BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63860.1
Length=2117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496574 jgi|Araly1|496574|fgenesh2_kg.8__2390__AT5G63860.1 2567 0.0
> Ahg496574 jgi|Araly1|496574|fgenesh2_kg.8__2390__AT5G63860.1
Length=1693
Score = 2567 bits (1390), Expect = 0.0
Identities = 1563/1643 (95%), Gaps = 25/1643 (2%)
Strand=Plus/Plus
Query 329 TCTGTCTTTCCTTGTTCAACCCTCGAGAGATTACGGATAGTGAAAGAGAAGCTACAAAAT 388
||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 1 TCTCTCTTTCCTTGTTCAACCCTC--GAGATTACGGATAGTGAAAGAGAAGCTGC-AAAT 57
Query 389 TTCCCAATTTATCAAAAAATAGAAATTTCTTACTTTTTTCAAAATTCATTTCTCCCCaaa 448
||||||||||||||||||||||||||||| || |||||| |||| || |||
Sbjct 58 TTCCCAATTTATCAAAAAATAGAAATTTCATA-TTTTTT-AAAA-AAATATCT-----TG 109
Query 449 aaaaaTATCTTGTGAAAACTGCAACTGTGATCCATGGCGGAGGATATGGCTGCCGACGAA 508
| | | | || ||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 110 TGAGA-A-C---TG-CTACTGCTACTGTGATCCATGGCGGAGGAGATGGCTGCCGATGAA 163
Query 509 GTTACGGCTCCTCCTCGTAAGGTTCTTATCATCTCCGCTGGTGCTAGCCACTCCGTCGCT 568
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GTTACAGCTCCTCCTCGTACGGTTCTTATCATCTCCGCTGGTGCTAGCCACTCCGTCGCT 223
Query 569 CTTCTCTCTGGTGACATTGTTTGTTCTTGGGGTCGAGGAGAGGATGGACAGTTAGGTCAT 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CTTCTCTCTGGTGACATTGTTTGTTCTTGGGGTCGAGGAGAGGATGGACAGTTAGGTCAT 283
Query 629 GGCGATGCAGAGGATCGACCTTCTCCGACTCAGCTTAGCGCTTTAGATGGCCACCAAATT 688
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 284 GGAGATGCAGAGGATCGACCTTCTCCCACGCAGCTTAGCGCGTTAGATGGCCACCAAATT 343
Query 689 GTTTCCGTTACCTGTGGTGCTGATCACACTGTTGCTTATTCACAATCAGGCATGGAAGTC 748
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 344 GTTTCCGTTACCTGTGGTGCTGATCACACTGTTGCTTATTCACAATCTGGCATGGAGGTC 403
Query 749 TACAGTTGGGGATGGGGTGATTTTGGGAGATTAGGCCATGGTAACTCAAGCGACTTGTTT 808
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TACAGTTGGGGATGGGGGGATTTTGGGAGATTAGGCCATGGTAACTCAAGCGACTTGTTT 463
Query 809 ACTCCGCTACCAATCAAAGCATTGCACGGTATTCGGATCAAGCAGATTGCTTGTGGGGAT 868
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 ACTCCCCTACCAATCAAAGCATTGCACGGTATTCGGATCAAGCAGATTGCTTGTGGGGAT 523
Query 869 AGTCATTGTTTGGCTGTCACTATGGAAGGAGAGGTCCAGAGTTGGGGCCGCAACCAGAAT 928
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 524 AGTCATTGTTTAGCTGTCACTATGGAAGGAGAGGTCCAGAGTTGGGGGCGCAACCAGAAT 583
Query 929 GGTCAACTTGGTCTGGGGGACACCGAAGATTCTCTAGTGCCTCAGAAGATTCAAGCCTTT 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GGTCAACTTGGTCTGGGGGACACCGAAGATTCTCTAGTGCCTCAGAAGATTCAAGCCTTT 643
Query 989 GAGGGAATACGAATCAAAATGGTTGCTGCTGGTGCAGAACACACTGCTGCAGTTACAGAA 1048
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 644 GAGGGAATACGAATCAAAATGGTTGCTGCTGGTGCGGAACACACTGCTGCGGTTACAGAA 703
Query 1049 GATGGTGACCTCTATGGATGGGGCTGGGGAAGATACGGAAATTTGGGATTAGGTGACCGG 1108
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GATGGTGACCTATATGGATGGGGCTGGGGAAGATACGGAAATTTGGGATTAGGTGACCGG 763
Query 1109 ACTGACCGCTTAGTTCCTGAAAGAGTTACCTCTACTGGTGGTGAGAAAATGTCAATGGTT 1168
| ||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 764 AATGACCGCTTGGTTCCTGAAAGAGTTACCTCTGCTGGGGGTGAGAAGATGTCAATGGTC 823
Query 1169 GCTTGTGGATGGCGGCACACAATATCAGTTTCCTACTCTGGAGCATTGTATACTTATGGA 1228
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 824 GCTTGTGGATGGCGGCACACAATATCAGTTTCCTACTCTGGAGCATTATATACTTATGGA 883
Query 1229 TGGAGCAAATATGGACAGCTAGGACATGGAGACTTGGAGGATCACCTTATTCCTCACAAA 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TGGAGCAAATATGGACAGCTAGGACATGGAGACTTGGAGGATCACCTTATTCCTCACAAA 943
Query 1289 CTGGAAGCACTGAGCAACAGTTTTATCTCCCAGATTTCGGGAGGTTGGAGACATACAATG 1348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TTGGAAGCACTGAGCAACAGTTTTATCTCCCAGATTTCGGGAGGTTGGAGACATACAATG 1003
Query 1349 GCATTGACTTCAGATGGAAAACTATATGGATGGGGTTGGAATAAGTTTGGACAAGTAGGA 1408
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1004 GCATTGACTTCAGATGGAAAACTATATGGATGGGGTTGGAATAAGTTTGGGCAAGTAGGA 1063
Query 1409 GTCGGCAATAATTTAGATCAGTGTTCTCCTGTGCAAGTGCGATTTCCCGATGATCAGAAA 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GTCGGCAATAATTTAGATCAGTGTTCTCCTGTGCAAGTGCGATTTCCCGATGATCAGAAA 1123
Query 1469 GTAGTTCAAGTCTCATGTGGATGGAGACATACCTTGGCTGTCACTGAAAGAAATAACGTG 1528
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1124 GTAGTTCAAGTCTCATGTGGATGGAGACATACCTTGGCTGTTACTGAAAGAAATAATGTG 1183
Query 1529 TTTGCTTGGGGTAGAGGTACAAATGGACAGCTCGGCATTGGAGAGTCGGTTGACAGGAAC 1588
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1184 TTTGCGTGGGGTAGAGGTACAAATGGACAGCTCGGCATTGGAGAGTCAGTTGACAGGAAC 1243
Query 1589 TTTCCCAAGATTATAGAGGCACTCAGCGTCGATGGAGCAAGTGGACAACATATAGAATCT 1648
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1244 TTTCCCAAGATTATAGAGGCACTGAGCGTCGATGGAGCAAGTGGGCAACATATAGAATCT 1303
Query 1649 TCTAATATCGATCCATCTTCAGGGAAAAGCTGGGTGTCGCCTGCAGAGAGATATGCAGTT 1708
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1304 TCTAATATCGATCCATCTTCAGGGAAAAGCTGGGTGTCCCCTGCAGAGAGATATGCAGTT 1363
Query 1709 GTTCCTGATGAAACGGGCCTAACGGATGGTTCAAGCAAAGGTAATGGAGGTGATATCAGT 1768
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1364 GTTCCTGATGAAACGGGCCTAACCGATGGTTCAAACAAAGGTAATGGAGGTGATATCAGT 1423
Query 1769 GTTCCACAAACTGATGTCAAGCGTGTACGAATTTGAGCCTGAGTCAATTCCGtttttttt 1828
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 1424 GTTCCACAAACTGATGTCAAGCGTGTACGAATTTGAGCTTGAGACACTTCCGTTTTTTTT 1483
Query 1829 ttACTTCCGGTTCTTCCGTTGGATT-----CGAAGGTTTTTCAGTGATCTCTTTTGGGTT 1883
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1484 ---CTTCCGGTTCTTCCGTTGGATTGGATTCGAAGGTGTTTCAGTGATCTCTTTTGGGTT 1540
Query 1884 GAGGTTTGTACTAAGAGTACGTCTGTCTAGTTTGGGATTGTACTTTTTGTTGTTGTTGTT 1943
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1541 GAGGTTTGTAGTAAGAGTACGTCTGTCTAGTTTGGGATTGTATTTTTTGTTGTTGTTGTT 1600
Query 1944 AGTTTGTAACTTGTGATGCTTCC 1966
|||||||||||||||||||||||
Sbjct 1601 AGTTTGTAACTTGTGATGCTTCC 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79646702295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5