BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64030.1
Length=3115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496597 jgi|Araly1|496597|fgenesh2_kg.8__2413__AT5G64030.1 4473 0.0
> Ahg496597 jgi|Araly1|496597|fgenesh2_kg.8__2413__AT5G64030.1
Length=3007
Score = 4473 bits (2422), Expect = 0.0
Identities = 2809/2987 (94%), Gaps = 62/2987 (2%)
Strand=Plus/Plus
Query 130 TATATATACACCTTTCTC--TCCCGCATCTTCAACATATAT-CCAGTGCCATTGCAATTT 186
|||||||||||||||||| |||| |||||||||||||||| ||| |||| || |||||
Sbjct 53 TATATATACACCTTTCTCTTTCCC-CATCTTCAACATATATCCCA-CGCCACTGGAATTT 110
Query 187 TCTCGAGAAAGTGACGGAAAATGGCTCCGCAGCTGCAAAATTGAGATTCGGATTCTCCCT 246
||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||
Sbjct 111 TCTCGAGAAAGTGACGGAAAATGGCTCCGTAGCTGGGAAATTGAAATTCGGATTCCCCCT 170
Query 247 TCTTTCGTCACTCTCATTCATTCTCGCCTGTATCAGGCGTACACGCGTTGTTATCATCTG 306
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCTTTCG-CACTCTCATTGATTCTCGCCTGTATCAGGCGTACACGCGTTGTTATCATCTG 229
Query 307 TTGCTTATATTTGAACCATGGCGCAACCAAGGTACACTAGGATAGATAACAGGAGGCCCT 366
||||| | || |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TTGCTCAAATCTGAATCAAGGCGCAACCAAGGTACACTAGGATAGATAACAGGAGGCCCT 289
Query 367 CATCAAATTATTGCTCTACAGTGACAGTAGTTGTGTTT-GTGGCCCTATGCTTAGTCGGG 425
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 290 CATCAAATTATTGCTCTACAGTGACAGTAGTTGT-TTTCGTGGCCCTATGCTTAGTCGGG 348
Query 426 ATCTGGATGATGACATCATCTTCTGTTGGACCGGCTCAGAATGTTGATGAGGTTTCTCTG 485
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 349 ATCTGGATGATGACATCATCTTCTGTTGGACCCGCTCAGAATGTTGATGAGGTTTCTCTG 408
Query 486 GACAACAAAGATGGGATAAAGAAACAGATGACCCCACCTGCAGAGGAGGGTAATGGTCAG 545
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 409 GACAACAAAGATGGGATAAAGAAACAGATGACCCCACCTGCAGAGGAGGGCAATGGTCAG 468
Query 546 AAGTTTGAAGACGCACCTGTTGAAACACCGAACGAGGATAAAAAAGGAGATGGTGATGCA 605
||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 469 AAGTTTGAAGACGCATCTGGTGATACACCAAACGAGGATAAAAAAGGAGATGGTGATGCA 528
Query 606 AGCTTGCCCAAAGAGGATGAGAGCTCAAGCAAACAAGATAACCAGgaagagaagaaagaa 665
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 AGCTTGCCCAAAGAGGATGAGAGCTCAAGCAAACAAGACAACCAGGAAGAGAAGAAAGAA 588
Query 666 gagaaaa-ctaaagaagaGTTTACTCCATCCAGTGAGACGAAAAGTGAGACCGAAGGTGG 724
|| |||| | |||||||||| |||||||||| ||||||| || |||||||||||||||
Sbjct 589 GA-AAAACCAAAAGAAGAGTCTACTCCATCCGGTGAGAC---AATTGAGACCGAAGGTGG 644
Query 725 GGAAGATCAAAAAGATGACTCCAAGTCAGAAAATGGTGGTGGAGGTGATTTAGATGAGAA 784
||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 645 GGAAGATAAAAAAGATGACTCCAAGTCAGAAAATGGTGGCGGAGGTGATTCAGATGAGAA 704
Query 785 AAAAGATTTGAAAGACAACTCAGATGAAGAAAATCCTGACACAAATGAAAAGCAAACTAA 844
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 705 AAAAGATTTGAAAGACAACCCAGATGAAGAAAATCCTGACACAAATGAAAAACAAACTAA 764
Query 845 ACCAGAAACAGAGGACAATGAGTTGGGTGAGGATGGTGAAAACCAAAAGCAATTTGAGTC 904
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 765 ACCCGAAACAGAGGACAATGAGTCGGGTGAGGATGGTGAAAACCAAAAGCAATTTGAGTC 824
Query 905 TGATAACGGTGAGaaaaaatccattgatgatgataaaaaatccagtgatgatgataaaga 964
|| | | || || | ||| | |||||||||||||| |||||||||||
Sbjct 825 TG---A---T-------AA--CA--G-TGA-G--AAAAAATCCAGTGACGATGATAAAGA 863
Query 965 aaaCAAGACAGGCAACGAAGATACTGAAACCAAGACTGAGAAGGAAAACACTGAGACAAA 1024
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AACCAAAACAGGCAACGAAGATACTGAAACCAAGACTGAGAAGGAAAACACTGAGACAAA 923
Query 1025 TGTGGATGTTCAAGTAGAGCAAGAGGGTCAATCC-AAAAACGAGACCTCAGGTGATCTTT 1083
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 924 TGTGGATGTTCAAGTAGAGCAAGAGGGTCAA-CCTAAAAACGAGACCTCAGGTGATCTTT 982
Query 1084 CACCTCCTGGGGCACAATTAGAGCTACTGAATGAAACTACCGCACAGAATGGTTCATTTT 1143
|||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 983 CACCTCCTGGGGCACAGTTAGAGCTTCTGAATGAAACTACAGCACAAAATGGTTCATTTT 1042
Query 1144 CAACCCAGGCAACAGAGTCCAAAAATGAGAAAGAAGCTCAGAAGGGTTCTGGTGATAAAC 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1043 CAACCCAGGCAACAGAGTCCAAAAATGAGAAAGAAGCTCAGAAGGGTTCTGGGGATAAAC 1102
Query 1204 TTGATTACAAATGGGCACTATGCAATACAACAGCAGGACCTGATTACATTCCCTGTCTCG 1263
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1103 TTGATTACAAATGGGCACTATGCAATACAACAGCCGGACCTGATTACATTCCCTGTCTCG 1162
Query 1264 ATAATGTGCAAGCCATTAGGAGTCTTCCGAGTACTAAACATTACGAGCATCGTGAGAGGC 1323
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1163 ATAATGTGCAAGCCATTAAAAGTCTTCCAAGTACTAAACATTACGAGCATCGTGAGAGGC 1222
Query 1324 ATTGCCCAGACAGCCCACCCACCTGCCTTGTTCCTTTGCCTGATGGATACAAGCGGCCAA 1383
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1223 ATTGCCCAGACAGCCCACCCACCTGCCTTGTTCCTTTGCCTGAAGGATACAAGCAGCCAA 1282
Query 1384 TTGAGTGGCCCAAAAGTC-GAGAAAAGATCTGGTACACCAACGTCCCTCATACCAAGCTT 1442
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TTGAGTGGCCCAAAAG-CAGAGAAAAGATCTGGTACACCAACGTCCCTCATACCAAGCTT 1341
Query 1443 GCTGAGTATAAGGGGCATCAAAATTGGGTTAAAGTTACCGGTGAGTATCTAACTTTTCCT 1502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 GCTGAATATAAGGGGCATCAAAATTGGGTTAAAGTTACCGGTGAGTATCTAACTTTTCCT 1401
Query 1503 GGTGGAGGAACCCAATTCAAGCATGGTGCTCTTCATTACATCGATTTCATACAGGAGTCT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GGTGGAGGAACCCAATTCAAGCATGGTGCTCTTCATTACATCGATTTCATACAGGAGTCT 1461
Query 1563 GTCCCTGCTATTGCATGGGGTAAACGCTCTCGTGTGGTCCTGGATGTTGGATGCGGTGTT 1622
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1462 GTCCCTGCTATTGCATGGGGTAAACGCTCTCGTGTCGTCCTGGATGTTGGATGTGGTGTT 1521
Query 1623 GCAAGCTTTGGAGGTTTCCTCTTTGACAGAGATGTGATCACTATGTCTCTTGCACCTAAA 1682
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1522 GCAAGCTTTGGAGGTTTCCTCTTTGACAGAGATGTGATCACTATGTCCCTCGCACCTAAA 1581
Query 1683 GATGAACATGAAGCTCAGGTGCAATTTGCTCTTGAGAGGGGCATTCCCGCCATTTCTGCA 1742
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1582 GATGAACATGAAGCTCAAGTGCAGTTTGCTCTTGAGAGGGGCATTCCCGCCATCTCTGCA 1641
Query 1743 GTTATGGGCACGACAAGGCTACCTTTCCCTGGCAGAGTTTTTGACATAGTTCATTGTGCT 1802
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1642 GTCATGGGCACTACAAGGCTACCTTTCCCCGGCAGAGTTTTTGACATAGTTCATTGTGCT 1701
Query 1803 CGCTGTAGAGTGCCATGGCACATTGAAGGTGGTAAACTTCTCCTGGAGCTTAACCGTGTA 1862
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1702 CGCTGTAGAGTGCCATGGCACATTGAAGGTGGTAAACTCCTCCTGGAGCTTAACCGTGTA 1761
Query 1863 TTGAGACCCGGTGGGTTCTTTGTGTGGTCTGCTACTCCTGTTTATCAGAAGAAGACCGAA 1922
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 TTGAGACCCGGTGGCTTCTTTGTGTGGTCTGCTACTCCTGTTTATCAGAAGAAGACCGAA 1821
Query 1923 GATGTTGAAATTTGGAAAGCTATGAGTGAACTCATTAAGAAGATGTGTTGGGAACTCGTA 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 GATGTTGAAATTTGGAAAGCTATGAGTGAACTCATTAAGAAGATGTGTTGGGAACTCGTA 1881
Query 1983 TCCATTAACAAGGACACTATCAATGGAGTAGGTGTTGCTACTTACAGAAAGCCAACTTCA 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1882 TCCATTAACAAGGACACTATCAATGGAGTAGGTGTTGCTACTTACAGAAAGCCTACTTCA 1941
Query 2043 AATGAGTGCTACAAAAACAGATCAGAACCGGTGCCTCCAATTTGTGCAGACTCTGATGAT 2102
||||||||||||| || |||||||||||| |||||||||||||| || |||||||||
Sbjct 1942 AATGAGTGCTACACAAGCAGATCAGAACCACAACCTCCAATTTGTGCCGAGTCTGATGAT 2001
Query 2103 CCAAATGCATCTTGGAAAGTGCCGCTTCAAGCATGCATGCACACCGCGCCAGAAGACAAA 2162
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2002 CCCAATGCATCTTGGAAAGTTCCGCTTCAAGCATGCATGCACACTGCGCCAGAAGACAAA 2061
Query 2163 ACGCAACGTGGATCTCAGTGGCCCGAACAATGGCCAGCGAGATTAGAGAAAGCACCGTTC 2222
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2062 ACGCAACGTGGATCTCAGTGGCCCGAGCAATGGCCAGCGAGATTAGAGAAACCACCGTTT 2121
Query 2223 TGGTTATCAAGTTCCCAGACTGGAGTTTACGGAAAAGCAGCACCAGAGGATTTCAGTGCT 2282
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2122 TGGTTATCTAGTTCCCAGACTGGAGTTTACGGAAAAGCAGCACCAGAGGATTTCAGTGCT 2181
Query 2283 GATTATGAGCACTGGAAACGCGTAGTGACCAAATCATACCTTAATGGTTTAGGAATCAAC 2342
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 2182 GATTATGAGCACTGGAACCGTGTAGTGACCAAATCATACCTTAAAGGTTTAGGAATCAAC 2241
Query 2343 TGGGCATCTGTTAGAAATGTGATGGACATGAGAGCCGTTTATGGAGGTTTTGCGGCAGCT 2402
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2242 TGGGCATCTGTTAGAAATGTGATGGACATGAGAGCCGTTTATGGAGGTTTTGCGGCGGCT 2301
Query 2403 CTAAGAGATCTGAAAGTGTGGGTCATGAATGTGGTTCCAATAGATTCACCAGACACACTT 2462
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2302 CTAAAAGAAATGAAAGTGTGGGTCATGAATGTGGTTCCAATAGATTCACCAGACACACTT 2361
Query 2463 GCAATAATCTATGAACGAGGACTCTTTGGTATCTACCACGATTGGTGCGAATCTTTCAGT 2522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2362 GCAATAATCTATGAACGAGGACTCTTTGGTATCTACCACGATTGGTGCGAATCTTTCAGC 2421
Query 2523 ACATACCCGAGATCATATGATCTCCTTCACGCCGACCATCTTTTCTCCAAACTCAAACAA 2582
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2422 ACTTACCCGAGATCATACGATCTACTTCACGCCGACCATCTTTTCTCCAAACTCAAACAA 2481
Query 2583 AGGTGCAATCTAACTGCGGTGATAGCAGAAGTGGATCGTGTTTTGAGACCGGAAGGGAAA 2642
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2482 AGGTGCAATCTAACGGCAGTCATAGCAGAAGTGGATCGTGTTTTGAGACCGGAAGGGAAA 2541
Query 2643 CTGATAGTTCGAGACGATGCGGAAACAATACAGCAAGTGGAAG-GCATGGTGAAAGCGAT 2701
|||||||| || ||||| ||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 2542 CTGATAGTCCGGGACGACGCGGAAACAATACAGGAAGTGGAAGCG-ATGGTGAAAGCGAT 2600
Query 2702 GAAATGGGAAGTTCGAATGACTTATTCTAAGGAAAAAGAAGGTTTGCTCTCTGTTCAAAA 2761
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 GAAATGGGAAGTACGAATGACTTATTCTAAGGAAAAAGAAGGTTTGCTCTCTGTTCAAAA 2660
Query 2762 ATCAATCTGGCGACCCAGTGAAGTGGAAACACTCACTTACGCTATCGGTTGAGAAGACTT 2821
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 ATCATTATGGCGACCCAGTGAAGTGGAAACACTCACTTACGCTATCGGTTGAGAAGACTT 2720
Query 2822 ACTTCAAGTCCCACTCTTTTTTGTA-CGTATAAAA-ACACTCTTATTAACTCCATATCAT 2879
||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||| |
Sbjct 2721 ACTTCAAGTCCCACTCTTTTT-GTAACGTATAAAGGACACTCTTATTAACTCCTTATCTT 2779
Query 2880 CCCtttt-tttGTTGGTTCGTCTTTTAGGAAGTTCtttttttt-t-----AGCTGTTGAG 2932
|||| ||||||||||||| |||||||||| |||||||||| | ||| ||||||
Sbjct 2780 TTTTTTTCTTTGTTGGTTCGTTTTTTAGGAAGATCTTTTTTTTATTCTTTAGCGGTTGAG 2839
Query 2933 TCATTTGTTTGTACTATTCGCACATTTTTGTGTTCTTGAAGGTGAA-GAACTCTATTGAG 2991
||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 2840 TCAATTGTTTGTACTATTCACACATTTTTGTGTTCTTGAAGGTGAAAGAACTCTCTTGAG 2899
Query 2992 GTTCTTTGGTAAAGTTAGATTACAGTGATATGTGTT----ACTCTATGGTTTCTTCTATT 3047
||||||||| ||||||||| ||||||||||||| || ||||| ||||||||||| ||
Sbjct 2900 GTTCTTTGGCAAAGTTAGACTACAGTGATATGTATTTTTTACTCTTTGGTTTCTTCTCTT 2959
Query 3048 TGCTTGCATTGGTGTTAACT-C---C---GTAAAACCAACTGAAACT 3087
| | || ||||||||||||| | | ||||||||||||||||||
Sbjct 2960 TACGTGAATTGGTGTTAACTTCTTACATAGTAAAACCAACTGAAACT 3006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117660766805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5