BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63870.2
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497516 jgi|Araly1|497516|fgenesh2_kg.697__2__AT5G63870.2 2032 0.0
Ahg496576 jgi|Araly1|496576|fgenesh2_kg.8__2392__AT5G63870.2 2028 0.0
> Ahg497516 jgi|Araly1|497516|fgenesh2_kg.697__2__AT5G63870.2
Length=1436
Score = 2032 bits (1100), Expect = 0.0
Identities = 1337/1446 (92%), Gaps = 38/1446 (3%)
Strand=Plus/Plus
Query 62 GCTAGGTCCAAGATCCAAGCTTTGGAATTTTG---TA-AATTGT--CTCCACTCTTAGCC 115
||||||||||||||| ||||||||| |||||| || | || | || || | |||
Sbjct 1 GCTAGGTCCAAGATCGAAGCTTTGG-ATTTTGTTTTACAGTTTTAGCTTCA-T-TTA--- 54
Query 116 GTTTTAATGGAAACTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGCTCTCACT 175
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 55 GTTCCAATGGAATCTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGGTCTCACC 114
Query 176 AACGACTGGGTACATGGGCTTATGTCGTGTTTCGAATGGTCTTCATGGAATCTACCTCCT 235
||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 115 AACGAGTGGGTACATGGGCTTATGTCTTCTTTCCAATGGTCTTCATGGAATCTACCTCCT 174
Query 236 TCCCAGTTACCTTCACTATTGCCTGTCAACGTCTTTGATTCCCTCGTCCTCACCGC-TCA 294
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 175 TCCCAGTTACCTTCACTTTTGCCAGTCAGCGTCTTTGATTCCCTCGTCCTCACCGCTTC- 233
Query 295 TAAAATCCTCCACAAAGAACGTAACTGCGTTCATATCGATGATCTTGACTCTGTA-TCCA 353
||||||||||||||||| || ||||||||||||||||||| ||||| |||| | ||||
Sbjct 234 CAAAATCCTCCACAAAGAGCGCAACTGCGTTCATATCGATGGCCTTGATTCTG-AGTCCA 292
Query 354 ACGTTGTTGTGGTTGGTGACATTCATGGTCAGCTTCATGACCTTCTTTTCCTATTGAAAG 413
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 293 ACGTTGTTGTGGTTGGTGACATTCATGGTCAGCTCCATGACCTTCTCTTCCTATTGAAAG 352
Query 414 ATACTGGCTTTCCTTGTCAAAACCGGTGTTATGTTTTCAACGGAGACTATGTGGATCGCG 473
||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
Sbjct 353 ATACTGGCTTTCCTTGTCAAAACCGGTTTTATGTATTCAACGGCGACTATGTGGATCGTG 412
Query 474 GTGCTTGGGGACTTGAAACCTTCCTTGTTCTCTTGTCCTGGAAGGTTTTGATGCCGGACA 533
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 413 GTGCTTGGGGACTCGAGACCTTCCTTGTTCTCTTGTCCTGGAAGGTTCTGATGCCGGACA 472
Query 534 GAGTCTACCTACTCCGTGGTAATCATGAGTCAAAGTATTGTACATCTATGTATGGTTTCG 593
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 473 GAGTCTACCTACTCCGTGGTAATCATGAATCAAAGTATTGTACATCTATGTATGGTTTTG 532
Query 594 AGAAGGAAGTGCTTACAAAATACGGAGACAAGGGAAAACATGTGTACCGGAAATGTTTGG 653
| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 533 AAAAGGAGGTGCTCACAAAATACGGAGACAAGGGAAAACATGTTTACCGCAAATGCTTGG 592
Query 654 GTTGCTTTGAAGGTCTTCCTTTGGCTTCCATAATTTCTGGACGTGTTTATACAGCACATG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTTGCTTTGAAGGTCTTCCTTTGGCTTCCATAATTTCTGGACGTGTTTATACAGCACATG 652
Query 714 GAGGGCTTTTCCGCAGCCCAGTCTTGCCTAAGCGAACAACAAGGGGGAAAAAGAACCGTC 773
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 653 GAGGGCTTTTCCGCAGCCCAGTCTTGCCTAAGAGAACAACAAGGGGGAAAAAGAACCGTC 712
Query 774 GGGTAGTTCTTCTGGAACCTGAGCCGAGCTCAATGAAACTCGGTACCTTAGATGAGTTGA 833
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 713 GGGTAGTTCTTCTGGAACCTGAGCCGAGCTCGTTGAAACTTGGTACCTTAGATGAGTTGA 772
Query 834 TGCAAGCTCGAAGATCAGTTCTTGATCCTCCTTGGGAAGGTTCAAACTTGATACCAGGAG 893
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 773 TGCAAGCTCGAAGATCAGTTCTTGATCCTCCTTGGGAAGGTTCAAACTTGATTCCCGGGG 832
Query 894 ACGTTTTATGGTCTGATCCTTCAATGACTCCGGGCCTTTCACCAAATGAACAGAGAGGCA 953
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 833 ACGTTTTATGGTCTGATCCTTCAATGACTTCGGGCCTTTCACCAAATGAACAGAGAGGCA 892
Query 954 TTGGTCTTCTTTGGGGTCCCGATTGTACAGAGGATTTTTTGAAGAAATATGAACTGAAGT 1013
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 893 TTGGTCTTCTCTGGGGTCCCGATTGTACAGAGGATTTTTTGAAGAAATATGAACTAAAGT 952
Query 1014 TGATCATCAGATCACATGAAGGTCCAGATGCTAGAGAGAAGAGAACTGGTCTTGGTGGAA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 953 TGATCATCAGATCACATGAAGGTCCAGATGCTAGAGAGAAGAGAACTGGTCTTGGTGGGA 1012
Query 1074 TGGACAATGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCA 1133
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGACAAAGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCA 1072
Query 1134 GTGCACCTGACTATCCGCAATTCCAAGCAACAGAAGAGAGGTACAAAAACAAAGGAGCAT 1193
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GTGCACCAGACTATCCACAATTCCAAGCAACAGAAGAGAGGTACAAAAACAAAGGAGCAT 1132
Query 1194 ATATTATTTTGCAGGCGCCTGATTTCTCGGATCCTCAATTTCATAGTTTCGAAGCTGTTA 1253
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1133 ATATTATTTTGCAGGCGCCTGATTTCTCCGATCCTCAATTTCATAGTTTCGAGGCTGTTA 1192
Query 1254 AACCGCGACCAAAGGCGCATCCATATTATGACTTTGAAAATGTCATTGATTCTGATGATG 1313
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1193 AACCGCGACCAAAGGCGCATCCGTATTATGACTTTGAAAATGTGATTGATTCTGATGATG 1252
Query 1314 AGATGGATAAGTCAGCAATGGACACCAATAACGAACAACCAAATAGCTGACCGAAGCTGA 1373
||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1253 AGATGGATAAGTCGGCACTGGACACCAATGACGAACAACCAAATCGCTGACCGAAGCTGA 1312
Query 1374 AAAGGAGTATCTTGAATTGATGTTTTTTACAGTTGTTGTGATTGCTCA-TTATTTGCAAA 1432
|||||||| | || | | ||| || || | || || | |||||| ||||
Sbjct 1313 AAAGGAGTTT-TT-AC---A-GTT-----CA-TT-TAAA-AT--CT-AGTTATTTACAAA 1355
Query 1433 CAT-AAAATGGAATCAAATGTAAAGAAAAGAG-ATGAAGAAAATCATTTGTAGAATTCAC 1490
|| |||||| || ||||||||||||||| || |||||||||| ||||||||||||| ||
Sbjct 1356 -ATGAAAATGAAACCAAATGTAAAGAAAA-AGGATGAAGAAAACCATTTGTAGAATTAAC 1413
Query 1491 ATTTAA 1496
||||||
Sbjct 1414 ATTTAA 1419
> Ahg496576 jgi|Araly1|496576|fgenesh2_kg.8__2392__AT5G63870.2
Length=1424
Score = 2028 bits (1098), Expect = 0.0
Identities = 1254/1328 (94%), Gaps = 16/1328 (1%)
Strand=Plus/Plus
Query 62 GCTAGGTCCAAGATCCAAGCTTTGGAATTTTG---TA-AATTGT--CTCCACTCTTAGCC 115
||||||||||||||| ||||||||| |||||| || | || | || || | |||
Sbjct 1 GCTAGGTCCAAGATCGAAGCTTTGG-ATTTTGTTTTACAGTTTTAGCTTCA-T-TTA--- 54
Query 116 GTTTTAATGGAAACTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGCTCTCACT 175
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 55 GTTCCAATGGAATCTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGGTCTCACC 114
Query 176 AACGACTGGGTACATGGGCTTATGTCGTGTTTCGAATGGTCTTCATGGAATCTACCTCCT 235
||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 115 AACGAGTGGGTACATGGGCTTATGTCGTCTTTCCAATGGTCTTCATGGAATCTACCTCCT 174
Query 236 TCCCAGTTACCTTCACTATTGCCTGTCAACGTCTTTGATTCCCTCGTCCTCACCGC-TCA 294
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 175 TCCCAGTTACCTTCACTTTTGCCAGTCAGCGTCTTTGATTCCCTCGTCCTCACCGCTTC- 233
Query 295 TAAAATCCTCCACAAAGAACGTAACTGCGTTCATATCGATGATCTTGACTCTGTA-TCCA 353
||||||||||||||||| || ||||||||||||||||||| ||||| |||| | ||||
Sbjct 234 CAAAATCCTCCACAAAGAGCGCAACTGCGTTCATATCGATGGCCTTGATTCTG-AGTCCA 292
Query 354 ACGTTGTTGTGGTTGGTGACATTCATGGTCAGCTTCATGACCTTCTTTTCCTATTGAAAG 413
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 293 ACGTTGTTGTGGTTGGTGACATTCATGGTCAGCTCCATGACCTTCTCTTCCTATTGAAAG 352
Query 414 ATACTGGCTTTCCTTGTCAAAACCGGTGTTATGTTTTCAACGGAGACTATGTGGATCGCG 473
||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
Sbjct 353 ATACTGGCTTTCCTTGTCAAAACCGGTTTTATGTATTCAACGGCGACTATGTGGATCGTG 412
Query 474 GTGCTTGGGGACTTGAAACCTTCCTTGTTCTCTTGTCCTGGAAGGTTTTGATGCCGGACA 533
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 413 GTGCTTGGGGACTCGAGACCTTCCTTGTTCTCTTGTCCTGGAAGGTTCTGATGCCGGACA 472
Query 534 GAGTCTACCTACTCCGTGGTAATCATGAGTCAAAGTATTGTACATCTATGTATGGTTTCG 593
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 473 GAGTCTACCTACTCCGTGGTAATCATGAATCAAAGTATTGTACATCTATGTATGGTTTTG 532
Query 594 AGAAGGAAGTGCTTACAAAATACGGAGACAAGGGAAAACATGTGTACCGGAAATGTTTGG 653
| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 533 AAAAGGAGGTGCTCACAAAATACGGAGACAAGGGAAAACATGTTTACCGCAAATGCTTGG 592
Query 654 GTTGCTTTGAAGGTCTTCCTTTGGCTTCCATAATTTCTGGACGTGTTTATACAGCACATG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTTGCTTTGAAGGTCTTCCTTTGGCTTCCATAATTTCTGGACGTGTTTATACAGCACATG 652
Query 714 GAGGGCTTTTCCGCAGCCCAGTCTTGCCTAAGCGAACAACAAGGGGGAAAAAGAACCGTC 773
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 653 GAGGGCTTTTCCGCAGCCCAGTCTTGCCTAAGAGAACAACAAGGGGGAAAAAGAACCGTC 712
Query 774 GGGTAGTTCTTCTGGAACCTGAGCCGAGCTCAATGAAACTCGGTACCTTAGATGAGTTGA 833
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 713 GGGTAGTTCTTCTGGAACCTGAGCCGAGCTCGTTGAAACTCGGTACCTTAGATGAGTTGA 772
Query 834 TGCAAGCTCGAAGATCAGTTCTTGATCCTCCTTGGGAAGGTTCAAACTTGATACCAGGAG 893
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 773 TGCAAGCTCGAAGATCAGTTCTTGATCCTCCTTGGGAAGGTTCAAACTTGATTCCCGGGG 832
Query 894 ACGTTTTATGGTCTGATCCTTCAATGACTCCGGGCCTTTCACCAAATGAACAGAGAGGCA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ACGTTTTATGGTCTGATCCTTCAATGACTCCGGGCCTTTCACCAAATGAACAGAGAGGCA 892
Query 954 TTGGTCTTCTTTGGGGTCCCGATTGTACAGAGGATTTTTTGAAGAAATATGAACTGAAGT 1013
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 893 TTGGTCTTCTCTGGGGTCCCGATTGTACAGAGGATTTTTTGAAGAAATATGAACTAAAGT 952
Query 1014 TGATCATCAGATCACATGAAGGTCCAGATGCTAGAGAGAAGAGAACTGGTCTTGGTGGAA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 953 TGATCATCAGATCACATGAAGGTCCAGATGCTAGAGAGAAGAGAACTGGTCTTGGTGGGA 1012
Query 1074 TGGACAATGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCA 1133
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGACAAAGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCA 1072
Query 1134 GTGCACCTGACTATCCGCAATTCCAAGCAACAGAAGAGAGGTACAAAAACAAAGGAGCAT 1193
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GTGCACCAGACTATCCACAATTCCAAGCAACAGAAGAGAGGTACAAAAACAAAGGAGCAT 1132
Query 1194 ATATTATTTTGCAGGCGCCTGATTTCTCGGATCCTCAATTTCATAGTTTCGAAGCTGTTA 1253
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1133 ATATTATTTTGCAGGCGCCTGATTTCTCCGATCCTCAATTTCATAGTTTCGAGGCTGTTA 1192
Query 1254 AACCGCGACCAAAGGCGCATCCATATTATGACTTTGAAAATGTCATTGATTCTGATGATG 1313
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1193 AACCGCGACCAAAGGCGCATCCGTATTATGACTTTGAAAATGTGATTGATTCTGATGATG 1252
Query 1314 AGATGGATAAGTCAGCAATGGACACCAATAACGAACAACCAAATAGCTGACCGAAGCTGA 1373
||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1253 AGATGGATAAGTCGGCACTGGACACCAATGACGAACAACCAAATCGCTGACCGAAGCTGA 1312
Query 1374 AAAGGAGT 1381
||||||||
Sbjct 1313 AAAGGAGT 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5