BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64110.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951228 jgi|Araly1|951228|scaffold_803115.1 1589 0.0
Ahg952288 jgi|Araly1|952288|scaffold_53500001.1 928 0.0
> Ahg951228 jgi|Araly1|951228|scaffold_803115.1
Length=1040
Score = 1589 bits (860), Expect = 0.0
Identities = 984/1043 (94%), Gaps = 12/1043 (1%)
Strand=Plus/Plus
Query 64 AAAAACTAAGAAGAAACCAAAATGAGAAGTTTTACTAATTTAAATCCTTG---C--T-AC 117
|||||||||||||||||||||||| |||||| ||||||||| |||||||| | | ||
Sbjct 1 AAAAACTAAGAAGAAACCAAAATGGGAAGTTCTACTAATTTTAATCCTTGCTACGTTAAC 60
Query 118 GTTCTCTTACCGTTCTTCCTTGTCCTAGCCACGAATGCAACACATACAAACAATTTCCTC 177
|||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 61 GTTCTCTTACCGTTTTTCCTTGTCCTAGCCGCGAATGCAACACATAAAAACTTTTTCCTC 120
Query 178 CCAAGGCCACGGACT-GGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTTCG 236
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CCAAGGCCACGGA-TCGGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTGCG 179
Query 237 GTCCGTGGTTGAGTCTAACTATCTTGCTAATCCAGCCAATGCTCCAGGCATTTTGCGTAT 296
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 GTCCGTGGTCGAGTCTAACTATCTTGCTAATCCAGCTAATGCTCCGGGCATTTTGCGTAT 239
Query 297 GCACTTTCACGATTGTTTCGTTCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAA 356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCACTTTCACGATTGTTTCGTCCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAA 299
Query 357 CTCTGAGCGAACGGCGATTCCAAATCTATCGTTGAGAGGGTTTAATGTCATTGAAGAAGC 416
||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 300 CTCCGAGAGAACGGCGATTCCGAATCTATCGTTGAGAGGGTTTAATGTCATCGAAGAAGC 359
Query 417 TAAGACTCAGCTTGAGATCGCTTGTCCTCGAACAGTCTCTTGTGCTGATATCCTCGCACT 476
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 360 TAAGACGCAGCTTGAGATCGCTTGTCCTCGAACTGTCTCTTGTGCTGATATTCTCGCACT 419
Query 477 CGCTGCACGTGACTTCGTCCA-TTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGA 535
||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCTGCACGCGACTTCGT-CAGTTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGC 478
Query 536 GACTCGATGGCCGAATTTCTCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCG 595
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GACTCGATGGCCGGGTTTCGCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCG 538
Query 596 TTGCCGTGCAGAAGCTGAGGTTTGCCGaaaaaaaTCTTAATACCCAAGATCTCGTTGTCC 655
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGCCGTACAGAAGCTGAGGTTCGCCGAAAAAAATCTTAATACCCAAGATCTCGTTGTCC 598
Query 656 TTGCTGCTGGACATACGATAGGAACGGCCGGATGTATTGTGTTTAGGGACAGATTCTTCA 715
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 599 TTGCTGCTGGACACACGATAGGAACGGCCGGGTGTGTTGTGTTTAGGGACAGATTCTTCA 658
Query 716 ACTACGACAACACAGGAAGTCCGGACCCAACCATCGCCCCGAGTTTTGTCCCTCTGATCC 775
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 659 ACTACGACAACACAGGAAGTCCGGACCCAACCATCGCCCCGAGTTTCGTCCCTCAGATCC 718
Query 776 AAGCTCAATGCCCTCTGAATGGTGACCCCGCGACTCGTGTAGTGCTGGACACGGGAAGTG 835
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 719 AAGCTCAATGTCCTCTGAACGGTGACCCTGCGACTCGTGTAGTGCTGGACACGGGAAGTG 778
Query 836 GTGACCAATTTGATACGTCGTACCTTAACAACTTGAAGAACGGTCGAGGTCTCCTCGAGT 895
| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 779 GAGACCAATTCGATACGTCGTACCTTAACAACTTGAGGAACGGTCGAGGTCTCCTCGAGT 838
Query 896 CTGATCAGGTCCTATGGACTAATC-TCGAGACCCGACCCATCGTGGAAAGGCTTCTAGGA 954
|||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||
Sbjct 839 CTGATCAGGTCCTATGGACTAACCCT-GAGACCCGACCCATCGTGGAACGGCTTCTAGGA 897
Query 955 CTACGGTTTCCGTTTCTTATTTTCGGACTGGAGTTCGCGAGGTCCATGACCAAGATGAGT 1014
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTACGATTTCCGTTTCTTATTTTCGGACTGGAGTTCGCGAGGTCCATGACCAAGATGAGT 957
Query 1015 CAAATCGAGATCAAGACGGGTTTGGATGGGGAGATTCGTAGGGTTTGTTCTGCGGTTAAC 1074
|| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 CAGATCGAGGTCAAGACGGGTTTGGACGGGGAGATTCGTAGGGTTTGTTCTGCGGTTAAC 1017
Query 1075 TAATTAATATAAGATTAATTAAC 1097
| ||||| |||| ||||||||||
Sbjct 1018 TGATTAAAATAAAATTAATTAAC 1040
> Ahg952288 jgi|Araly1|952288|scaffold_53500001.1
Length=631
Score = 928 bits (502), Expect = 0.0
Identities = 568/600 (95%), Gaps = 4/600 (1%)
Strand=Plus/Plus
Query 64 AAAAACTAAGAAGAAACCAAAATGAGAAGTTTTACT-AATTTAAATCCTTGCTACGTTCT 122
|||||||||||||||||||||||| |||||| |||| || || |||||||||||||||||
Sbjct 1 AAAAACTAAGAAGAAACCAAAATGGGAAGTTCTACTAAAATT-AATCCTTGCTACGTTCT 59
Query 123 CTTACCGTTCTTCCTTGTCCTAGCCACGAATGCAACACATACAAACAATTTCCTCCCAAG 182
||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 60 CTTACCGTTTTTCCTTGTCCTAGCCGCGAATGCAACACATAAAAACGTTTTCCTCCCAAG 119
Query 183 GCCACGGACT-GGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTTCGGTCCG 241
|||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 GCCACGGA-TCGGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTGCGGTCCG 178
Query 242 TGGTTGAGTCTAACTATCTTGCTAATCCAGCCAATGCTCCAGGCATTTTGCGTATGCACT 301
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 179 TGGTCGAGTCTAACTATCTTGCTAATCCAGCTAATGCTCCGGGCATTTTGCGTATGCACT 238
Query 302 TTCACGATTGTTTCGTTCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAACTCTG 361
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 TTCACGATTGTTTCGTCCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAACTCCG 298
Query 362 AGCGAACGGCGATTCCAAATCTATCGTTGAGAGGGTTTAATGTCATTGAAGAAGCTAAGA 421
|| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 AGAGAACGGCGATTCCGAATCTATCGTTGAGAGGGTTTAATGTCATCGAAGAAGCTAAGA 358
Query 422 CTCAGCTTGAGATCGCTTGTCCTCGAACAGTCTCTTGTGCTGATATCCTCGCACTCGCTG 481
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 359 CGCAGCTTGAGATCGCTTGTCCTCGAACTGTCTCTTGTGCTGATATTCTCGCACTCGCTG 418
Query 482 CACGTGACTTCGTCCATTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGAGACTCG 541
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 CACGCGACTTCGTCAATTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGCGACTCG 478
Query 542 ATGGCCGAATTTCTCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCGTTGCCG 601
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGGCCGGGTTTCGCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCGTTGCCG 538
Query 602 TGCAGAAGCTGAGGTTTGCCGaaaaaaaTCTTAATACCCAAGATCTCGTTGTCCTTGCTG 661
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TACAGAAGCTGAGGTTCGCCGAAAAAAATCTTAATACCCAAGATCTCGTTGTCCTTGCTG 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5