BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63900.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496581 jgi|Araly1|496581|fgenesh2_kg.8__2397__AT5G63900.1 2355 0.0
> Ahg496581 jgi|Araly1|496581|fgenesh2_kg.8__2397__AT5G63900.1
Length=1668
Score = 2355 bits (1275), Expect = 0.0
Identities = 1548/1678 (92%), Gaps = 26/1678 (2%)
Strand=Plus/Plus
Query 7 TCGTGTGATATTGTTCCGATGGAAGCAGAGCTAAGTCCAGGAGCCATCGAAGAGTGGCTT 66
|||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 7 TCGTGTAATATTGTTCAGATGGAAGCGGAGCTAAGTCCAGGAGCCATCGAACAGTGGATT 66
Query 67 TCGACGGTAAAGCATGGAAAGATGA-CGGAGAACGGAAAACGACGATCGGATTTGTCCAT 125
|||||||||||| |||||||||||| | ||||| ||||||||||||||||||||| | ||
Sbjct 67 TCGACGGTAAAGAATGGAAAGATGATC-GAGAAAGGAAAACGACGATCGGATTTGGCGAT 125
Query 126 CAAGGTGAAGAGACATCTCTCGGCTCTTGGTTGGGTAATCTCTTACTATAACAAAAGGAA 185
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 126 CAAGGTGAGGAGACATCTCTCGGCTCTTGGTTGGGTAATCTCTTACTTTAACAAAGGGAA 185
Query 186 CAAGAAAGAGCAGCGTTATAAGTCTCCCAAGGGAAAGTGGTTCTACTCTTTAGCTAAGGC 245
|||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 186 CAAGCGAGAGCTGCGTTATAAGTCTCCCAAGGGAAGGTGGTTTTACTCTTTAGCTAAGGC 245
Query 246 TTGTATGAGTTGTGTCGACCAAGACTCTCAACAGCAACTACAAATTGTTCCCAAATATGA 305
||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 246 TTGTATGAGTTGTGTCGACCAAGACTCTCAACAACAACAACAAATTGTTCCTAAATATGA 305
Query 306 CTTGTCTTGCCT-TCCAAGCAATAT-TG-CCTCAGAGTCTAGTTCTGATGTTTCGAATCA 362
||||||||| || |||||| || || || |||| || ||||||| || || ||||||||
Sbjct 306 CTTGTCTTG-CTCTCCAAG-AA-ATCTGTCCTCGGAATCTAGTTTTGTTGGATCGAATCA 362
Query 363 AAAACAGAAGAAAAGTAAGAAAAGGGGTAGGGTCGAGGATTTGGATGTCAAAAGCACAGC 422
|||||||||||| |||||||||||| ||||||| |||||||||||| |||| ||||||||
Sbjct 363 AAAACAGAAGAAGAGTAAGAAAAGGAGTAGGGTTGAGGATTTGGATATCAATAGCACAGC 422
Query 423 TCCGGAAAAAGATAATCATCCGTCTGCTGATTTGATCAAAATCGTTCCAAATTTTGATGT 482
|||||||||||| | |||| | || ||||||| ||||||||||||||||||||||||||
Sbjct 423 TCCGGAAAAAGAGAGTCAT--GCCT-CTGATTTTATCAAAATCGTTCCAAATTTTGATGT 479
Query 483 AGCAAAACAACAACAACAGAAGAAGATAATAATGAATAGA---GAGGGTTCTGATACGGC 539
| |||||||||| | | ||||| | || |||||||| |||| || |||||||||
Sbjct 480 ATTGAAACAACAAC-A-TG-AGAAGCT-AT--TGAATAGAGTGGAGGATTGTGATACGGC 533
Query 540 TGTGTTTAATGGGGACCAAGAGAAGATCAGAATCGGTCTCAATGTTGATGTAATACATGA 599
|| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct 534 TGCGTTTAATGGGGACCAAGAGAAGATCAAAATCATTCTCAACGTTGATGTAATACATGA 593
Query 600 GCAACAGAAGAAGAGAAGGAAGATGGCGAGTGAAGAGATAAGGAGGCCGAAG-ATGGTGA 658
|||||| |||||||||||||||| |||| ||||||||||||||||||| ||| || | ||
Sbjct 594 GCAACAAAAGAAGAGAAGGAAGACGGCGGGTGAAGAGATAAGGAGGCC-AAGAATAGAGA 652
Query 659 AATCTCTGAAGAAGGTATTACAAGTGATGGAAAAGAAGCAGCAGAAGAACAAGCATGAAA 718
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AATCGCTGAAGAAGGTCTTACAAGTGATGGAAAAGAAGCAGCAGAAGAACAAGCATGAAA 712
Query 719 AAGAGTCTCTAAGATTCTGTAGAAAAGATTGTAGTCCGGACATGAACTGTGATGTGTGTT 778
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 713 AAGAGTCTCTAAGATTCTGTAGAAAAGATTCTAGTCCGGACATGAACTGTGATGTGTGCT 772
Query 779 GTGTTTGTCACTGGGGTGGAGATTTGCTTCTTTGTGATGGTTGTCCTTCAGCGTTTCACC 838
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 773 GTGTTTGTCACTGGGGTGGAGATTTGCTTCTATGTGATGGTTGTCCTTCAGCTTTTCACC 832
Query 839 ATGCTTGCCTCGGTTTGTCTAGTCTTCCCGAGGAAGACCTCTGGTTCTGTCCTTGTTGCT 898
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 833 ATACTTGCCTCGGTTTGTCGAGTCTTCCCGAGGAAGATCTCTGGTTCTGTCCTTGTTGCT 892
Query 899 GCTGCGATATCTGTGGATCAATGGAATCACCCGCGAACAGCAAGTTGATGGCTTGTGAGC 958
|||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 893 GCTGTGATATATGTGGATCAATGGAATCACCCGTAAACAGCAAGTTGATGGCATGTGAGC 952
Query 959 AGTGCCAGAGAAGGTTCCATCTCACGTGTTTGAAAGAAGA-CTCTTGCATTGTTTCGAGT 1017
||||||| ||||| |||||||||| ||||||||||||||| | || | || ||||| ||
Sbjct 953 AGTGCCAAAGAAGATTCCATCTCAAGTGTTTGAAAGAAGAGC-CTGGTATCGTTTCCTGT 1011
Query 1018 AGAGGCTGGTTCTGTAGTAGTCAATGCAACAGAGTCTTTTCCGCGCTTGAGAATCTCCTA 1077
||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||
Sbjct 1012 AGAGGCTGGTTCTGTAGTAGTCAATGCAATAGAGTCTCTTCCGCCCTTGAGAATCTCATA 1071
Query 1078 GGAAGTAAAATTGCAGTAGGCAACGACGGTGATTTGGTCTGGACATTGATGAGAGCTCCG 1137
||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1072 GGATGTAAGATTGCAGTAGGCAACAACGGTGATTTGGTCTGGACGTTGATGAGAGCTCCG 1131
Query 1138 AACGAAGGTGAACACTATGATGATGAACAAATCTCCAAGCTAGAATCTGCTGTCGAGATA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1132 AACGAAGGTGAACACTATGATGATGAACAAATCTCCAAGCTAGAATCTGCTGTTGAGATA 1191
Query 1198 CTTCACCAAGGGTTTGAGCCTACCAATGATGTTTTCTCTGGGAGAGACCTTGTTGAGGAA 1257
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1192 TTTCACCAAGGGTTTGAGCCTACCAAAGATGTTTTCTCTGGGAGAGACCTTGTTGAGGAA 1251
Query 1258 CTGATATACAGGAAAGACAGAACTGGAGTGGGCCGCGGGTTTTACACAGTCTTGATCGAG 1317
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1252 CTGATATTCAGGAAAGACAGAACTGGAGTGGGCCGCGGATTTTACACAGTCTTGATCGAG 1311
Query 1318 AGAAAGAACGAGCCTATCACGGTGGCAGCAGTGAGAGTTGACAAAGATGTAGTCGAGATC 1377
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1312 AGAAAGAAGGAGCCTATTACGGTGGCTGCAGTGAGAGTTGACAAAGATGTAGTCGAGATC 1371
Query 1378 CCTTTGGTGGCGACATTGTCTAGTTACAGAAGAAGTGGGATGTGCAGAGTGCTGATGGAT 1437
|||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 1372 CCTTTGGTGGCGACATTGTCTAACTACAGGAGAAGTGGGATGTGCAGAGTGTTGATGGAT 1431
Query 1438 GAGTTGGAGAAGCAAATGTCTCAGATGGGAGTTTGTAGACTGGTCTTACCGGCTGCAAAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAGTTGGAGAAGCAAATGTCTCAGATGGGAGTTTGTAGACTGGTCTTACCGGCTGCAAAA 1491
Query 1498 GAGGTTGTGACCACTTGGACTGAGCGGTTTGGGTTCTCTGTAATG-AACAGTTCGGAGCG 1556
|||||||||| ||||||||| |||||||||||||||| |||||| || ||||| |||||
Sbjct 1492 GAGGTTGTGAGCACTTGGACACAGCGGTTTGGGTTCTCGGTAATGGAA-AGTTCCGAGCG 1550
Query 1557 GCTGGAGCTTGTGAAACATGGAATGCTTGATTTTGTTGGTACCATCATGTGCCATAAGTT 1616
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1551 GCTGGAGCTTGTGAAACATGGAATGCTTGATTTTGTAGGTACCGTCATGTGCCATAAGTT 1610
Query 1617 TCTTCAGAAGGAAAGAGCAGAAAATGATTCTGCAGAAGAGTCAAGTCTCACAGAATAA 1674
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1611 TCTTGTGAAGGAAAGAGCAGAAAATGATTCTGCAGAAGAGTCAAGCCTCACAGAATAA 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5