BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63880.2
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496578 jgi|Araly1|496578|fgenesh2_kg.8__2394__AT5G63880.1 708 0.0
Ahg325480 jgi|Araly1|325480|fgenesh1_pm.C_scaffold_6000700 516 1e-145
Ahg887426 jgi|Araly1|887426|Al_scaffold_0697_1 422 3e-117
Ahg921570 jgi|Araly1|921570|scaffold_102851.1 364 6e-100
> Ahg496578 jgi|Araly1|496578|fgenesh2_kg.8__2394__AT5G63880.1
Length=859
Score = 708 bits (383), Expect = 0.0
Identities = 412/426 (97%), Gaps = 1/426 (0%)
Strand=Plus/Plus
Query 149 TCGATAAGTGAAGAAAAGATGGGGAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTT 208
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 52 TCG-TAAGTGAAGAAAAGATGGGAAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTT 110
Query 209 GATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGAAG 268
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 111 GATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAG 170
Query 269 CTTGAGAAAGTAATTGAAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGA 328
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 171 CTTGAGAAAGTAATTGAAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGA 230
Query 329 AAGGACAGAGCTTTGTTAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAA 388
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 231 AAGGACAGAGCTTTGTTAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAA 290
Query 389 GTGGATCAATGGGTCATCAATGTTGAACAACAATTAACAGATATTGAACTTACGAGCAAA 448
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 291 GTTGATCAGTGGGTCATCAATGTTGAACAACAATTAGCAGATATTGAACTTACGAGCAAA 350
Query 449 CAAAAGGCAGTGTTTGAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGC 508
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CAAAAGGCTGTGTTTGAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGC 410
Query 509 GAATTGGACCTTGATGATGTTCAAAAACTAATGGATGATACTGCTGATGCTAAAGCTTAT 568
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 411 GAGTTGGACCTTGATGATGTTCAAAAACTTATGGATGATACTGCTGATGCTAAAGCTTAT 470
Query 569 CAAGAT 574
||||||
Sbjct 471 CAAGAT 476
Score = 494 bits (267), Expect = 7e-139
Identities = 358/398 (90%), Gaps = 22/398 (6%)
Strand=Plus/Plus
Query 647 GAGCTGAACGCTATAT-TGGGAGAGAAACTATCAGCAGAGGATGAGGAAGATATATTAGC 705
|||||||| ||||| | |||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 477 GAGCTGAATGCTAT-TCTGGGAGAGAAGCTATCAGCAGAGGATGAAGAAGATGTATTAGC 535
Query 706 AGAATTTGACAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTGAAGTGCCTACAAA 765
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 536 AGAATTTGACAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTCAAGTGCCTACGAA 595
Query 766 GGAGTCTGAAGAATCTGAGAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGC 825
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGAGTCCGAAGAATCTGACAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGC 655
Query 826 TTCCAATGCGGAAATCACACCAGCTGAGTCCGCCACAAAAACAAAAGTTCTCGAAGAACC 885
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 TTCCAATGCAGAAATCACACCAGCTGAATCCGCCACAAAAACAAAAGTTCTCGAAGAACC 715
Query 886 TTTGCCGGCTTGAGCTAGAAGAAACTGATCAGCAATACGATTTTATCATTCTTTTACCAG 945
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||
Sbjct 716 TTTGCCGGCTTGAGCTAGAAGAAACTGATCAACAAGACGATTTCATCATTCTTTTAGCAC 775
Query 946 TTTTTT----CTTTG--GTGCTCTCTGAAGTTTTCTGTATAATCTTTGAAGTCGCTGTCA 999
|||||| |||| ||||||| ||||||||||||| ||| | | | ||
Sbjct 776 TTTTTTTTTTCTTTATTGTGCTCTTTGAAGTTTTCTGTGTAA------A---C-C-GT-- 822
Query 1000 TTTGTAAAGAACAAGATATATTTGGAATCCCATTGTGT 1037
|| |||||||||||||||||||||||||||||||||||
Sbjct 823 TT-GTAAAGAACAAGATATATTTGGAATCCCATTGTGT 859
> Ahg325480 jgi|Araly1|325480|fgenesh1_pm.C_scaffold_6000700
Length=654
Score = 516 bits (279), Expect = 1e-145
Identities = 368/411 (90%), Gaps = 6/411 (1%)
Strand=Plus/Plus
Query 167 ATGGGGAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCTC 225
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1 ATGGGGAATTTGTTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTTTC 59
Query 226 TCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGA-AGCTTGAGAAAGTAATTG 284
||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 60 TCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCA-ACAGCTTGAGAAAGTAATTG 118
Query 285 AAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGAAAGGACAGAGCTTTGT 344
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 119 AAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGT 178
Query 345 TAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAAGTGGATCAATGGGTCA 404
||||||||| |||||| || || ||||||||||| ||||||||||| ||||| ||| |||
Sbjct 179 TAGCATTGAAGAAGAAGCGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCA 238
Query 405 TCAATGTTGAACAACAATTAACAGATATTGAACTTACGAGCAAACA-AAAGGCAGTGTTT 463
||||||| ||||||||||| ||||||| |||||||| ||||| || |||| |||| |||
Sbjct 239 TCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAGAAAG-CAGTCTTT 297
Query 464 GAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGCGAATTGGACCTTGAT 523
|||||||||||||| |||| ||||| |||||||| ||||| || || | ||||||||
Sbjct 298 GAGAGCTTAAAGCAAGGTAGCAGTGCAATTAAGGCGATTCAGAGTGAGGTCAACCTTGAT 357
Query 524 GATGTTCAAAAACTAATGGATGATACTGCTGATGCTAAAGCTTATCAAGAT 574
||||||||||||||||||||||| |||||||| || || ||||| || |||
Sbjct 358 GATGTTCAAAAACTAATGGATGACACTGCTGAGGCCAAGGCTTACCAGGAT 408
> Ahg887426 jgi|Araly1|887426|Al_scaffold_0697_1
Length=255
Score = 422 bits (228), Expect = 3e-117
Identities = 246/255 (96%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 167 ATGGGGAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTTGATCGAGCGATTCTCTCT 226
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTTGATCGAGCGATTCTCTCT 60
Query 227 CTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGAAGCTTGAGAAAGTAATTGAA 286
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 61 CTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGAA 120
Query 287 GCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGAAAGGACAGAGCTTTGTTA 346
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 121 GCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGTTA 180
Query 347 GCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAAGTGGATCAATGGGTCATC 406
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 GCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCATC 240
Query 407 AATGTTGAACAACAA 421
|||||||||||||||
Sbjct 241 AATGTTGAACAACAA 255
> Ahg921570 jgi|Araly1|921570|scaffold_102851.1
Length=313
Score = 364 bits (197), Expect = 6e-100
Identities = 225/238 (95%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 149 TCGAT-AAGTGAAGAAAAGATGGGGAATTTGTTCGTGAAGAAACCACAGATCACGGAGGT 207
||||| |||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 2 TCGATAAAGTGAAGAAAATATGGGAAATTTGTTCCTGAAGAAACCTCAGATCACGGAGGT 61
Query 208 TGATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGAA 267
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 62 TGATCGAGTGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAAAA 121
Query 268 GCTTGAGAAAGTAATTGAAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCG 327
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 122 GCTTGAGAAAGTAATTGAAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCG 181
Query 328 AAAGGACAGAGCTTT-GTTAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAA 384
|||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 182 AAAGGACAGA-CTTTTGTTAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAA 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5