BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63990.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496593 jgi|Araly1|496593|fgenesh2_kg.8__2409__AT5G63990.1 2032 0.0
> Ahg496593 jgi|Araly1|496593|fgenesh2_kg.8__2409__AT5G63990.1
Length=1328
Score = 2032 bits (1100), Expect = 0.0
Identities = 1263/1338 (94%), Gaps = 25/1338 (2%)
Strand=Plus/Plus
Query 21 AGTTGCTTCAGAGTCGCGAGAGGTTTTTCCATTCATATCATAAAAATCGATTCTTTCAGA 80
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 1 AGTTGCTTCAGAGTCGCGAGAGGTTTTT-CATTCATATCATAAAAATCGATTC-TTGAGA 58
Query 81 GATTTTCTTCTTCAACTTCGTGGTAC-TC-TTT-TGCTTTACCCATTTTTCAATGTCTTA 137
|||||||||||||| |||||| | | || ||| | ||| | || ||||||||||||||
Sbjct 59 GATTTTCTTCTTCATCTTCGT-CTTCTTCGTTTCTTCTTCAGCC--TTTTCAATGTCTTA 115
Query 138 CGATGAGATGCTTTCTGCTGCGAAGAAAGCTGTTTCTCTCGCTGCTCGTCTCAGCAACGA 197
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 116 CGATGAGATGCTTTCTGCTGCCAAGAAAGCTGTCTCTCTCGCTGCTCGTCTCAGCAACCA 175
Query 198 AGTGAGGAAATCTCTGTTGGTAACTGACGTTTGGAACAAATCAGATGATAGTCCTGTTAC 257
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 176 AGTGAGGAAATCTCTGTTGGTATCTGACGTTTGGAACAAATCAGATGAGAGTCCTGTTAC 235
Query 258 TGTTGCTGATTATGGTTCGCAGGCGGTGGTTAGCCTTGTACTGGAAAGGGAACTCCAGAA 317
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 236 TGTTGCTGATTATGGTTCGCAGGCCGTGGTTAGCCTTGTACTCGAAAGGGAACTCCTGAA 295
Query 318 TGAACCTGTGTCTTTAGTGGCTGAAGAGGATTCTGGTGAGTTAAGGAAGATTGCTGCTGA 377
|||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 296 TGAACCTGTGTCATTAGTAGCTGAAGAGGATTCTGGTGAGCTAAGGAAGATTGCTGCTGA 355
Query 378 GACCGTTTTGGCTCGTATTACAGAGCTTGTCAAAGATACTCTTGCAAGTGATGAATCATA 437
||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 356 GACTGTTTTGGCACGTATTACAGAGCTTGTGAAAGATACTCTTGCCAGTGATGAATCATA 415
Query 438 TGCTATTGCTTCTCCTTTGACTTCGGATGATGTGCTCAACGCTATAGATCGTGGTAAATC 497
||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 416 TGC---TGCTTCTCCTTTGTCTTCCGATGATGTGCTCAACGCTATAGACCGTGGTAAATC 472
Query 498 AGAAGGAGGTCCTAAGGGTCGCCACTGGATCTTGGATCCTATTGGTGGCACTAGAGGATT 557
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 473 AGAAGGAGGTCCTATGGGTCGCCATTGGATCTTGGATCCTATAGGTGGCACTAGAGGATT 532
Query 558 TATAAGAGGAGAACAATATGCAATAGGATTAGCATTGTTGGTGGAAGGCAAAGTAGTACT 617
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 533 TATAAGAGGAGAACAATATGCAATAGGATTAGCATTGTTGGTGGATGGCAAAGTAGTACT 592
Query 618 AGGTGTAATGGCTTGTCCTAAGCTTCCATTGGCATCAA---CTGCTGGTAATGCACTCAA 674
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 593 AGGTGTAATGGCTTGTCCTAAGCTTCCATTGGCATCAACTGCTGCTGGTAACACACTCAA 652
Query 675 GTCTTTACCTGAAAAAGTTGGTTGCCTTTTCTATGGTTCGGTTGGCAATGGGACTTATGT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GTCTTTACCTGAAAAAGTTGGTTGCCTTTTCTATGGTTCGGTTGGCAATGGGACTTATGT 712
Query 735 CCAGTCTCTCAGTGTCGACTCTCTTCCTGCGAAGGTGGAGGTTAGCAGCATAGATGATCC 794
||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 713 CCAGTCTCTCAGTGTTGACTCTCCTCCTGTGAAGGTGGAGGTAAGCAGCATAGATGATCC 772
Query 795 TGCGAAAGCGAGTTTCTTCGAGTCATACCACACACCTGTCCCCATCCATAACACCATTGC 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CGCGAAAGCGAGTTTCTTCGAGTCATACCACACACCTGTCCCCATCCATAACACCATTGC 832
Query 855 TACGAAATTGGGGATAAAAGAATCTCCAATCAAGATCAACAGCCAGACTAAGTATGCAGC 914
||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 833 TACGAAACTGGGGATAAAAGAATCGCCAATCAAGATCAACAGTCAGACAAAGTATGCAGC 892
Query 915 TTTATCTAGAGGAGATGGAGAGGTTTACTTGAGGTTTACTCGCAAAGCAAGACCCGAATC 974
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 893 TTTATCTAGAGGAGATGGAGAGGTGTACTTGAGGTTTACTCGCAAAGCAAGACCCGAATC 952
Query 975 AATATGGAATCACGCTGCTGGCTCAATCATTGTTTCAGAAGCAGGAGGGAAAGTGACTGA 1034
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 953 AATATGGAATCACGCTGCTGGCTCAATCATCGTTTCAGAAGCGGGAGGGAAAGTGACTGA 1012
Query 1035 TGCAGCAGGGAATCCATTGGACTTTTCGAAAGGGAAGTATCTTGATTACAAGAGAGGAAT 1094
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGCAGCAGGGAATCCGTTGGACTTTTCGAAAGGGAAGTATCTTGATTACAAGAGAGGAAT 1072
Query 1095 CGTCGTTACGACGCAGAAACTGTTGCCAAGGCTTTTAACAGCAGTAAGAGAATCAATTaa 1154
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1073 TGTGGTTACGACGCAGAAACTGTTGCCAAGGCTTTTGATAGCAGTAAGAGAATCAATTAA 1132
Query 1155 agaagaagaagaggaagaagaaaaagCTGCTTCTCTAAAACTTCACTAACACGCAACTGT 1214
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1133 AGAAGAAGAAGAGGAAGAAGAAAAAGCAGCTTCTCTGAAACTTCACTAACACGCAACTGT 1192
Query 1215 AATATACTTATTATTGTTGTCTTTGGGTATACTCTGTTGTCTCTGTGTTTTTCACA--GT 1272
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1193 AATATACTTATTATTGTTGTCTTTGGGTATACTCTGTTGTCT--GTGTTTTTCACACAGT 1250
Query 1273 CTATTTATTGAAAACCAGAAACaaaaaaaaaa----CTCACCTTTGATATATATA-A-GA 1326
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1251 CTATTTATTGAAAACCAGAAACAAAAAAAAAAAATACTCACCTTTGATATATATATAAGA 1310
Query 1327 AA-CACTAATTCTCTTTT 1343
|| |||||||||||||||
Sbjct 1311 AAACACTAATTCTCTTTT 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5