BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63980.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496591 jgi|Araly1|496591|fgenesh2_kg.8__2407__AT5G63980.1 2025 0.0
> Ahg496591 jgi|Araly1|496591|fgenesh2_kg.8__2407__AT5G63980.1
Length=1249
Score = 2025 bits (1096), Expect = 0.0
Identities = 1203/1254 (96%), Gaps = 10/1254 (1%)
Strand=Plus/Plus
Query 6 ATATTTATCTTCTTGAAAAG-CGAATGATGTCTATAAATTGTTTTCGAACAGCGAAGGCT 64
||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 1 ATATTTATCTTCTTG-AAAGCCGAAACATGTCTATAAATTGTTTTCGAACAGCCAAGGCT 59
Query 65 CCGCTTCAATCATTTGTAGCAGTAAGAACGAATTCGAGACCTAGAAATTCATCGAACCGT 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CCGCTTCAATCATTTGTAGCAGTAAGAACGAATTCGAGACCTAGAAATTCATCGAACCGT 119
Query 125 CTCGTTTCTGTATTCGGACGCAAGTCTTCTTCTCCTTCATTTGTTACTCTCAGAGTTGTT 184
|||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 120 CTCGCTTCTGTCTTCGGAAGCAAG---TCTTCTCCTTCATTTGTTACTCTCAGAGTTGTT 176
Query 185 TCATCGATGGCTTACGAGAAAGAGCTTGATGCTGCTAAGAAAGCTGCTTCACTCGCTGCT 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 177 TCATCGATGGCTTACGAGAAAGAGCTTGATGCTGCTAAAAAAGCTGCTTCACTCGCTGCT 236
Query 245 CGTCTCTGTCAGAAAGTTCAAAAGGCTTTGTTGCAATCAGATGTGCAATCAAAATCTGAT 304
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 237 CGTCTCTGTCAGAAAGTTCAAAAGGCTTTGTTGCAATCGGATGTCCAATCAAAATCTGAT 296
Query 305 AAAAGTCCAGTGACCGTTGCTGATTATGGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAAAGTCCAGTGACCGTTGCTGATTATGGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAA 356
Query 365 AAAGAGCTCAGTTCTGAACCCTTTTCATTGGTGGCTGAAGAGGACTCAGGCGATCTACGC 424
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 AAGGAGCTCAGTTCTGAACCCTTTTCATTGGTGGCTGAGGAGGACTCAGGCGATCTACGC 416
Query 425 AAGGA-TGGTTCTCAGGATACTCTGGAGCGCATCACAAAACTCGTGAACGACACTTTGGC 483
||||| | |||||| |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 417 AAGGACT-GTTCTCGGGATACGCTGGAGCGCATCACGAAACTCGTGAACGACACTTTGGC 475
Query 484 TACCGAGGAATCGTTTAATGGCTCTACTTTGTCTACTGATGATCTACTTAGAGCCATTGA 543
||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 476 TACTGAGGAATCGTTTGGTGGTTCTACTTTGTCTACAGATGATCTACTTAGAGCCATTGA 535
Query 544 CTGTGGAACATCTGAAGGTGGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGG 603
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 536 CTGTGGAACATCTGAAGGTGGTCCAAATGGCCGACATTGGGTCTTGGATCCTATTGATGG 595
Query 604 CACTAAAGGATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGG 663
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 596 CACTAAAGGATTTCTGAGAGGAGATCAATACGCAGTAGCGCTAGGATTGCTGGAGGAAGG 655
Query 664 GAAAGTAGTTTTAGGTGTGCTTGCTTGTCCAAACTTGCCGTTAGCATCCATAGCAGGAAA 723
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 656 GAAAGTAGTTTTAGGTGTGCTTGCTTGTCCAAACTTGCCGTTAGCTTCCATAGCAGGAAA 715
Query 724 CAACAAG---AACAAATCTTCGTCAGACGAAATTGGATGCCTCTTCTTTGCTACAATTGG 780
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 CAACAAGAACAACAAATCTTCGTCAGATGAAATTGGATGCCTCTTCTTTGCTACAATTGG 775
Query 781 TTCAGGGACATATATGCAGCTCCTAGATTCAAAATCTTCTCCTGTAAAAGTGCAAGTCTC 840
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 776 TTCAGGGACATATATGCAGCTCCTAGATTCGAAATCTTCTCCTGTCAAAGTACAAGTCTC 835
Query 841 TAGTGTTGAGAATCCTGAAGAGGCATCGTTCTTCGAGTCATTCGAAGGAGCTCACTCTCT 900
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 836 TAGTGTGGAGAATCCTGAAGAGGCATCGTTCTTCGAGTCATTTGAAGGAGCTCATTCTCT 895
Query 901 ACATGACTTATCCAGCTCCATTGCCAATAAACTCGGTGTCAAAGCTCCACCAGTCCGTAT 960
|| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 896 TCACGATTTATCCAGCTCCATTGCCAATAAACTTGGTGTCAAAGCTCCACCTGTCCGTAT 955
Query 961 TGATAGCCAAGCAAAGTATGGAGCTTTATCAAGAGGAGATGGAGCTATATACTTACGGTT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CGATAGCCAAGCAAAGTATGGAGCTTTATCAAGAGGAGATGGAGCTATATACTTACGGTT 1015
Query 1021 TCCTCATAAAGGATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTAC 1080
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1016 TCCTCATAAAGGATACCGCGAAAAGATTTGGGACCATGTTGCTGGTGCTATAGTTGTTAC 1075
Query 1081 AGAGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGATTTCTCGAAAGGGAA 1140
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1076 AGAGGCGGGTGGAATAGTGACAGACGCAGCAGGAAAGCCACTGGATTTCTCGAAAGGGAA 1135
Query 1141 GTATCTTGATTTGGACACAGGCATTATCGTTGCTAACGAGAAGCTAATGCCTCTGCTTTT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTATCTTGATTTGGACACAGGCATTATCGTTGCTAACGAGAAGCTAATGCCTCTGCTTTT 1195
Query 1201 GAAAGCAGTTCGTGACTCCATAGCTGAGCAAGAGAAAGCTTCAGCTCTCTGATT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GAAAGCAGTTCGTGACTCCATAGCTGAGCAAGAGAAAGCTTCAGCTCTCTGATT 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5