BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64080.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496603 jgi|Araly1|496603|fgenesh2_kg.8__2419__AT5G64080.1 1125 0.0
> Ahg496603 jgi|Araly1|496603|fgenesh2_kg.8__2419__AT5G64080.1
Length=823
Score = 1125 bits (609), Expect = 0.0
Identities = 762/834 (91%), Gaps = 17/834 (2%)
Strand=Plus/Plus
Query 31 ctctctactctctcctca-aaaactcaaaagagcaaaaaaaaGAGAAGAAGAATCAAAAT 89
|||||||||||||||||| ||| ||||||| | | |||| |||||||||||||||||||
Sbjct 1 CTCTCTACTCTCTCCTCAGAAACCTCAAAA-A-CTCAAAAGAGAGAAGAAGAATCAAAAT 58
Query 90 CCCACACAATGGCAACACACTCTTCCTTCACCGCAACAACACCTCTCTTTCTCATCGTTC 149
|||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 59 CCCACACAATGGCAACACTCTCTTCTTTCACCGCAACAACACCTCTCCTTCTCATCGTTC 118
Query 150 TTCTATCCCTATCCTCCGTCTCAGTTCTCGGCGCATCTCACCACCACGCAACGGCGCCGG 209
||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 119 TTCTATCTCTCTCCTCCGTCTCAGTTCTCGGCGCATCTCACCGCCACGCGGCGGCGCCGG 178
Query 210 CTCCGTCTGTAGACTGTTCGACTCTCATACTCAACATGGCTGACTGTTTATCCTTCGTTT 269
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 179 CTCCGTCTGTAGACTGTTCGACTCTCATTCTCAACATGGCTGACTGTTTGTCCTTTGTTT 238
Query 270 CGAGCGGAGGCACGGTGGCGAAACCGGAAGGTACATGTTGCTCTGGTCTTAAGACGGTGC 329
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 239 CTAGCGGAGGCACGGTGGCGAAACCGGAAGGTACTTGTTGTTCTGGTCTTAAGACGGTGC 298
Query 330 TTAAAGCTGACTCTCAGTGTCTATGTGAAGCGTTTAAGAGCAGTGCTTCTCTTGGAGTTA 389
||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 TTAAAACTGACGCTGAGTGTCTCTGTGAAGCGTTTAAGAGCAGTGCTTCTCTTGGAGTTA 358
Query 390 CTTTGAATATCACTAAGGCTTCTACTCTTCCCGCCGCATGCAAGCTTCACGCTCCTTCTA 449
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTTGAATATCACCAAGGCTTCTACTCTTCCCGCCGCATGCAAGCTTCACGCTCCTTCTA 418
Query 450 TCGCTA-CTTGTGGATTGTCTGTTGCTCCAAGTACTGCTCCAGGTCTTGCTCCAGGAGTA 508
|||||| || |||||||||||||||||||||||||||| |||| | || ||||||||| |
Sbjct 419 TCGCTAACT-GTGGATTGTCTGTTGCTCCAAGTACTGCACCAGATATTTCTCCAGGAGGA 477
Query 509 GCTGCTGCTGGACCTGAGACAGCCGGATTTCTAGCTCCAAATCCTTCTTCAGGGAACGAT 568
||||||||||||||||| ||||||||| |||||||||| || || ||| |||||||||||
Sbjct 478 GCTGCTGCTGGACCTGAAACAGCCGGAGTTCTAGCTCCTAACCCATCTCCAGGGAACGAT 537
Query 569 GGATCTTCTTTGATTCCGACCTCGTTCACAAC-TGTACTCAGTGCCGTACTGTTCGTTTT 627
||||||||||||||||||| |||| ||||||| | || |||| |||||| ||||||||||
Sbjct 538 GGATCTTCTTTGATTCCGATCTCGATCACAACCT-TATTCAGCGCCGTATTGTTCGTTTT 596
Query 628 GTTCTTCTCTAGTGCGTaaaaaaaaaCCTGAATCTTTTTTCACCAGCTAGATTTGGCTGT 687
||||| |||||| | |||| ||||| |||||| ||||||||||||||||||||||||| |
Sbjct 597 GTTCTCCTCTAGAGTGTAATAAAAA-CCTGAACCTTTTTTCACCAGCTAGATTTGGCTTT 655
Query 688 ATGAAATTGATTAATGGTTTTTATTAGGGTTAA-TCTATGTATGTTTTGGAGTGTTCTGT 746
||||||||| || | |||||||||||| ||||| ||| ||| |||||||||||||||||
Sbjct 656 ATGAAATTGGTTTA-GGTTTTTATTAGAGTTAAATCTGTGT--GTTTTGGAGTGTTCTGT 712
Query 747 TTTTAGACCATATCGGTTTCTCTATTAC--TAGCGTTTACTCTTTTAGTTTATGTTATTA 804
||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 713 TTTGAGACCATATCGGTTTCTCTATTACAGTAGCTTTTACTCTTTTAGTTTATGTTATTA 772
Query 805 CTTTGTCTCACAACATTGGTCCTTTTATTCGATCTATCGCTTATTCCTTCATCT 858
|||||| || || ||||||||||||| |||||| ||||||||||||||| |||
Sbjct 773 CTTTGTGTCGCA-CATTGGTCCTTTTGTTCGAT--ATCGCTTATTCCTTCCTCT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5