BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63905.1
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951204 jgi|Araly1|951204|scaffold_803091.1 444 3e-124
> Ahg951204 jgi|Araly1|951204|scaffold_803091.1
Length=273
Score = 444 bits (240), Expect = 3e-124
Identities = 252/258 (98%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 64 TCAAATCAATCTGATCGTAGATGGGTTGTTTCAGTTGCTTCGACGGAACCCAAAAGGAAC 123
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAAATCAATCCGATCGGAGATGGGTTGTTTCAGTTGCTTCGACGGAACCCAAAAGGAAC 60
Query 124 AGCGTAAGGAAGAAGAGAGACAAGCCTCCGCCGAAGCTCGTGCCAAAGCCGCCGAAGCTG 183
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 61 AGCGTAAGGAAGAAGAGAGACAAGCCTCCGCCGAAGCTCGCGCCAGAGCCGCCGAAGCTG 120
Query 184 CCCAGCGACGGAAAGAGCAGTTTGATAAGTCTGCAGCTGGAAGAGCTGCACAAGCTCAAT 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAGCGACGGAAAGAGCAGTTTGATAAGTCTGCAGCTGGAAGAGCTGCACAAGCTCAAT 180
Query 244 TACAACAAATGGCTAAACAATCTGCAAATACTAACAAAGGAGAGCCTGTTCTTAAGTGGC 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACAGCAAATGGCTAAACAATCTGCAAATACTAACAAAGGAGAGCCTGTTCTTAAGTGGC 240
Query 304 AAATGACGTAGTGATGAG 321
| ||||||||||||||||
Sbjct 241 AGATGACGTAGTGATGAG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18581771843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5