BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63970.1
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332615 jgi|Araly1|332615|fgenesh1_pm.C_scaffold_8001958 1698 0.0
> Ahg332615 jgi|Araly1|332615|fgenesh1_pm.C_scaffold_8001958
Length=1155
Score = 1698 bits (919), Expect = 0.0
Identities = 989/1023 (97%), Gaps = 4/1023 (0%)
Strand=Plus/Plus
Query 232 ATGAACATGAGCAATAAACGTAATCAGCAACCTTCGTATATTGCTGATCATTTCAGCAGT 291
||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAACAGGAGCAATCAACGTAATCAGCAACCTTCATATATTGCTGATCATTTCAGCAGT 60
Query 292 TTGGATCAGGTGATAACTTCTCTGAGAGAAGCTGGACTTGAATCTTCAAATCTGATTCTA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGATCAGGTGATAACTTCTCTGAGAGAAGCTGGACTTGAATCTTCAAATCTGATTCTA 120
Query 352 GGAATTGACTTTACCAAGAGCAATGAGTGGACAGGGAGATATTCATTCAATAGAAAAAGC 411
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GGAATTGACTTTACCAAGAGCAATGAGTGGACAGGGAGATATTCATTCAACAGAAAAAGC 180
Query 412 CTTCATGCCATTGGTAAAAGACAGAATCCATATGAGAAAGCAATATCGATTATTGGTCGT 471
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 181 CTTCATGCCATTGGTAAAAGACAGAATCCATATGAGCAAGCAATATCGATAATTGGTCGT 240
Query 472 ACTTTGTCTCCCTTTGATGAAGATGATCTTATACCTTGTTTCGGTTTTGGCGATGTAACA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTTTGTCTCCCTTTGATGAAGATGATCTTATACCTTGTTTCGGTTTTGGCGATGTAACA 300
Query 532 ACGCGAGATCAATATGTATTCAGCTTTTATCCCGAGAACAAAAGCTGCGACGGATTGGAA 591
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACACGAGATCAATATGTTTTCAGCTTTTATCCCGAGAACAAAAGCTGCGACGGATTGGAA 360
Query 592 AACGCAGTTAAAAGATATAGAGAGATTGTCCCACATTTGAAGTTGTCCGGTCCTACCTCG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACGCAGTTAAAAGATATAGAGAGATTGTCCCACATTTGAAGTTGTCCGGTCCTACCTCG 420
Query 652 TTTGCACCGGTTATTGATGCTGCCATCAACATAGTTGAGCAGAACAATATGCAATACCAT 711
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TTCGCACCGGTTATTGATGCTGCCATTAACATAGTTGAGCAGAACAATATGCAATACCAT 480
Query 712 GTTCTCGTCATTATCGCAGATGGTCAGGTCACAAGAAATCCAGATGTGCCGCTTGGTCGA 771
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTCTCGTCATTATTGCAGATGGTCAGGTCACAAGAAATCCAGATGTGCCGCTTGGTCGA 540
Query 772 CTTAGTCCACAGGAAGAAGCTACTATGAACTCGATAATGGCAGCGAGCCATTACCCATTG 831
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CTTAGTCCACAGGAAGAAGCTACTATGAACTCGATAATGGCAGCTAGCCATTACCCATTG 600
Query 832 TCGATAGTCTTGGTTGGAGTAGGAGATGGACCATGGGACACAATGAAACAATTCGATGAC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGATAGTCTTGGTTGGAGTAGGAGATGGACCATGGGACACAATGAAACAATTCGATGAC 660
Query 892 AATATTCCTCACCGTGAATTCGATAACTTCCAGTTTGTAAACTTCACGAAGATAATGTCA 951
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 661 AATATTCCTCACCGTGAATTCGATAACTTCCAGTTTGTGAACTTCACAAAGATAATGTCA 720
Query 952 GAGCACAAAGATGCGGCTAAGAAGGAGGCTGCTTTCGCACTCGCAGCTCTCATGGAGATC 1011
||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 721 GAGCATAAAGATGCGGCTAAAAAGGAGGCTGCTTTTGCGCTCGCAGCTCTCATGGAGATC 780
Query 1012 CCTTTTCAATACAAGGCTACATTAAGTCTCAATAGAAAACCAGTGCGCAGTTCCCATCAG 1071
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 781 CCTTTTCAATACAAGGCCACATTAAGTCTCAATAGAAAACCAGTTCGCAGTTCCCATCTG 840
Query 1072 CACCACAAGCCACTCCCGCCACCACCAGAGGTTATAGAGCGTGACAATGCTGTTAGATCG 1131
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 CACCACAAGCCACTCCCTCCACCACCTGAGGTTATAGAGCGTGACAATGCTGTTAGATCA 900
Query 1132 GTGCCAAATCAGATGACAGAAACTGCAGAGAAAAGTGACAGACTCGCT-CCT-TCCACAG 1189
|||||||||| ||||||||||||||||||||||||||||||| | ||| ||| | ||||
Sbjct 901 GTGCCAAATCCGATGACAGAAACTGCAGAGAAAAGTGACAGAAT-GCTTCCTGTT-ACAG 958
Query 1190 TGCCGGTATGCCCGATTTGCTTGACGAATCCAAAGGACATGGCTTTTAGCTGCGGTCACA 1249
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 959 TGCCGGTATGCCCAATTTGCTTGACGAATCCTAAGGACATGGCCTTTAGCTGCGGTCACA 1018
Query 1250 CGA 1252
|||
Sbjct 1019 CGA 1021
Score = 147 bits (79), Expect = 3e-34
Identities = 85/88 (97%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1251 GACATGCAAGGAATGCGGAGTTGTTATCACAACATGCCCACTATGCAGACAACCAATAAC 1310
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1063 GACATGCAAGGAATGTGGAGTTGTTGTCACAACATGCCCACTATGCAGACAACCTATAAC 1122
Query 1311 AACAAGGATAAGGCTGTACACTTGACTC 1338
||||||||||||||||||||||||||||
Sbjct 1123 AACAAGGATAAGGCTGTACACTTGACTC 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58811338280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5