BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63910.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496583 jgi|Araly1|496583|fgenesh2_kg.8__2399__AT5G63910.1 2551 0.0
> Ahg496583 jgi|Araly1|496583|fgenesh2_kg.8__2399__AT5G63910.1
Length=1644
Score = 2551 bits (1381), Expect = 0.0
Identities = 1563/1650 (95%), Gaps = 15/1650 (1%)
Strand=Plus/Plus
Query 1 GTTGACTAAAATGAAAGATTTC-CCGATAGCAATCTCCCTTCTGTTCGCTCTACTATCGC 59
|||||||||||||||| | ||| |||||||||||||||||||| |||||||| |||||||
Sbjct 1 GTTGACTAAAATGAAA-AATTCTCCGATAGCAATCTCCCTTCTCTTCGCTCTCCTATCGC 59
Query 60 CGGTTCTTCTACCTTGCTCCGGCGATTCCACCGGCGGCGTCGAGGATGATTCTCCAGCGA 119
||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| |||
Sbjct 60 CGGTTCTTCTACCTTGCTCCGGCGATTTCACGGGCGGCGTTGAGGATGAATCTCCTCCGA 119
Query 120 CCGTATGTATCGTCGGGAGTGGGATCGGAGGCTCATCCGTAGCTCACTTCCTCCGTAACT 179
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 120 CCGTATGTATCGTCGGGAGTGGAATCGGAGGCTCATCCGTAGCTCACTTCATCCGTAACT 179
Query 180 ACTCTGTTTCCACCGGCTTAAATCAAGCCAAGATCCTGATGTTTGAGCGTCACGAGATAG 239
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 180 ACTCTGTTTCCACCGGCTTAAATCGAGCCAAGATTCTGATGTTTGAGCGTCACGAGATAG 239
Query 240 TCGGTGGACGCATGAGGACCGTCACTGTCGCCGGTGATACTTTCGAAGCCGGCGGTTCGA 299
||||||||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||
Sbjct 240 TCGGTGGACGCATGAGGACAGTTACTGTAGCCGGTGATACCTTCGAGGCCGGTGGTTCGA 299
Query 300 TTCTCCATCCGAAGAACTACCACGTTAAGGATTTCGTCGAAAGGTTCAATCTGACGGTTC 359
|||| || ||||||||||| || ||||||||||||||||| ||||||||| |||||||||
Sbjct 300 TTCTGCACCCGAAGAACTATCATGTTAAGGATTTCGTCGAGAGGTTCAATTTGACGGTTC 359
Query 360 GATTACCGACGCCGATTGAAGAATCTTCAGCGATTGGAATCTGGGATGGGAAGAGATTTG 419
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 GATTGCCGACGCCGATTGAAGAATCTTCAGCGATTGGAATATGGGATGGGAAGAGATTTG 419
Query 420 TCGTCAAGACATTCGGTTCCGGTACCAAATTTCCGTTTTTGGATACGATCGTCTCTTGGG 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 TCGTCAAGACATTCGGTTCCGGTACCAAGTTTCCGTTTTTGGATACGATCGTCTCTTGGG 479
Query 480 TGAATGATCTCTACTTGTTCTTACGTTATGGGTTATCACTGCTGAGAATGAGCAGCTTCA 539
|||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||
Sbjct 480 TGAATGATCTCTACTTGTTCTTGCGTTATGGGTTCTCTCTGTTGAGAATGAGCAGCTTCA 539
Query 540 TTGAGAATACAGTTGATAATTTCTTGAAGTACTATGAAAGCTTAGAGTCAAGACCTATCT 599
|||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 540 TTGAGAGTACAGTTGATAATTTCTTGAAGTACTATGAAAGCCTAGAATCAAGACCTATCT 599
Query 600 TCGACAATGTTGAAGGGATGCTTAAATGGTCAGGCTTGTACAATCTCACAAAGCTCACTC 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCCACAATGTTGAAGGGATGCTTAAATGGTCAGGCTTGTACAATCTCACAAAGCTCACTC 659
Query 660 TACAGGAGAAATTATCTGAAGCTCAGCTTTCTCCTTTGTTAGTCAACGAGCTGGTTACGG 719
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 660 TACAGGAGAAATTGTCTGAAGCTCAGCTTTCTCCTTTATTAGTCAACGAGCTGGTTACCG 719
Query 720 TTATTACAAGGATAAACTATGGACAGAGTGTACTCATCAGTGGGTTGGCAGGTGCTGTCT 779
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 720 TTATTACAAGGATAAACTATGGACAGAGTGTACTCATCAGTGGGCTAGCAGGTGCTGTCT 779
Query 780 CTTTGGCGGGTTCAGGTGGAGGATTATGGTCTGTTGAAGGTGGAAACTGGCAGATGGCTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTTGGCGGGTTCAGGTGGAGGATTATGGTCTGTTGAAGGTGGAAACTGGCAGATGGCTG 839
Query 840 CAAAGCTCATTAATCATTCAGATGTTACGTTACACCTGAACGAGAAAATTGAATCCATTT 899
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 CAAAGCTGATTAATCATTCAGATGTTATGTTACACCTGAACGAGAAAATTGAATCCATTT 899
Query 900 CATATCTCGAAAACCATTACGAGCTTAAATCCACTAAAGGAAACAGCTACAAGTGTGATG 959
|| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 900 CACATCTCGGGAACCATTACGAGCTTAACTCCACAAAAGGAAACAGCTACAAGTGTGATG 959
Query 960 TCACAGTAGTTGCCACACCATTAGACGAAGTGGATATTCAGTTCTCACCCACGATCTCAA 1019
|||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 960 TCACAGTACTTGCCACACCACTAGACGAGGTGGATATTCAGTTCTCACCCGCGATCTCAA 1019
Query 1020 TTCCTAAGAGAGAACTACAACACACGCACACGACATTTGTGAGGGGGCTTTTAAACCCAG 1079
|||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1020 TTCCCAAGAGGGAACTACAACACACGCACACAACATTCGTGAGGGGGCTTTTAAACCCAG 1079
Query 1080 GATACTTTGGGATGAAATCGCTTTCAGATGTTCCAGCTTTGGTGGGAACCCTTGAAGATC 1139
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 GATACTTTGGGATGAAATCGCTTTCGGATGTTCCAGCTTTGGTGGGAACCCTTGAAGATC 1139
Query 1140 CTCTAATTCCATTCTCATGCATCTCAATTCTAAGGAAATATAGTAAAACAGATATGACAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTCTAATTCCATTCTCATGCATCTCAATTCTAAGGAAATATAGTAAAACAGATATGACAT 1199
Query 1200 ACAAGATTTTTACGCGACAACCTGCATCAGATTCGTTGCTTGATGAGCTCTTCAGTAGGA 1259
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1200 ACAAGATTTTTACGCGACAACCTGCATCTGATTCGTTGCTTGATGAGCTCTTCAGTAGGA 1259
Query 1260 GAACCGAAACCGTTCGAATAGACTGGGGTGCATACCCAAAGTACCACGCGCCTGAAGTTT 1319
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1260 GAACCGAAACCGTTCGAATAGACTGGGGTGCATATCCAAAGTACCACGCGCCTGAAGTTT 1319
Query 1320 TCGCACCATTCATATTAGATGACCATCACTTGTACTATGTGAATGCTTTTGAAAACGCGG 1379
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1320 TCGCACCATTCATATTAGATGACAATCATTTGTACTATGTGAATGCTTTTGAAAACGCGG 1379
Query 1380 CAAGCACAATGGAGACAAGTGCAGTGGCTGGTGAGAACATTGCCAGACTCATAATTTCCA 1439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CTAGCACAATGGAGACAAGTGCAGTGGCTGGTGAGAACATTGCCAGACTCATAATTTCCA 1439
Query 1440 GATTCATGACAAAGGAATCATTATCTTCCTCGGACAAAAGAAGCTGTAGTTCTGGTCTGC 1499
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GATTCATGACAAAGGAATCATCATCTTCCTCGGACAAAAGAAGCTGTAGTTCTGGTCTGC 1499
Query 1500 ACTCAGACTCATAAACAACTTTGGTCCCCACATAAACAAGGACTATTGGCTGTGTGTGTT 1559
||||||||| |||| |||||||||||||||||| |||||||||| ||| |||||| | ||
Sbjct 1500 ACTCAGACTTATAAGCAACTTTGGTCCCCACATGAACAAGGACTTTTGACTGTGT-T-TT 1557
Query 1560 TTGAAGAAGAATATGATGTTTATGTATATAGACACATAAA-ACAGT--TT-T--GAGTTA 1613
||||||||| |||||||| ||||||||||||| | ||| || || || | ||||||
Sbjct 1558 --GAAGAAGAACATGATGTTAATGTATATAGACA-ACAAACACTGTAATTGTTTGAGTTA 1614
Query 1614 CT--GATTGTGTTTGTTCCTCGTAACCTAA 1641
|| ||||||||||||||||||||||||||
Sbjct 1615 CTTTGATTGTGTTTGTTCCTCGTAACCTAA 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5