BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63940.1 Length=2526 Score E Sequences producing significant alignments: (Bits) Value Ahg951209 jgi|Araly1|951209|scaffold_803096.1 3454 0.0 > Ahg951209 jgi|Araly1|951209|scaffold_803096.1 Length=2169 Score = 3454 bits (1870), Expect = 0.0 Identities = 2055/2143 (96%), Gaps = 17/2143 (1%) Strand=Plus/Plus Query 178 AGATGAAACCGACCGGAGAAGGAGGAGG-GG--AAGTCGCC---G--G-AG---CGGTGG 225 ||||||| ||||| |||||||||||||| || |||||||| | | || |||||| Sbjct 19 AGATGAATCCGACTGGAGAAGGAGGAGGAGGCAAAGTCGCCGGAGTCGAAGAAACGGTGG 78 Query 226 CGGAAGGTTCGGCGTTGTTAATTGTAGGAGTAAAGCCAGATGAATGGAGTAGAGAGGTTC 285 ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| Sbjct 79 CGGAAGGTTCGGCGTTGTTAATTGTGGGTGTAAAGCCAGATGAATGGAGTCGAGAGGTTC 138 Query 286 TTACATGGTCTTTGGTGAATGTAGCGCGTCCTGGAGATCGAATCGTTGCTCTTCATGTTC 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 TTACATGGTCTTTGGTGAATGTAGCGCGTCCTGGAGATCGAATCGTTGCTCTTCATGTTC 198 Query 346 TCGATTATTCTCTAGAGGGCTCAACGTCGCTTATTTCGTTGGTTAGGAATTTTGATACTA 405 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 TCGATTACTCTCTAGAGGGCTCAACGTCGCTTATTTCGTTGGTTAGGAATTTTGATACTA 258 Query 406 TGCTTGGTGTTTATGAAAGCTTCTGCAACTTAAAACAGGTAGATTTGAAGTTGAAGGTTT 465 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 259 TGCTTGGTGTTTATGAAAGCTTCTGCAACTTAAAACAGGTAGATTTGAAGCTAAAGGTTT 318 Query 466 TCAGAGGGAAGTCAGCTAGGAAAGTTCTTGTACAAGAAGTTAAATCGTGTGGAGCTACAA 525 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 319 TCAGAGGGAAGTCAGCTAGGAAAGTTCTTGTACAAGAAGTGAAATCGTGTGGAGCGACAA 378 Query 526 GTTTAATCGTTGGTTCCTCTAGGAAACATCACACTATCCGTTCTTCAGCTTCTTTAGCCA 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 GTTTAATCGTTGGTTCCTCTAGGAAACATCACACTATCCGTTCTTCAGCTTCTTTAGCCA 438 Query 586 AGTATTGTGCCAGGAATCTTGCCAAGGATGTCTCTGTTTTTGCTGTTAAAAGTGGCAAGA 645 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | Sbjct 439 AGTATTGTGCCAGGAATCTTGCCAAGGATGTCTCTGTTTTTGCTGTCAAGAGTGGCAAAA 498 Query 646 TTATGTTCCGCAGAGTACCTAATACCAATGGTGCAGATGGTCCACAGATGAATATTCCCT 705 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 499 TTATGTTCCGCAGAGTACCTAATACCAGTGGTGCAGATGGTCCACAGATGAATCTTCCCT 558 Query 706 CTTTAGTTTGTGGATCACCAGATATTGCTATTGAAGCGGCAAAGATTGGAAACAGTTTTA 765 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 559 CTTTAGTTTGTGGATCACCTGACATTGCTATTGAAGCGGCAAAGATTGGAAACAGTTTTA 618 Query 766 GCCCTGCTAGAACGAGCTCACGCTGGACAAGAACTAGTCGTAGTTCGTCATTGCAGTCTC 825 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 619 GCCCTGCAAGAACGAGCTCACGCTGGACAAGAACTAGTCGTAGTTCATCATTGCAGTCTT 678 Query 826 CTGACAGCTTAGGTGTAGACAATTTGTTGGCTTTAGTGCCAGTACAAACAAATGAGACTG 885 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 679 CTGAAAGCTTAGGTGTAGACAATTCGTTGGCTTTAGTGCCAGTACAAACAAATGAGACCG 738 Query 886 ATTCTGGTTCCCTTGAGTCAGGACCAGGTTGGCATTTTCTTCGCGGGCTTTACGGTAATA 945 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 739 ATTCTGGTTCCCTTGAGTCAGGACCAGGTTGGCATTTTCTTCGCGGGATTTACGGTAAT- 797 Query 946 ATCGAAAAAGCTGGACCAAAGTTTCTGCTAAGAAGGCTGTACTTCAGTGGGTTTCGAGGC 1005 |||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 798 --CGAAAAAGTTGGCCCAAAGTCTCTGCTAAGAAGGCTGTACTTCAGTGGGTTTCCAGGC 855 Query 1006 TGCGAGGTCGGCATTCAGAAACTGTAATCTATCTGGATAGGAAACGGAGTGACTCTGGTT 1065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 TGCGAGGTCGGCATTCAGAAACTGTAATCTATCTGGATAGGAAACGGAGTGACTCTGGTT 915 Query 1066 GTGATGAAGATTGCTCTTCTAGTATTGATGGTGAAGATGTTTCTATATCACGGTTTGGTT 1125 ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct 916 GTGATGAAGATTGCTCTTCTAGTATTGATGGTGAAGATGTTTCCATTTCACGATTTGGTT 975 Query 1126 CTGAGCTTATGCAGTCACCTCTTTCTCCTTTCATTGGATCAAACAACATTCCAGAAGAGC 1185 |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct 976 CTGAGCTTATGCAGTCTCCTCTTTCTCCCTGCATTGGATCAAACAACATTCCAGAAGAGC 1035 Query 1186 TGGAAGGTCTACATGAAAAGTACTCTTCCACATGTAGATTATTCACATACGAGGAAGTCT 1245 |||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| | Sbjct 1036 TGGAGGGTCTACACGAAAAATACTCTTCCACATGTAGATTATTCACATACGATGAAGTTT 1095 Query 1246 TGTCAATTACCTCAAACTTTGCATCTGAGAACTTGGTTGGAGAAGGTGGTAATAGTTATG 1305 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1096 TGTCAATTACCTCAAACTTTGCATCCGAGAACTTGGTTGGAGAAGGTGGTGATAGTTATG 1155 Query 1306 TTTATAGAGGAGATCTACCAGATGGCAGGGAATTAGCTGTCAAAATATTGAAA-CCTTGT 1364 ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| Sbjct 1156 TTTATAGAGGAGATCTACCAGATGGGAGGGAATTAGCTGTCAAAATATT-AAAGCCTTGT 1214 Query 1365 CTGGATGTGTTGAAGGAATTTATACTGGAAATTGAAGTCATTACCAGTGTACATCACAAA 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1215 CTGGATGTGTTGAAGGAATTTATACTGGAAATTGAAGTCATTACCAGTGTACATCACAAA 1274 Query 1425 AATATAGTATCTCTCTTTGGTTTCTGTTTCGAGAATAATAATTTGATGCTGGTATACGAT 1484 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1275 AATATAGTATCTCTCTTTGGTTTCTGTTTTGAGAATAATAATTTGATGCTGGTGTACGAT 1334 Query 1485 TATCTACCACGAGGAAGCCTTGAAGAGAACCTTCATGGCAATAGAAAGGATGCAAAGAAA 1544 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1335 TATCTACCACGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAGAAAGGATGCAAAAAAA 1394 Query 1545 TTTGGCTGGATGGAGAGATATAAGGTGGCAGTGGGTGTTGCCGAGGCGTTAGACTATCTG 1604 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1395 TTTGGCTGGCTGGAGAGATATAAGGTGGCAGTGGGTGTTGCCGAGGCGTTAGACTATCTA 1454 Query 1605 CATAATACTCATGATCCAGAAGTAATTCACCGGGATGTCAAATCTTCTAATGTTCTTTTG 1664 |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1455 CATAATACTCATGAGCCAGAAGTGATTCACCGGGATGTGAAATCTTCTAATGTTCTTTTG 1514 Query 1665 GCAGATGATTTTGAGCCACAGCTCTCAGATTTCGGATTCGCCAGCTTGGCTTCAAGTACC 1724 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1515 GCAGATGATTTTGAGCCACAGCTCTCAGATTTCGGATTCGCCAGCTTGGCTTCAAGTACT 1574 Query 1725 TCACAGCATGTAGCGGGTGGGGATATTGCCGGGACATTTGGTTACCTAGCACCAGAGTAC 1784 || ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1575 TCGCAGCACGTGGCGGGTGGGGATATTGCTGGGACATTTGGTTACCTAGCACCAGAGTAC 1634 Query 1785 TTCATGCACGGTAAAGTAACCGACAAGATTGATGTCTATGCTTTTGGTGTTGTATTGCTC 1844 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1635 TTCATGCACGGTAAAGTAACCGACAAGATCGATGTCTATGCTTTTGGTGTTGTATTGCTC 1694 Query 1845 GAGCTCATATCGGGTAGAAAACCAATCTGCGTCGACCAGTCTAAAGGCCAGGAGAGCCTT 1904 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1695 GAGCTCCTATCGGGTAGAAAACCAATCTGCGTCGACCAGTCTAAAGGCCAGGAGAGCCTT 1754 Query 1905 GTCTTGTGGGCAAACCCAATTCTAGATAGTGGAAAGTTTGCTCAGTTACTGGATCCCAGT 1964 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1755 GTCTTGTGGGCAAACCCAATTCTAGAGAGTGGAAAGTTTGCTCAGTTACTGGATCCCAGT 1814 Query 1965 CTAGAAAATGATAACAGTAACGATCTAATCGAGAAACTATTGTTAGCTGCCACGCTATGC 2024 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1815 CTAGAAAATGATAACAGTAACGATCTAGTCGAGAAACTATTGTTAGCTGCCACGCTATGC 1874 Query 2025 ATCAAACGCACACCTCATGACCGTCCGCAAATTGGCCTTGTCCTAAAGATATTACAAGGG 2084 |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| Sbjct 1875 ATCAAACGCACACCTCATGACCGTCCGCAAATTGGCCTCGCCCTAAAGATCTTACAAGGG 1934 Query 2085 GAAGAAGAAGCAACAGAGTGGGGAAAGCAACAAGTGAGAGCCTCAGAAGACGTGAGCGCA 2144 || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1935 GACGAAGAAGCAACAGAGTGGGGAAAGCAACAAGTGAGAGCCTCAGAAGACGAAAGCGCA 1994 Query 2145 TATTTGACAAATATAGAATCACACATAAACCTCGCATTGCTTGATTTGGAAGATGATGCA 2204 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1995 TATATGACAAATATAGAATCACACATAAACCTTGCATTGCTTGATTTGGAAGATGATGCG 2054 Query 2205 GCTTCTGATAGCAGCCCTGAAGCTAGTAGTATCTCTGTTGAGGAATACTTGAAAGGGCGA 2264 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 2055 GCTTCTGATAGCAGCCCTGAAGCAAGCAGTATCTCTGTTGAGGAATACTTGAAAGGGCGA 2114 Query 2265 TGGAGCCGCACTGCTAGCTTCAACTTCAACTAATAATTTTTAC 2307 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2115 TGGAGCCGCACTGCTAGCTTCAACTTCAACTAATAATTTTTAC 2157 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95225612500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5