BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64000.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496594 jgi|Araly1|496594|fgenesh2_kg.8__2410__AT5G64000.1 1901 0.0
Ahg487739 jgi|Araly1|487739|fgenesh2_kg.6__873__AT5G09290.1 374 1e-102
> Ahg496594 jgi|Araly1|496594|fgenesh2_kg.8__2410__AT5G64000.1
Length=1209
Score = 1901 bits (1029), Expect = 0.0
Identities = 1150/1210 (95%), Gaps = 2/1210 (0%)
Strand=Plus/Plus
Query 14 TTGAAGCTTTTCAATGTCTTATGAGAAGGAGCTAGCCGCTGCAAAGAAAGCCGTCACTCT 73
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1 TTGAAGCTTTTCAATGTCTTATGAGAAGGAGCTAGCCGCTGCAAAGAAAGCTGTCTCTCT 60
Query 74 AGCTGCTCGTCTCAGCCAGGAAGTGCAGAAGACTCTTTTGCAATCCCAAGTTTGGAAAAA 133
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 61 AGCTGCTCGTCTCAGCCAGGAAGTTCAGAAGACTCTGTTGCAATCCCAAGTATGGAAAAA 120
Query 134 ATCCGATAGAAGTCCGGTTACTGCAGCTGATTACGGCTCACAAGCTGTGGTTAGTCTTGT 193
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ATCCGATAGAAGTCCAGTTACTGCAGCTGATTACGGCTCACAAGCTGTAGTTAGTCTTGT 180
Query 194 ATTGGAGAGGGAGCTCCAACCTGATAAACTGTCATTAGTAGCTGAAGAGGAAACTGGAGA 253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATTGGAGAGGGAGCTCCAACCTGATAAACTGTCATTAGTAGCCGAAGAGGAAACTGGAGA 240
Query 254 TCTGCGGAAGAATGGAAGTGAGGCGTTTCTAGAAGATATTGCAA-AGCTTGTGAAAGATA 312
||||||||| || ||||||||| ||||||| ||| |||| ||| | |||||||||||||
Sbjct 241 TCTGCGGAAAAAGGGAAGTGAGTTGTTTCTACAAGGTATTACAACA-CTTGTGAAAGATA 299
Query 313 CTCTAGCCTCTGAGGAATCGTACACCAGCTCTCCTCTATCCACAGATGATGTGTTAAATG 372
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 CTCTAGCTTCTGAGGAATCGTACACCGGCTCTCCTCTATCCACAGATGATGTGTTAAATG 359
Query 373 CTATAGACTGCGGTAAATCAGAAGGCGGTTGCAAAGGTTCCCACTGGGTTCTTGATCCTA 432
||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct 360 CTATAGACTGCGGTAAATCAGAAGGCGGTAGCAGCGGTTCCCACTGGGTTCTTGACCCTA 419
Query 433 TAGATGGAACCAGAGGATTTGTAAGAGGAGAGCAATACGCGGTGGGGTTAGCCTTGCTTG 492
||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||
Sbjct 420 TAGATGGAACCAGAGGATTTGTAAGAGGAGAGCAATATGCTGTGGGACTAGCGTTGCTTG 479
Query 493 TGGAAGGCAAAGTGGTGCTTGGTGTCATGGCTTGCCCAAATCTTCCTTTGGCTTCTGCGG 552
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 480 TGGAAGGCAAAGTGGTGCTTGGTGTCATGGCTTGCCCGAATCTTCCTTTGGCTTCAGCGA 539
Query 553 TTTGCGCGACTGATAATTCTTCCCAGGAAGATGTTGGCTGTCTTTTCTTTGCTACAACGG 612
|||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TTTGCGTGACGGATAAGTCTTCCCAGGAAGGTGTTGGCTGTCTTTTCTTTGCTACAACGG 599
Query 613 GTTCAGGGACTTACGTGCAATCGCTCAAAGGCAATTCTCTGCCACAAAAGGTGCAAGTGA 672
||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||| |||||
Sbjct 600 GTTCAGGAACTTATGTGCAATCACTCAAAGGCAATTCTCTACCACAGAAGGTGCGAGTGA 659
Query 673 GTAGCAATGAGAATCTTGATGAAGCGAAGTTCTTAGAATCATACCACAAACCAATTCCCA 732
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 660 GTAGCAATGAGAATCTTGACGAAGCGAAGTTCTTAGAATCATACCATAAACCAATTCCCA 719
Query 733 TCCATGGTACCATTGCCAAGAAACTCGGGATTAAAGCATTACCTGTAAGGATCGATAGCC 792
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 TCCATGGTACCATTGCCAAGAAACTCGGGATTAAAGCATTACCTGTAAGGCTCGATAGCC 779
Query 793 AAGCTAAGTATGCGGCTTTGTCGCGAGGAGACGCAGAGATATACTTGCGTTTCACTCTCA 852
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 AAGCTAAGTATGCGGCTTTGTCGCGGGGAGACGCAGAGATATACTTGCGTTTCACTCTCA 839
Query 853 ATGGATACCGTGAGTGTATTTGGGACCATGCACCTGGTTCAATAATCACTACAGAAGCTG 912
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 840 GTGGATACCGTGAGTGTATTTGGGACCATGCTGCAGGTTCAATAATCACTACAGAAGCTG 899
Query 913 GAGGCGTAGTGTGTGATGCTACAGGGAAATCTCTGGACTTCTCGAAAGGAAAGTATCTTG 972
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 900 GAGGTGTAGTGTGCGATGCTACAGGGAAATCTCTGGACTTCTCGAAGGGAAAGTATCTTG 959
Query 973 CTCACAAAACGGGGATCATAGTTACCACCAAGAAACTCAAGCCATGGATATTGAAGGCAG 1032
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 CTCACAAAACGGGGATCATAGTTACCACCAAGAAACTCAAGCCATGGATTTTGAAGGCAG 1019
Query 1033 TCAGAGAATCCATAGAAGAAGAGAATCTTTATTTCTGAGGCACAACAGAAACTGTACAAT 1092
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 TCAGAGAATCCATTGAAGAAGAGAATCTTTATTTCTGAGGCACAACAGAATCTGTACAAT 1079
Query 1093 ACAGTATTTGTATTTGTCTGAACTAGTAATTGGTGTATATTCTTAGTTCATATATCGTAT 1152
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1080 ACAGTATTTGTATTTGTCCGAACTAGTAACTGGTGTATATTCTTAGTTCATATATTGTAT 1139
Query 1153 ACATCAGATATGAAAGATATTTTTGCTTAGATAATGAATAATGATACTAAGGAAGATTCG 1212
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1140 ACATCAGATATGAAAGATATTTGTGCTTAGATAATGAATAATGATACTAAGGAGGATTCG 1199
Query 1213 ATTTTACTTC 1222
||||||||||
Sbjct 1200 ATTTTACTTC 1209
> Ahg487739 jgi|Araly1|487739|fgenesh2_kg.6__873__AT5G09290.1
Length=1156
Score = 374 bits (202), Expect = 1e-102
Identities = 413/511 (81%), Gaps = 30/511 (6%)
Strand=Plus/Plus
Query 594 CTTTTCTTTGCTACAACGGGTTCA-G-GGA-CTTACGTGCAATCGCTCAAAGGCA-A-T- 647
||||||||||||||| ||| | | ||| |||||||||||||||| |||| | | |
Sbjct 548 CTTTTCTTTGCTACAGTGGG---AGGTGGAGCTTACGTGCAATCGCTTGAAGG-AGACTC 603
Query 648 TC-T-CTGCCACAAAAGGTGCAAGTGAGTAGCAATGAGAATCTTGATGAAGCGAA-GTTC 704
|| | || ||||| |||||||||||||| | || |||||||| ||| ||||| || ||
Sbjct 604 TCATCCT-CCACAGAAGGTGCAAGTGAGCAACATTGAGAATCCTGAAGAAGC-AACCTT- 660
Query 705 T-TAGAATCATACCACAAACCAATTCCCATCCAT-GGTACCATTGCCAAGAAACTCGGGA 762
| | ||||||| |||||||||||| ||||||||| | | |||||||||| ||||| ||||
Sbjct 661 TGTCGAATCATCCCACAAACCAATCCCCATCCATAGCT-CCATTGCCAATAAACTTGGGA 719
Query 763 TTAAAGCAT-TACCTGTAAGGATCGATAGCCAAGCT-AAGTATGCGGCT-TTGTCGCGAG 819
| ||||| | |||| |||| ||| |||| |||| | ||||| || ||| | | | ||||
Sbjct 720 TCAAAGC-TCCACCTCTAAGAATCCATAGTCAAG-TGAAGTACGCTGCTCTAG-CTCGAG 776
Query 820 GAGACGCAGAGATATACTTGCGTTTCACTCTCAATGGATACCGTGAGTGTATTTGGGACC 879
|||| ||||||||||||||||||||||||||||| || |||||||||| || ||| |||
Sbjct 777 GAGATGCAGAGATATACTTGCGTTTCACTCTCAAAGGGTACCGTGAGTCCATATGGAACC 836
Query 880 ATGCACCTGGTTCAATAATCACTACAGAAGCTGGAGGCGTAGTGTGTGATGCT-ACAGGG 938
|||| ||||| |||| ||||| |||||||||||||| ||||| || |||||| | |||
Sbjct 837 ATGCTGCTGGTGCAATCATCACCACAGAAGCTGGAGGTGTAGTTTGCGATGCTGAT-GGG 895
Query 939 AAATC-TCTGGACTTCTCGAAAGGAAAGTATCTTGCTCACAAAACGGGGATCATAGTTAC 997
|| || |||||||||||||| ||||||| |||||| ||||| || |||||| | || |
Sbjct 896 AA-TCCTCTGGACTTCTCGAGAGGAAAGCATCTTGAACACAATACAGGGATCGTGGTCAG 954
Query 998 CACCAAGAAACTCAAGCCATGGATATTGAAGGCAGTCAGAGAATCCATAGAAGAAGAGAA 1057
|||| |||| |||| |||| |||| |||||||| |||||||||||||| ||||| || ||
Sbjct 955 CACCCAGAAGCTCATGCCACGGATCTTGAAGGCCGTCAGAGAATCCATGGAAGAGGAAAA 1014
Query 1058 TCTTTATTTCTGAGGCACAACAGAAACTGTA 1088
||| | |||||| | |||| |||||||||
Sbjct 1015 GCTTC-TCTCTGAGACGCAACTGAAACTGTA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5