BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64100.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951227 jgi|Araly1|951227|scaffold_803114.1 1611 0.0
> Ahg951227 jgi|Araly1|951227|scaffold_803114.1
Length=1042
Score = 1611 bits (872), Expect = 0.0
Identities = 985/1040 (95%), Gaps = 6/1040 (1%)
Strand=Plus/Plus
Query 43 TTAATTACTAAAAAGAAAAATGGGTCGTGGTTACAATTTGCTATTCGTTCTAGTAACGTT 102
||| ||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 5 TTATTTATTAAAAAGAAAAATGAGTCGTGGTTATAATTTGCTATTCGTTCTAGTCACGTT 64
Query 103 TTTAGTATTGGTTGCAGCTGTAACCGCACAAGGGAACCGTGGCTCAAACAGCGGTGGTGG 162
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 65 TTTAGTATTGGTTGCAGCTGTAACCGCACAAGGGAACCGTGGCTCAAACAACGGTGGTGG 124
Query 163 TCGAAGACCAC-ATGTTGGGTTTTATGGGAATAGATGCCGAAACGTAGAGTCTATTGTGA 221
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TCGAAGACCACGAT-TTGGGTTTTATGGGAATAGATGCCGAAACGTAGAGTCTATTGTGA 183
Query 222 GATCTGTAGTTCAGTCTCATGTCCGGTCTATCCCGGCTAATGCACCTGGAATTTTGCGAA 281
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 184 AATCTGTGGTTGAGTCTCATGTCCGGTCTATCCCGGCTAATGCACCTGGAATCTTGCGTA 243
Query 282 TGCATTTCCACGATTGCTTTGTCCATGGCTGCGATGGCTCGGTTCTCCTCGCTGGTAACA 341
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 244 TGCATTTCCACGATTGCTTTGTCCGTGGCTGTGATGGCTCGGTTCTCCTCGCTGGTAACA 303
Query 342 CCTCAGAGAGAACCGCAGTTCCGAACCGTTCATTGAGAGGGTTCGAAGTTATTGAAGAAG 401
|||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
Sbjct 304 CCTCAGAGAGAACCGCAGTTCCAAACCGTTCACTGAGAGGTTTCGAAGTTATTGAAGAGG 363
Query 402 CTAAGGCTCGGCTTGAGAAGGCTTGTCCTCGTACCGTTTCTTGTGCTGATATTCTCACCC 461
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 364 CTAAGGCTCGGCTTGAGAAGGCTTGTCCTCGAACCGTTTCTTGTGCTGATATTCTCACCC 423
Query 462 TTGCAGCCCGAGACGCCGTCGTTTTGACCGGTGGACAACGCTGGGAAGTGCCCTTGGGAC 521
|||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 424 TTGCTGCTCGAGACGCTGTCGTTTTGACCGGTGGACAACGCTGGGAAGTGCCATTGGGAC 483
Query 522 GTCTCGACGGCCGAATCTCGCAAGCCTCAGACGTGAACTTGCCCGGACCAAGCGACTCCG 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 484 GTCTCGACGGCCGAATCTCGCAAGCCTCAGACGTGAACTTGCCCGGACCAAGCGACTCAG 543
Query 582 TTGCTAAGCAGAAGCAAGACTTCGCTGCTAAAACTCTCAACACATTAGACCTCGTGACTC 641
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 544 TTGCTAAGCAGAAGCAAGACTTCGCTGCCAAAACTCTTAACACATTAGACCTCGTAACTC 603
Query 642 TTGTTGGCGGACACACAATAGGAACTGCTGGCTGCGGTCTAGTAAGGGGAAGGTTCGTTA 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 TTGTTGGCGGACACACAATAGGAACTGCTGGCTGCGGTCTAGTAAGGGGAAGGTTCTTTA 663
Query 702 ACTTCAACGGCACAGGACAACCTGACCCATCAATCGACCCGAGTTTTGTGCCGCTGATTC 761
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 664 ACTTCAACGGCACAGGACAACCCGACCCATCAATCGACTCGAGTTTTGTGCCGCTGATTC 723
Query 762 TGGCTCAGTGCCCTCAAAATGGAGGCACCCGAGTGGAGTTAGACGAGGGAAGTGTTGACA 821
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 724 AGGCTCAGTGCCCTCAAAATGGAGGCACCCGAGTCGAGTTAGACGAGGGAAGTGTTGGTA 783
Query 822 AGTTTGACACATCGTTCCTAAGGAAGGTGACGTCAAGTCGCGTGGTTCTCCAATCCGATC 881
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 784 GGTTTGACACATCGTTCCTAAGGAAGGTGACGTCAAGTCGCGTGGTTCTTCAATCCGATC 843
Query 882 TAGTCCTATGGAAGGATCCCGAGACCCGAGCCATCATTGAACGTTTATTAGGATTACGCC 941
|| ||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 844 TACTCCTATGGAGGGATCCCGAGACCCGAGTCATCATTGAACGGTTATTAGGTTTACGCC 903
Query 942 GACCATCCTTGAGGTTCGGAACCGAGTTCGGGAAGTCGATGGTCAAAATGAGTCTCATAG 1001
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 904 GACCATCCTTGAGGTTCGGATCCGAGTTCGGGAAGTCGATGGTCAAGATGAGTCTCATAG 963
Query 1002 AAGTTAAGACTGGATCAGATG--GG-GAGATTCGTCGGGTTTGTTCCGCCATCAACTAAG 1058
||||||||||| |||||| || || ||||||||| ||||||| || || ||||||||||
Sbjct 964 AAGTTAAGACTCGATCAGCTGATGGTGAGATTCGTAGGGTTTGCTCTGCGATCAACTAAG 1023
Query 1059 ATTTaaaaaaaCACAAATGT 1078
| |||||||| |||||||||
Sbjct 1024 AATTAAAAAA-CACAAATGT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5