjct 1160 GAGCTTACCAAGTCTTTGCTCAACCCATCTTCGCCTTTATTGAAAAATCA-GTC-GCAGA 1217
Query 1320 TAGGTTTCCCGACAGTGACTTGGTGACCAAGGAATACGAAATCCGAATCCCTGGTTTTAG 1379
|| | ||| |||| |||||| | | |||||||| |||||| |||||| || ||||
Sbjct 1218 GAGATATCCAGACAATGACTTCCTCAGCAAGGAATTTGAAATCAAAATCCCCGGATTTAA 1277
Query 1380 GTCACCGTACAAAGTCAA-CGTTTTCAGAGCAGTTTACCGAAGCGGGTTTGTGGTTTTGA 1438
||| || ||||||| ||| ||||||||| | ||||||||| || || ||||| ||| |
Sbjct 1278 GTCTCCATACAAAG-CAAACGTTTTCAGGGTAGTTTACCGGAGTGGCTTTGTCGTTACAA 1336
Query 1439 CCACTGTGATATCCATGCTTATGCCGTTTTTCAACGACGTCGTAGGGATTTTAGGTGCGT 1498
||||||||||||| ||||| ||||||||||||||||| || || ||||| ||||| ||||
Sbjct 1337 CCACTGTGATATCAATGCTGATGCCGTTTTTCAACGATGTGGTCGGGATCTTAGGGGCGT 1396
Query 1499 TAGGGTTTTGGCCTTTGACGGTTTACTTTCCGGTGGAGATGTATAT-AAGACAGAGGAAG 1557
||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1397 TAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGATGTATATTAAG-CAGAGGAAA 1455
Query 1558 GTTGAGAGATGGAGTATGA-AGTGGGTTTGTCTGCAGATG-TTGAGCTGTGG-TTGT-TT 1613
||| ||| |||||| | || | ||||| ||| | |||||| || || ||| | |||| ||
Sbjct 1456 GTTAAGAAATGGAGCACGAGA-TGGGTGTGTTTACAGATGCTT-AG-TGTTGCTTGTCTT 1512
Query 1614 GATGATCACGTTGGTCGCCGGAGTTGGCTCCATCGCCGGAGTAATGCTAGACCTTAAGGT 1673
| ||||| || |||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct 1513 G-TGATCTCGGTGGTCGCCGGAGTTGGATCAATCGCCGGAGTGATGCTTGATCTTAAGGT 1571
Query 1674 TTACAAGCCGTTCAAGACTAC 1694
|||||||| |||||| ||||
Sbjct 1572 CTACAAGCCATTCAAGTCTAC 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69362336145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5