BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64060.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496601 jgi|Araly1|496601|fgenesh2_kg.8__2417__AT5G64060.1 1788 0.0
> Ahg496601 jgi|Araly1|496601|fgenesh2_kg.8__2417__AT5G64060.1
Length=1394
Score = 1788 bits (968), Expect = 0.0
Identities = 1248/1372 (91%), Gaps = 63/1372 (5%)
Strand=Plus/Plus
Query 266 AAGTTACTTAGTGTAGTGAAAGTTTTCCCCTTGTCTTCCAATGGGGAAAACTAACTTGGC 325
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 46 AAGTTACTTAGTGTAGTGAAAGTTTTCCCCTTCTCTTCCAATGGGGAAAACTAACTTGGC 105
Query 326 ACCTGGTTTTCGGTTTCATCCGACTGATGTTGAACTTGTGAGATACTACTTGAAGAGGAA 385
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 ACCTGGATTTCGGTTTCATCCGACTGATGTTGAACTTGTGAGATACTACTTGAAGAGGAA 165
Query 386 AGTTATGGGAAAAAAGTTCCAAGTTGATGCCATTGCTGAGGTCGACATTTACAAGTTCGA 445
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 166 AGTTATGGGGAAAAAGTTCCAAGTTGATGCCATTGCTGAGATCGACATTTACAAGTTCGA 225
Query 446 ACCTCCTGATTTACCCGACAAATCATGTCTAGGGACTGGAGATCTTAAGTGGTACTTCTT 505
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 226 ACCACCTGATTTACCCGAGAAATCATGTCTAGGGACTGGAGATCTCAAGTGGTACTTCTT 285
Query 506 CTGTCCAAGAGAAAAGAAGTATCCCAAAGGCGGTAAGGCAAACCGCTCTACTGAATGTGG 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CTGTCCAAGAGAAAAGAAGTATCCCAAAGGCGGTAAGGCAAACCGCTCTACTGAATGTGG 345
Query 566 TTACTGGAAGACCACAGGGAGAGACAGAGATGTTTCTTATAATGACGAAGTCACTGGGAA 625
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 346 TTACTGGAAGACCACAGGGAGAGACAGAGATGTTTCTTACAATGACGAAGTCACTGGGAA 405
Query 626 GATAAGAACTCTGATTTATCACTACGGGAAAATACCTCGCGGTGATCGGACTGATTGGGT 685
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 406 GATAAGAACTCTGATTTATCACTACGGGAAAATACCCCGCGGTGATCGGACTGATTGGGT 465
Query 686 CATACATGAATATAGACTTGAAGACAAAGTACTGGCTCAAAAGAATGTTCCTCAGGATAC 745
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 466 CATACATGAATATAGACTTGAAGACAAAGTACTGGCCCAAAAGAATGTTCCTCAGGATAC 525
Query 746 TTATGTGCTTTGCGTTCTCTTTAAGAAAAATGGACTTGGACCAAGACATGGATCTCAATA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTATGTGCTTTGCGTTCTCTTTAAGAAAAATGGACTTGGACCAAGACATGGATCTCAATA 585
Query 806 TGGTGCTCCATTTAAGGAAGAGGATTGGAGTGATAAGGAAGAAG-A-ATA-T---ACTC- 858
||||||||||||||| |||||||||||||||||||||||||| | | ||| | ||||
Sbjct 586 TGGTGCTCCATTTAAAGAAGAGGATTGGAGTGATAAGGAAGAGGAATATACTCAGACTCA 645
Query 859 -A--G-A-ATCAT-CTTGT--AG------------CTGGTCCTAGTAAAGAAACCAGTCT 898
| | | | | ||||| || |||||||||| ||||||||||||||
Sbjct 646 TATTGTAGCTGTTCCTTGTGCAGAAAACAACAATCCTGGTCCTAGCAAAGAAACCAGTCT 705
Query 899 AGCTGCTAAGGCCTCACACTCGTACGCTCCTAAGGATGGTTTGACAGGAGTGATCTCAGA 958
|||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 706 AGCTGCTACGGCCTCACAATCGCACGCTCCTAAGGATTGTTTGACAGGAGTGATCTCAGA 765
Query 959 ATCTTGCGTCTCTGATGTGCCGCCACTAACTGCCACAG---TGCTTCCACCTCTAACAAG 1015
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 766 ATCTTGCGTCTCTGATGTACCGCCACTAACTGCCACAGTACTGCTTCCACCTCTAACAAG 825
Query 1016 TGATGTTATAGCTTACAATCCCTTTTCTTCTTCACCTCTTCTTGAGGTTCCTCAAGTATC 1075
||||||| |||||||||||||| | ||||||||| |||||| |||||||||||| |||||
Sbjct 826 TGATGTTGTAGCTTACAATCCCATGTCTTCTTCAGCTCTTCCTGAGGTTCCTCAGGTATC 885
Query 1076 TCTCGATGGTGGCGAGTTAAATTCGATGCTTGATCTCTTTTCTGTTGACAATGACGACTG 1135
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 886 TCTCGATGATGGCGAGTTAAATTCGTTGCTCGATCTCTTTTCTGTTGACAATGACGACTG 945
Query 1136 TTTACTTTTCGACGATTTCGACTACCATAATGAGGTAAGACAT---CCTGATGGTTTTGT 1192
||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 946 TTTACTTTTCGACGATTTCGACTACCAAAATGAGGTAAGACATGAGCCTGATGTTTTTGT 1005
Query 1193 AAACAAGGAAGCTCCGGTGTTCTTAGGAGATGGCAATTTCAGTGGAATGTTTGACCTGAG 1252
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AAACGAGGAAGCTCCAGTTTTCTTAGGAGATGGCAATTTCAGTGGAATGTTTGACCTGAG 1065
Query 1253 CAATGACCAAG-TCGTAGAGCTACAGGATCTGATACAGTCACCCACTCCTCATCCTCCTT 1311
||| ||| | | |||||||||||||||||||||| ||| || |||| |||| |||||||
Sbjct 1066 CAACGAC-ATGGTCGTAGAGCTACAGGATCTGATCCAGCCAGCCACACCTCCTCCTCCTC 1124
Query 1312 CTCCTCCAGCTCAAGCTAGTATTCCTGATGACTCAAGAAGCAACGGTCAGACTAAGGACG 1371
||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1125 CTCCT---GCTCAAGCCAGTAATCCTGATGACTCAAGAAGCAACGGTCAGACTTAGGACC 1181
Query 1372 ATTAAGTA-T-TT-TGTGCTGACTTATGCTCTTTCTTGCTTTGGTCTGATGCTCCATGGA 1428
|| || | | || |||||||| ||||| |||||||||| ||| ||||| ||||||
Sbjct 1182 ATCAAAAAATATTATGTGCTGATTTATGATCTTTCTTGCATTG-----ATGCTTCATGGA 1236
Query 1429 AACAGAGACCAAACATGTGAAGCTTTAGCCAGAACGTTTCTATTGTTGC-C-ATCTCTGT 1486
||||||||||||||||||||||||| ||| |||| |||| | || | || | ||||||||
Sbjct 1237 AACAGAGACCAAACATGTGAAGCTTCAGCTAGAATGTTTTTCTTCTGGCGCCATCTCTGT 1296
Query 1487 CTGCACGAAAGAAGAGACAAAACCATGAATCAGTAACTTGAAACCGTCCAG-TAGTGGAG 1545
|||||||||||| || ||||||||||||||||||| | | |||||| | ||||||
Sbjct 1297 CTGCACGAAAGA-GA--CAAAACCATGAATCAGTAA----A--C-GTCCAGCT-GTGGAG 1345
Query 1546 CCAGCTTTCTATGTTATGTTTCTGCAACTGCGTTGTCTGTAGTCTTAGATTT 1597
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1346 CCAGCTTTCTATGTTATGTTTCTGCAACT---TTGTCTGTAGTCTTAGATTT 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5