BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64040.2
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496598 jgi|Araly1|496598|fgenesh2_kg.8__2414__AT5G64040.1 1230 0.0
> Ahg496598 jgi|Araly1|496598|fgenesh2_kg.8__2414__AT5G64040.1
Length=763
Score = 1230 bits (666), Expect = 0.0
Identities = 734/765 (96%), Gaps = 12/765 (2%)
Strand=Plus/Plus
Query 99 ATCCTCATTCATCTCTAATACTAAAATCTAATCTCTTCCTTGCTCACTCACCAATCAAAC 158
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATCCTCATTCATCGCTAATACTAAAATCTGATCTCTTCCTTCCTCACTCACCAATCAAAC 60
Query 159 TC-AAAAAACTCTTGAATTTTTCAAGAACAAAAGAAAAAGACATCTTTAATGGCGGCCAT 217
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCAAAAAAACTCTTGAATTTTTCAAGAACAAAAGAAAAAGAGATCTTTAATGGCGGCCAT 120
Query 218 GAACTCGAGTGTTCTCACTTGCAGCTACGCAATTGCTGGCTCTGGCTCGGTAGAGCTTAA 277
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 121 GAACTCGAGTGTTCTCACTTGCAGCTACGCAATTGCTGGTTCTGGCTCAGTAGAGCTAAA 180
Query 278 CCAGAAAGTTGGTTTGGTGAATTCATCAGTTGGGTTTGGTCAGAAGAAACAGATGATTAT 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAGAAAGTTGGTTTGGTGAATTCATCAGTTGGGTTTGGTCAGAAGAAACAGATGATTAT 240
Query 338 GCCTGTGATCAAAGCTCAACGCGTTGTTGGTGATGATGTTGATGGATCTAATGGAAGACG 397
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 241 GCCTGTGATCAAAGCTCAACGAGTTGTTGGTGATGATGTTGATGGATCTAATGGAAGAAG 300
Query 398 ATCAGCCATGGTTTTCTTAGCAGCTACACTCTTCTCCACTGCTGCTGTTTCTGCTTCTGC 457
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 ATCAGCCATGGTTTTCTTAGCAGCTACGCTCTTCTCCACTGCTGCTGTTTCTGCTTCTGC 360
Query 458 TAATGCTGGCGTCATTGACGAATACCTCGAGAGGAGCAAAACCAACAAAGAACTTAATGA 517
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TAATGCTGGCGTCATCGATGAATACCTCGAGAGGAGCAAAGCCAACAAAGAACTTAATGA 420
Query 518 TAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGG 577
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTACAATTCGG 480
Query 578 AAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG----T 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGT 540
Query 634 TCCATTTATCTCAGAAGATATTG-CTTTGGAATGCGAAGGCAAGGACAAGTACAAGTGTG 692
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 541 TCCATTTATCTCAGAAGAT-TTGGCTTTGGAATGCGAAGGCAAGGACAAGTACCAGTGTG 599
Query 693 GTTCCAATGTTTTCTGGAAATGGTGAAGAACTTTGTTTGTTTTCATCTATTCTTATATAA 752
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 600 GTTCCAATGTTTTCTGGAAATGGTGAACAACTT-GTTTGTTTTCATCTATTCTTATATAA 658
Query 753 ATCCAACAATGTATCTAT--CTCTCTCT--ATTCATGAAAGTTCTCGCATCCATTTGAAT 808
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 659 ATCCAACAATGTATCTATATCTCTCTCTCTATTCATGAAAGTTCTCGCATCCATTTGAAT 718
Query 809 CTATCAAGCTAAAACTCTATTGAGAGATTAGGATGCATTATTTTG 853
|||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 719 CTATCAAGTTAAAACTCTATTAAGAGATTAGGAAGCATTATTTTG 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5