BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63940.1
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951209 jgi|Araly1|951209|scaffold_803096.1 3454 0.0
> Ahg951209 jgi|Araly1|951209|scaffold_803096.1
Length=2169
Score = 3454 bits (1870), Expect = 0.0
Identities = 2055/2143 (96%), Gaps = 17/2143 (1%)
Strand=Plus/Plus
Query 178 AGATGAAACCGACCGGAGAAGGAGGAGG-GG--AAGTCGCC---G--G-AG---CGGTGG 225
||||||| ||||| |||||||||||||| || |||||||| | | || ||||||
Sbjct 19 AGATGAATCCGACTGGAGAAGGAGGAGGAGGCAAAGTCGCCGGAGTCGAAGAAACGGTGG 78
Query 226 CGGAAGGTTCGGCGTTGTTAATTGTAGGAGTAAAGCCAGATGAATGGAGTAGAGAGGTTC 285
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 79 CGGAAGGTTCGGCGTTGTTAATTGTGGGTGTAAAGCCAGATGAATGGAGTCGAGAGGTTC 138
Query 286 TTACATGGTCTTTGGTGAATGTAGCGCGTCCTGGAGATCGAATCGTTGCTCTTCATGTTC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TTACATGGTCTTTGGTGAATGTAGCGCGTCCTGGAGATCGAATCGTTGCTCTTCATGTTC 198
Query 346 TCGATTATTCTCTAGAGGGCTCAACGTCGCTTATTTCGTTGGTTAGGAATTTTGATACTA 405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TCGATTACTCTCTAGAGGGCTCAACGTCGCTTATTTCGTTGGTTAGGAATTTTGATACTA 258
Query 406 TGCTTGGTGTTTATGAAAGCTTCTGCAACTTAAAACAGGTAGATTTGAAGTTGAAGGTTT 465
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 259 TGCTTGGTGTTTATGAAAGCTTCTGCAACTTAAAACAGGTAGATTTGAAGCTAAAGGTTT 318
Query 466 TCAGAGGGAAGTCAGCTAGGAAAGTTCTTGTACAAGAAGTTAAATCGTGTGGAGCTACAA 525
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 319 TCAGAGGGAAGTCAGCTAGGAAAGTTCTTGTACAAGAAGTGAAATCGTGTGGAGCGACAA 378
Query 526 GTTTAATCGTTGGTTCCTCTAGGAAACATCACACTATCCGTTCTTCAGCTTCTTTAGCCA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GTTTAATCGTTGGTTCCTCTAGGAAACATCACACTATCCGTTCTTCAGCTTCTTTAGCCA 438
Query 586 AGTATTGTGCCAGGAATCTTGCCAAGGATGTCTCTGTTTTTGCTGTTAAAAGTGGCAAGA 645
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 439 AGTATTGTGCCAGGAATCTTGCCAAGGATGTCTCTGTTTTTGCTGTCAAGAGTGGCAAAA 498
Query 646 TTATGTTCCGCAGAGTACCTAATACCAATGGTGCAGATGGTCCACAGATGAATATTCCCT 705
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 499 TTATGTTCCGCAGAGTACCTAATACCAGTGGTGCAGATGGTCCACAGATGAATCTTCCCT 558
Query 706 CTTTAGTTTGTGGATCACCAGATATTGCTATTGAAGCGGCAAAGATTGGAAACAGTTTTA 765
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 559 CTTTAGTTTGTGGATCACCTGACATTGCTATTGAAGCGGCAAAGATTGGAAACAGTTTTA 618
Query 766 GCCCTGCTAGAACGAGCTCACGCTGGACAAGAACTAGTCGTAGTTCGTCATTGCAGTCTC 825
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 619 GCCCTGCAAGAACGAGCTCACGCTGGACAAGAACTAGTCGTAGTTCATCATTGCAGTCTT 678
Query 826 CTGACAGCTTAGGTGTAGACAATTTGTTGGCTTTAGTGCCAGTACAAACAAATGAGACTG 885
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 679 CTGAAAGCTTAGGTGTAGACAATTCGTTGGCTTTAGTGCCAGTACAAACAAATGAGACCG 738
Query 886 ATTCTGGTTCCCTTGAGTCAGGACCAGGTTGGCATTTTCTTCGCGGGCTTTACGGTAATA 945
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 739 ATTCTGGTTCCCTTGAGTCAGGACCAGGTTGGCATTTTCTTCGCGGGATTTACGGTAAT- 797
Query 946 ATCGAAAAAGCTGGACCAAAGTTTCTGCTAAGAAGGCTGTACTTCAGTGGGTTTCGAGGC 1005
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 798 --CGAAAAAGTTGGCCCAAAGTCTCTGCTAAGAAGGCTGTACTTCAGTGGGTTTCCAGGC 855
Query 1006 TGCGAGGTCGGCATTCAGAAACTGTAATCTATCTGGATAGGAAACGGAGTGACTCTGGTT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TGCGAGGTCGGCATTCAGAAACTGTAATCTATCTGGATAGGAAACGGAGTGACTCTGGTT 915
Query 1066 GTGATGAAGATTGCTCTTCTAGTATTGATGGTGAAGATGTTTCTATATCACGGTTTGGTT 1125
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 916 GTGATGAAGATTGCTCTTCTAGTATTGATGGTGAAGATGTTTCCATTTCACGATTTGGTT 975
Query 1126 CTGAGCTTATGCAGTCACCTCTTTCTCCTTTCATTGGATCAAACAACATTCCAGAAGAGC 1185
|||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 976 CTGAGCTTATGCAGTCTCCTCTTTCTCCCTGCATTGGATCAAACAACATTCCAGAAGAGC 1035
Query 1186 TGGAAGGTCTACATGAAAAGTACTCTTCCACATGTAGATTATTCACATACGAGGAAGTCT 1245
|||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1036 TGGAGGGTCTACACGAAAAATACTCTTCCACATGTAGATTATTCACATACGATGAAGTTT 1095
Query 1246 TGTCAATTACCTCAAACTTTGCATCTGAGAACTTGGTTGGAGAAGGTGGTAATAGTTATG 1305
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1096 TGTCAATTACCTCAAACTTTGCATCCGAGAACTTGGTTGGAGAAGGTGGTGATAGTTATG 1155
Query 1306 TTTATAGAGGAGATCTACCAGATGGCAGGGAATTAGCTGTCAAAATATTGAAA-CCTTGT 1364
||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 1156 TTTATAGAGGAGATCTACCAGATGGGAGGGAATTAGCTGTCAAAATATT-AAAGCCTTGT 1214
Query 1365 CTGGATGTGTTGAAGGAATTTATACTGGAAATTGAAGTCATTACCAGTGTACATCACAAA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 CTGGATGTGTTGAAGGAATTTATACTGGAAATTGAAGTCATTACCAGTGTACATCACAAA 1274
Query 1425 AATATAGTATCTCTCTTTGGTTTCTGTTTCGAGAATAATAATTTGATGCTGGTATACGAT 1484
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1275 AATATAGTATCTCTCTTTGGTTTCTGTTTTGAGAATAATAATTTGATGCTGGTGTACGAT 1334
Query 1485 TATCTACCACGAGGAAGCCTTGAAGAGAACCTTCATGGCAATAGAAAGGATGCAAAGAAA 1544
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1335 TATCTACCACGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAGAAAGGATGCAAAAAAA 1394
Query 1545 TTTGGCTGGATGGAGAGATATAAGGTGGCAGTGGGTGTTGCCGAGGCGTTAGACTATCTG 1604
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TTTGGCTGGCTGGAGAGATATAAGGTGGCAGTGGGTGTTGCCGAGGCGTTAGACTATCTA 1454
Query 1605 CATAATACTCATGATCCAGAAGTAATTCACCGGGATGTCAAATCTTCTAATGTTCTTTTG 1664
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1455 CATAATACTCATGAGCCAGAAGTGATTCACCGGGATGTGAAATCTTCTAATGTTCTTTTG 1514
Query 1665 GCAGATGATTTTGAGCCACAGCTCTCAGATTTCGGATTCGCCAGCTTGGCTTCAAGTACC 1724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GCAGATGATTTTGAGCCACAGCTCTCAGATTTCGGATTCGCCAGCTTGGCTTCAAGTACT 1574
Query 1725 TCACAGCATGTAGCGGGTGGGGATATTGCCGGGACATTTGGTTACCTAGCACCAGAGTAC 1784
|| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1575 TCGCAGCACGTGGCGGGTGGGGATATTGCTGGGACATTTGGTTACCTAGCACCAGAGTAC 1634
Query 1785 TTCATGCACGGTAAAGTAACCGACAAGATTGATGTCTATGCTTTTGGTGTTGTATTGCTC 1844
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1635 TTCATGCACGGTAAAGTAACCGACAAGATCGATGTCTATGCTTTTGGTGTTGTATTGCTC 1694
Query 1845 GAGCTCATATCGGGTAGAAAACCAATCTGCGTCGACCAGTCTAAAGGCCAGGAGAGCCTT 1904
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 GAGCTCCTATCGGGTAGAAAACCAATCTGCGTCGACCAGTCTAAAGGCCAGGAGAGCCTT 1754
Query 1905 GTCTTGTGGGCAAACCCAATTCTAGATAGTGGAAAGTTTGCTCAGTTACTGGATCCCAGT 1964
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1755 GTCTTGTGGGCAAACCCAATTCTAGAGAGTGGAAAGTTTGCTCAGTTACTGGATCCCAGT 1814
Query 1965 CTAGAAAATGATAACAGTAACGATCTAATCGAGAAACTATTGTTAGCTGCCACGCTATGC 2024
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1815 CTAGAAAATGATAACAGTAACGATCTAGTCGAGAAACTATTGTTAGCTGCCACGCTATGC 1874
Query 2025 ATCAAACGCACACCTCATGACCGTCCGCAAATTGGCCTTGTCCTAAAGATATTACAAGGG 2084
|||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 1875 ATCAAACGCACACCTCATGACCGTCCGCAAATTGGCCTCGCCCTAAAGATCTTACAAGGG 1934
Query 2085 GAAGAAGAAGCAACAGAGTGGGGAAAGCAACAAGTGAGAGCCTCAGAAGACGTGAGCGCA 2144
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1935 GACGAAGAAGCAACAGAGTGGGGAAAGCAACAAGTGAGAGCCTCAGAAGACGAAAGCGCA 1994
Query 2145 TATTTGACAAATATAGAATCACACATAAACCTCGCATTGCTTGATTTGGAAGATGATGCA 2204
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1995 TATATGACAAATATAGAATCACACATAAACCTTGCATTGCTTGATTTGGAAGATGATGCG 2054
Query 2205 GCTTCTGATAGCAGCCCTGAAGCTAGTAGTATCTCTGTTGAGGAATACTTGAAAGGGCGA 2264
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2055 GCTTCTGATAGCAGCCCTGAAGCAAGCAGTATCTCTGTTGAGGAATACTTGAAAGGGCGA 2114
Query 2265 TGGAGCCGCACTGCTAGCTTCAACTTCAACTAATAATTTTTAC 2307
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 TGGAGCCGCACTGCTAGCTTCAACTTCAACTAATAATTTTTAC 2157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95225612500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5