BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64090.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496605 jgi|Araly1|496605|fgenesh2_kg.8__2421__AT5G64090.1 2043 0.0
> Ahg496605 jgi|Araly1|496605|fgenesh2_kg.8__2421__AT5G64090.1
Length=1413
Score = 2043 bits (1106), Expect = 0.0
Identities = 1306/1399 (93%), Gaps = 27/1399 (2%)
Strand=Plus/Plus
Query 9 AATCTAGCGAAAACTTCTCTTTTGTCT---CTCAAGTCAGACTCAATTCCCATGGACTTC 65
|||| |||||||||||| | ||||||| |||||||||||||||||| |||||||||||
Sbjct 1 AATCCAGCGAAAACTTC-CCTTTGTCTCAACTCAAGTCAGACTCAATTACCATGGACTTC 59
Query 66 TCCGTCAAACCTTCCGGCGGCTCACCTTCTCCGTCATCTTCCACCTCTTCTTCTACGCCT 125
|||||||||||| ||| |||||| |||||||| || |||||||||||||| ||||| |||
Sbjct 60 TCCGTCAAACCTCCCGCCGGCTCGCCTTCTCCATCGTCTTCCACCTCTTCCTCTACTCCT 119
Query 126 CATCGTTTCAAATCCGTTACCACACCAACCGCTACTGCCGCTGCCGTCTCAGGATTCTCC 185
|| ||||||||||||| ||||||||||||||||||| | | |||| ||||| |||
Sbjct 120 CACCGTTTCAAATCCGCCACCACACCAACCGCTACTG-C-C-GCCG---CAGGAATCT-- 171
Query 186 CCCTCCGCCGCCGCTGATCGAGATCCGATGCATTCCTGGTGGGAATCAGTCTCAAAGCAA 245
| ||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 -CATCCACCG-C-C-GATCGAGATCCGATGCATTCCTGGTGGGAATCAGTCTCAAAGCAA 227
Query 246 CGTTCTCGCATCCTCTCTCTTTCATCTCTTCTCTCCGGCGATTCTCACTTTGAAGACGGT 305
|| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 228 CGCTCTCGCATACTCTCTCTCTCATCTCTCCTCTCCGGCGATTCTCACTTTGAAGACGGC 287
Query 306 GACGTAACTCCGATCTCCTCTCTTGCAGATTCCGATCGGCCGGCGTTATCGTTACTCTCT 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 288 GACGTAACTCCGATCTCCTCTCTTGCAGATTCCGATCGGCCGGCGTTATCGTTACTTTCT 347
Query 366 TCTCGTGCTGCTTACTCTTTGATATCGAATTCTCTTTGCAATCCAGCTTCTGGTTCTGGA 425
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 348 TCTCGCGCTGCTTACTCTTTGATCTCGAATTCTCTTTGCAATCCAGCTTCTGGTTCTGGA 407
Query 426 TCTGATCCGCTTTGTCAATGGCTATACGAAACTTATCTCTCCTCTGATCCACCACTTCGT 485
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 408 TCTGATCCGCTTTGTCAATGGCTATACGAAACCTACCTCTCCTCTGATCCACCGCTTCGT 467
Query 486 CTCGTTGTCCTCTCGTTCTTTCCGTTACTCGTCGGAATGTA-CTTGTCTCGAATTCATTC 544
||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 468 CTCGTCGTCCTCTCGTTCCTTCCGTTACTCGTCGGAATGTACCTTG-CTCGAATTCATTC 526
Query 545 CTCGGATTCGACATCTCTTCCTTCTCTATCCGGATTCGAAGCTGTGCTTCTCGCAATCTA 604
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CTCAGATTCTTCGTCTCTTCCTTCTCTATCCGGATTCGAAGCTGTGCTTCTCGCAATCTA 586
Query 605 CGCCGCTGAGGTTAAAGCTCGCGCAGGTAAACCTATACTCGTACACATTCCAGATCTCTC 664
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 587 CGCCGCTGAGGTTAAAGCTCGCGCAGGTAAACCGATACTCGTACACATTCCAGATCTCTC 646
Query 665 TCAGCCATCTCTTTACCACACACCGAGAAACGGCGTTGACAAATCGCGTGATTCCAATCC 724
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCAGCCATCTCTCTACCACACACCGAGAAACGGCGTTGACAAATCGCGTGATTCCAATCC 706
Query 725 CACCGCCTCCGTCGGAGTCTTGTCTCCGCAGCTTGAGCCTCAGATCGCGGTTAAGTCAAC 784
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CACCGCCTCCGTTGGAGTCTTGTCTCCGCAGCTTGAGCCTCAGATCGCGGTTAAGTCAAC 766
Query 785 TAAGCGAGCCAGCATCGTTGGCGTGGGACTACAATGCTATTTCAAGGAGATCTCACAAAT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 767 TAAGCGAGCCAGCATCGTTGGCGTGGGACTACAATGCTATTTCAAGGAGATCTCACAGAT 826
Query 845 GCCGGCTTGGTCTAAGCTTGAATTCTGTAAGTTCTCTGCTAGTTGGGCTGGTCAAGACTG 904
|||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 827 GCCGGCTTGGTCTAAGCTTGAATTCTGTAAATTCGCTGCTAATTGGGCTGGTCAAGACTG 886
Query 905 CGATTGCAAGGAAAAGATCGATGAAGACGAAGACAAAGTCTTAGCACTAACTAATGGTTT 964
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 887 CGATTGCAAGGAAAAGATCGATGGAGACGAAGACAAAGTCTTAGCACTAACTAATGGTTT 946
Query 965 TGGAGATTCATCCTCTTTCAATGGAAGCAGTGGACGTAGTCTTGAGATCGAAGAGGATTT 1024
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 947 TGGAGATTCCTCCTCTTTCAATGGCAGTAGTGGACGTAGTCTTGAGATCGAAGAGGATTT 1006
Query 1025 TGATAGATTAGCAATCAGAGAGAACGAAGAACAACTTAGCTCTAATGGCGGAGGAGGGGG 1084
|||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 1007 TGATAGATTAGCAATCAGAGAGAACGGAGAACAACTTAGCTCCAATGGCGGCCTCG---- 1062
Query 1085 AGTAGGAAGAGGCGTGAGGATTCCACTTCCATGGGAGCTGTTTCAACCTACGTTAAGGAT 1144
||||| | | |||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1063 --TAGGA-G-G-CGTGAGGATTCCACTTCCATGGGAACTGTTTCAACCTACACTACGGAT 1117
Query 1145 TCTAGGTCATTGCTTGCTTAGTCCATTGAATACTGAAGATGTTAAAGATGCAGCTTCCAA 1204
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1118 TCTAGGTCATTGCTTGCTTAGTCCATTGAACACTGGAGATGTTAAAGATGCAGCTTCCAA 1177
Query 1205 TGCAGTAAGATCATTGTACGCAAGAGCCTCTCATGATCTGAATCCACAGGCGATTTTAGC 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TGCAGTAAGATCATTGTACGCAAGAGCCTCTCATGATCTGAATCCACAGGCGATTTTAGC 1237
Query 1265 TACAAGGAGTTTAGTTAACCTTGATACAAGCGCACGAACCTCGGGAAAGACCGTAGCTGC 1324
|||| ||||||| |||||||| ||||||||| |||||||| ||| |||||||||||||||
Sbjct 1238 TACACGGAGTTTGGTTAACCTCGATACAAGCTCACGAACCGCGGCAAAGACCGTAGCTGC 1297
Query 1325 AGAGACTGTTAATGGCTCATCGAATGTGAACACTCCAAGCAAGGCGAAAAAACCTGAGAT 1384
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1298 AGAGACTGTTAATGGCTCGTCGAATGTTAACACTCCAAGCAAGGCGAAAAAACCAGAGAT 1357
Query 1385 TCTTCTGGCATCAAAGTGA 1403
||||||||| |||||||||
Sbjct 1358 TCTTCTGGCGTCAAAGTGA 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5