BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64010.1
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496595 jgi|Araly1|496595|fgenesh2_kg.8__2411__AT5G64010.1 1373 0.0
> Ahg496595 jgi|Araly1|496595|fgenesh2_kg.8__2411__AT5G64010.1
Length=914
Score = 1373 bits (743), Expect = 0.0
Identities = 868/925 (94%), Gaps = 21/925 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAGTTTCGAGAAATTCGAACCCATATTTGGAGAAGTCGTACCCGAACGTTCGGAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTTTCGAGAAATTCGAACCCATATTTGGCGAAGTCGTACCCGAACGTTCGGAT 60
Query 61 CCGGGTTCGGGTCTACTCCGGCGATGTCTCTTCCACGTCTACGCTTCCGATTCGTATAAC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGGGTTCGGGTCTTCTCCGGCGATGTCTCTTCCACGTCTACGCTTCCGATTCGTATAAC 120
Query 121 TTAACAGTTCATGTCACTGACTTCATCTCCGGTGTCTGGACGACGATCCTCTCCGTCTCG 180
|||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 121 TTAACAGTCCATGTCACTGACTTCGTCTCCGGCGTCTGGGCGACGATCCTCTCCGTCTCG 180
Query 181 CAGCTAGACGATATGAGGGATACTGTTGGGATTGGTGGTTCGTGGTCTGAGTTCGTCGAT 240
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 181 CAGCTAGACGATATGAGGGATACTGTGGGGATTGGTGGTTCGTGGTCAGAGTTCCTCGAT 240
Query 241 TATACTGTTGCTTCCTTGAAATCCGACAATGTGAAGCTTCTCTTGGGAGA-AACTTCAGT 299
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 TATACTGTTGCTTCCTTGAAATCCGACAATGTGAAGCTTCTCTTGGGAGATAA-TTCAGT 299
Query 300 TTCAAATGGTGTCAAAACTGCGCGATTAGTTTCTCAGAAAGCCAAAGGAATGCCTCGCAT 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TTCAAATGGTGTCAAAACTGCGCGATTAGTTTCTCAGAAGGCCAAAGGAATGCCTCGCAT 359
Query 360 AA-ATGTTCCTTTAACAAAGATGGTGGAATCATCTGCTAGTGAAGCAATGGCAAATCTGT 418
|| | |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 AATA-GTTCCTCTAACAATGATGGTGGACTCATCTGCTAGTGAAGCAATGGCAAATCTGT 418
Query 419 CTCTCGAGTTGTTCAGAGCATTCAAGAGCAAGCAGCACCTACAAGGAGAAGTGAGTTTTT 478
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 CTCTTGAGTTGTTCAGAGCATTCAAGAGCAAGCAGCACCTACAAGGAGAAGTGAGTTCTT 478
Query 479 CAGCTGCAGCAACTGATGAAAAGGATAAGAGGGATGCTACCTATAACCAACTGGAACGAT 538
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 479 CAGCTGCAGCAACTGATGAAAAGGATAAGAGGGATGCTACCCATAACCAAGTGGAACGAT 538
Query 539 ACTCTAGAAAGCTAGATGTTATGGCTCCATCAACAAATAACCGGCAAGACTCTCCCGCCA 598
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 GCTCTGGAAAGCTAGATGTTATGGCTCCATCAACAGATAACCGGCAAGACTCTCCCGCCA 598
Query 599 ACCAATCTGCCCGAGAAGCTAACACAA-AAAACCCTGTGAAACGAGTACCTGCTCACCGA 657
| |||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||
Sbjct 599 AGCAATCTGCCCGAGAAGGTAACACAACAAAACC-TGTTAAACGTGTACCTGCTCACCGG 657
Query 658 AGAACCCGTAAACGGGGTGCTCTTCTGCAGGATTCAGAAGAAGAGGATGGCTGATTGGAA 717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAACCCGTAAACGGGGTGCCCTTCTGCAGGATTCAGAAGAAGAGGATGGCTGATTGGAA 717
Query 718 CAGCC-----TGAACAAACTGAATCGCCTGGGGAGTTATGCTTTATGCTCATGATAATTT 772
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAGCCGACACTTAACAAACTGAATCGCCTGGGGAGTTATGCTTTATGCTCATGATAATTT 777
Query 773 CCCAGGTCCTTCCttttttttCTCCTCTTTTGGTGATTCGTTTTTGTAAAAAGAATCTGT 832
||||||||||| |||| ||||||||||||| ||||| |||| | ||||||||||||
Sbjct 778 CCCAGGTCCTT--TTTTA---CTCCTCTTTTGGTAATTCGATTTTCTGAAAAGAATCTGT 832
Query 833 AAGGTTAACTTAGATTCCTTGTGGACACATATATTAGAAGTTTTTGAAAGTTGGAAAA-G 891
||||||||| ||||||| ||||||| |||||| | |||||||||||||||||| |||| |
Sbjct 833 AAGGTTAACATAGATTCGTTGTGGAAACATAT-T-AGAAGTTTTTGAAAGTTG-AAAACG 889
Query 892 -AAGTAAAATCGAATCTTCCTTAGT 915
||||||||||||||| ||||||||
Sbjct 890 GAAGTAAAATCGAATCCTCCTTAGT 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5