BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64020.1
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1 2305 0.0
Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1 1075 0.0
> Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1
Length=1528
Score = 2305 bits (1248), Expect = 0.0
Identities = 1408/1483 (95%), Gaps = 20/1483 (1%)
Strand=Plus/Plus
Query 4 AACGTTGAATTTGATGAGTCACTCGTACAATGAATATTGTTTATTGACCAACGAACATGT 63
||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1 AACGTTGAAATTGATGAGTCACTCGTACAATGGAGATTGTTTATTGACCAACGAACATGT 60
Query 64 GAGAGATCCAAATTCGGAGGGGGATTCGTAATTTGCTTGCTCTCCAGATCTACACTTCAC 123
||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 61 GAGAGATCCAAATTCAGAGGTGGATTCCTAA-TTGCTTGCTCTCCAGATCTACACTTCAC 119
Query 124 TATCCTTGCTCGTTGAAGATCC-A---ATCATCATCAATCGTTTCCGGATCTTGAACTTA 179
||| |||||||||||||||||| | ||||||||||||||| |||||||||||||| |
Sbjct 120 TATTCTTGCTCGTTGAAGATCCAATCCATCATCATCAATCGTCTCCGGATCTTGAAC-T- 177
Query 180 ACAACATAGCAAGGAGCTTTCTTTGTTGAGAGAGTTGATGTTATCTCTAAGATGTTTGGT 239
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ------T-------AGCTTTCTTTGTTGAGAGAGTTGATGTTATCTCTAAGATGTTTGGT 224
Query 240 GGAAAAAGTCATATACTCAGAGGGAGTGTATCACTGGCCTTGATCGTCCTTATTCTTTTG 299
||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 225 GGAAAAAGTCACATACTCAGAGGGAGTGTATCACTTGCCTTGATTATCCTCATTCTTTTG 284
Query 300 GTCATTATACTCCTGGTTTCTGAGGAAAACCCGCTTCGTGATTCTCTCTTTGAAGTAAAA 359
|| |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 285 GTGATTATACTCCTGATTTCCGAGGAAAACCCGCTTCGTGCTTCTCTCTTTGAAGTAAAA 344
Query 360 CGTCAGTTTTCAtcttcttcttcttcttcttcttcAGTTTGTAACTTTGCAAAGGGAAAA 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 345 CGTCAGTTTTCATCTTCTTCTTCTTCATCTTCTTCAGTTTGTAACTTTGCAAAGGGAAAA 404
Query 420 TGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTTGAATGTAAACAATGGTTATCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTTGAATGTAAACAATGGTTATCA 464
Query 480 TCCATGTGGTCATGTAGAATAATGGGCAGACCCGATTTCTCATTTGAGGGTTACCGTTGG 539
| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 465 ACAATGTGGTCATGTAGAATAATGGGCAGACCCGATTTCTCATTTGAGGGTTATCGGTGG 524
Query 540 CAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGATTCACTTTCTTGACAAGAATGCAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGATTCACTTTCTTGACAAGAATGCAG 584
Query 600 AACAAGACGATAGCATTTATAGGAGACTCATTGGGGCGGCAACAGTTTCAATCCCTAATG 659
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 585 AACAAGACGATAGCATTTATAGGAGACTCACTGGGACGGCAACAGTTTCAATCCCTGATG 644
Query 660 TGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGGTTCAAAACGTGGGATGGGAGTACGGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGGTTCAAAACGTGGGATGGGAGTACGGT 704
Query 720 TTGGTGAAAGCCAAAGGAGCTCTCCGTCCTGATGGTTGGGCTTATCGGTTCCCAACCACA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CTGGTGAAAGCCAAAGGAGCTCTCCGTCCTGATGGTTGGGCTTATCGGTTCCCAACCACA 764
Query 780 AACACGACGATCTTGTATTATTGGTCAGCTAGCTTATCAGATTTGGTACCCATGAACAAT 839
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 765 AACACAACGATCTTGTATTATTGGTCAGCTAGTTTATCAGATTTGGTACCAATGAACAAC 824
Query 840 ACAGATCCACCTAGTCTTACTGCAATGCATCTAGATCGTCCACCAGCATTCATGAGAAAC 899
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 825 ACAGATCCACCTAGTCTTACTGCAATGCATCTGGACCGTCCACCAGCATTCATGAGAAAC 884
Query 900 TACCTTCACCGTTTCGATGTATTGGTTCTAAACACTGGTCACCATTGGAACAGAGGTAAG 959
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 885 TACCTTCACCGTTTCGATGTATTGGTTCTGAACACCGGTCACCATTGGAACAGAGGGAAG 944
Query 960 ATTGAAGGAAACCATTGGGTGATGCATGTAAATGGAACACAGGTCGAAGGCGAATATCTC 1019
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 ATCGAAGGAAACCATTGGGTGATGCATGTAAATGGAACACAGGTCGAAGGCGAATATCTC 1004
Query 1020 AAAGATATCAGAAACGCCAAGGATTTTACAATACACAGCGTTGCGAAGTGGCTCGATGCA 1079
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1005 AAAGATATCAGAAACGCAAAGGATTTTACAATACACAGCGTTGTGAAGTGGCTCGATGCA 1064
Query 1080 CAGCTTCCATTGCATCCGCGGTTGAAAGCTTTCTTTAGGACAATTTCTCCGAGGCATTTT 1139
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1065 CAGCTTCCGTTGCATCCGCGGTTGAAAGCTTTCTTCAGGACAATTTCTCCGAGGCATTTT 1124
Query 1140 AAAAACGGAGATTGGAATACAGGTGGAAACTGTAACAACACGGTTCCTTTGTCTAGAGGC 1199
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1125 AAAAACGGAGATTGGAATACTGGTGGAAACTGTAACAACACGGTCCCTTTGTCTAGAGGA 1184
Query 1200 AGCGAAATCACAGGGGATGATGGATCGATCGATGCAACAGTTGAGAGTGCTGTGAACGGG 1259
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1185 AGCGAAATCACAGGCGATGATGGATCGATTGATGCAACAGTCGAGAGTGCTGTGAACGGG 1244
Query 1260 ACAAGGATCAAGATTCTTGACATAACTGCACTTTCTGAGCTAAGAGACGAAGCTCATATC 1319
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1245 ACAAGGATCAAAATTCTTGACATAACTGCACTTTCTGAGCTAAGAGATGAAGCTCATATC 1304
Query 1320 TCAGGGTCTAAACTCAAACCCCGAAAACCGAAGAAGGCAAGTAACGTGACCTCAACTCCA 1379
||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct 1305 TCAGGGTCTAAACTCAAACCCCGCAAACCAAAGAAGGCGAGTAACGTGACTTCAACTCCA 1364
Query 1380 ACGATCAACGATTGCTTGCATTGGTGCTTACCAGGGATCCCAGATACTTGGAATGAACTT 1439
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ACGATCAATGATTGCTTGCATTGGTGCTTACCAGGGATCCCAGATACTTGGAATGAACTT 1424
Query 1440 TTCATTGCTCAGATTTGAAGTATTCAACATCATCACACACACA 1482
|||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1425 TTCATTGCCCAGATTTGAAGTATTCAACATCATAACACACACA 1467
> Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1
Length=1182
Score = 1075 bits (582), Expect = 0.0
Identities = 916/1069 (86%), Gaps = 56/1069 (5%)
Strand=Plus/Plus
Query 399 TGTAACTTTGCAAAGGGAAAATGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTT 458
|||||| | |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 160 TGTAACGTGGCAAAGGGGAAATGGGTTGAAGATAGGAAGCGACCATTGTATTCTGGTTTT 219
Query 459 GAATGTAAACAATGGTTATCATCCATGTGGTCATGTAGAATAATGGGCAGACCCGATTTC 518
||||||||||||||| ||||| |||| | || || || ||||||||||||||||||||
Sbjct 220 GAATGTAAACAATGGCTATCAACCATATTTTCCTGCAGGGTAATGGGCAGACCCGATTTC 279
Query 519 TCATTTGAGGGTTACCGTTGGCAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGATTC 578
|||||||||| |||| | ||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 280 TCATTTGAGGCTTACGGGTGGCAGCCAGAAGGTTGCAACATTCCAGAGTTTGACAGAGTC 339
Query 579 -ACTTTCTTGACAAGAATGCAGAACAAGACGATAGCATTTATAGGAGACTCATTGGGGCG 637
|| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 340 AAC-TTCTTGAGAAGAATGCAGAACAAGACGATAGCATTTATAGGAGACTCCTTGGGACG 398
Query 638 GCAACAGTTTCAATCCCTAATGTGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGGTTCA 697
|||||||||||||||||| ||||||||||||| ||| ||| |||| || |||||||||||
Sbjct 399 GCAACAGTTTCAATCCCTGATGTGTATGGCCACTGGAGGTAAAGAGAGGCCAGAGGTTCA 458
Query 698 AAACGTGGGATGGGAGTACGGTTTGGTGAAAGCC-AAAGGAGCTC-TCCGTCCTGATGGT 755
|||||||||||||||||||||| |||||||| || |||||||||| || |||||||||||
Sbjct 459 AAACGTGGGATGGGAGTACGGTCTGGTGAAA-CCTAAAGGAGCTCCTC-GTCCTGATGGT 516
Query 756 TGGGCTTATCGGTTCCCAACCACAAACACGACGATCTTGTATTATTGGTCAG-CTAGCTT 814
||||||||| ||||||| ||||||||||| ||||| |||| ||||||||| | ||| |||
Sbjct 517 TGGGCTTATAGGTTCCCGACCACAAACACAACGATTTTGTTTTATTGGTC-GTCTA-CTT 574
Query 815 -ATCAGATTTGGTACCCATGAACAATACAGATCCACCTAGTCTTACTGCAATGCATCTAG 873
| ||||||||||||| |||||||| ||| |||||||| |||||||||||||||||| |
Sbjct 575 TAACAGATTTGGTACCGATGAACAACACAAATCCACCTCCTCTTACTGCAATGCATCTGG 634
Query 874 ATCGTCCACCAGCATTCATGAGAAACTACCTTCACCGTTTCGATGTATTGGTTCTAAACA 933
| || |||||||||||||| | ||||||||||||||||||| |||||||| |||||||||
Sbjct 635 ACCGACCACCAGCATTCATAAAAAACTACCTTCACCGTTTCCATGTATTGATTCTAAACA 694
Query 934 CTGGTCACCATTGGAACAGAGGTAAGATTGAAGGAA-ACCATTGGGTGATGCATGTAAAT 992
| ||||||||||||| ||||||| |||| |||| || | |||||||||||||| ||||||
Sbjct 695 CCGGTCACCATTGGAGCAGAGGTGAGATCGAAG-AACATCATTGGGTGATGCACGTAAAT 753
Query 993 GGAACACAGGT-CGAAGGCGAATATCTCAAAGATATCAGAAACGCCAAGGATTTTACAAT 1051
||||||| ||| | |||||| ||||||||| || || ||||||| || |||||||||||
Sbjct 754 GGAACACGGGTTC-AAGGCGGATATCTCAAGGAGGTCGGAAACGCTAAAGATTTTACAAT 812
Query 1052 ACACAG-CGTTGCGAAGTGGCTCGATGCACAGCTTCCATTGCATCCGCGGTTGAAAGCTT 1110
|||||| | | | ||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 813 ACACAGAC-TCGTGAAGTGGCTCGATGCGCAAATTCCGTTGCATCCGCGGTTGAAAGCTT 871
Query 1111 TCTTTAGGACAATTTCTCCGAGGCATTTTAAAAACGGAGATTGGAATACAGGTGGAAACT 1170
|||||| ||| ||||| || || | || || |||| | | || || |
Sbjct 872 TCTTTACGACGATTTC-CC----CA----A-----GGC-AT-GGAA-A--G-TGTAA--T 909
Query 1171 GTAACAACACGGTTCCTTTGTCTAGAGGCAGCGAAATCACAGGGGATGATGGATCGATCG 1230
|| | | ||| |||||||||||||| ||| |||| ||||| ||| |||||| || |
Sbjct 910 --AATA-C--GGTCCCTTTGTCTAGAGGAAGCAAAATAACAGGCCATGGTGGATCTATGG 964
Query 1231 ATGCAACAGTTGAGAGTGCTGTGAACGGGACAA-GGATCAAGATTCTTGACATAACTGCA 1289
|| ||| ||| |||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 965 ATACAATAGTCGAGAGTGCTGTGAATGGGACAAAGG-TCAAGATTCTTGACATAACTGCA 1023
Query 1290 CTTTCTGAGCTAAGAGACGAAGCTCATATCT-CAGGGTCTAAACTCAAACCCCGAAAACC 1348
||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||
Sbjct 1024 CTTTCTGAGCTAAGAGATGAAGCTCATAT-TGCAGGGTCTAAACTCAAACC--GAAAA-- 1078
Query 1349 GAAGAAGGCAAGTAACGTGACCTCAACTCCAACGATCAACGATTGCTTGCATTGGTGCTT 1408
| | | | ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1079 -A-G--G-CGAGTAACGTGACTTCTACTCCAACGATCAACGATTGCTTGCATTGGTGCTT 1133
Query 1409 ACCAGGGATCCCAGATACTTGGAATGAACTTTTCATTGCTCAGATTTGA 1457
||| |||||||| |||||||||||||||||| |||| || ||| |||||
Sbjct 1134 ACCCGGGATCCCGGATACTTGGAATGAACTTCTCATAGCCCAGCTTTGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63115535965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5