BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64110.1 Length=1397 Score E Sequences producing significant alignments: (Bits) Value Ahg951228 jgi|Araly1|951228|scaffold_803115.1 1589 0.0 Ahg952288 jgi|Araly1|952288|scaffold_53500001.1 928 0.0 > Ahg951228 jgi|Araly1|951228|scaffold_803115.1 Length=1040 Score = 1589 bits (860), Expect = 0.0 Identities = 984/1043 (94%), Gaps = 12/1043 (1%) Strand=Plus/Plus Query 64 AAAAACTAAGAAGAAACCAAAATGAGAAGTTTTACTAATTTAAATCCTTG---C--T-AC 117 |||||||||||||||||||||||| |||||| ||||||||| |||||||| | | || Sbjct 1 AAAAACTAAGAAGAAACCAAAATGGGAAGTTCTACTAATTTTAATCCTTGCTACGTTAAC 60 Query 118 GTTCTCTTACCGTTCTTCCTTGTCCTAGCCACGAATGCAACACATACAAACAATTTCCTC 177 |||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||| Sbjct 61 GTTCTCTTACCGTTTTTCCTTGTCCTAGCCGCGAATGCAACACATAAAAACTTTTTCCTC 120 Query 178 CCAAGGCCACGGACT-GGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTTCG 236 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 CCAAGGCCACGGA-TCGGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTGCG 179 Query 237 GTCCGTGGTTGAGTCTAACTATCTTGCTAATCCAGCCAATGCTCCAGGCATTTTGCGTAT 296 ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 180 GTCCGTGGTCGAGTCTAACTATCTTGCTAATCCAGCTAATGCTCCGGGCATTTTGCGTAT 239 Query 297 GCACTTTCACGATTGTTTCGTTCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAA 356 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 GCACTTTCACGATTGTTTCGTCCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAA 299 Query 357 CTCTGAGCGAACGGCGATTCCAAATCTATCGTTGAGAGGGTTTAATGTCATTGAAGAAGC 416 ||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 300 CTCCGAGAGAACGGCGATTCCGAATCTATCGTTGAGAGGGTTTAATGTCATCGAAGAAGC 359 Query 417 TAAGACTCAGCTTGAGATCGCTTGTCCTCGAACAGTCTCTTGTGCTGATATCCTCGCACT 476 |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 360 TAAGACGCAGCTTGAGATCGCTTGTCCTCGAACTGTCTCTTGTGCTGATATTCTCGCACT 419 Query 477 CGCTGCACGTGACTTCGTCCA-TTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGA 535 ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 420 CGCTGCACGCGACTTCGT-CAGTTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGC 478 Query 536 GACTCGATGGCCGAATTTCTCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCG 595 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 479 GACTCGATGGCCGGGTTTCGCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCG 538 Query 596 TTGCCGTGCAGAAGCTGAGGTTTGCCGaaaaaaaTCTTAATACCCAAGATCTCGTTGTCC 655 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 539 TTGCCGTACAGAAGCTGAGGTTCGCCGAAAAAAATCTTAATACCCAAGATCTCGTTGTCC 598 Query 656 TTGCTGCTGGACATACGATAGGAACGGCCGGATGTATTGTGTTTAGGGACAGATTCTTCA 715 ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 599 TTGCTGCTGGACACACGATAGGAACGGCCGGGTGTGTTGTGTTTAGGGACAGATTCTTCA 658 Query 716 ACTACGACAACACAGGAAGTCCGGACCCAACCATCGCCCCGAGTTTTGTCCCTCTGATCC 775 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 659 ACTACGACAACACAGGAAGTCCGGACCCAACCATCGCCCCGAGTTTCGTCCCTCAGATCC 718 Query 776 AAGCTCAATGCCCTCTGAATGGTGACCCCGCGACTCGTGTAGTGCTGGACACGGGAAGTG 835 |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 719 AAGCTCAATGTCCTCTGAACGGTGACCCTGCGACTCGTGTAGTGCTGGACACGGGAAGTG 778 Query 836 GTGACCAATTTGATACGTCGTACCTTAACAACTTGAAGAACGGTCGAGGTCTCCTCGAGT 895 | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 779 GAGACCAATTCGATACGTCGTACCTTAACAACTTGAGGAACGGTCGAGGTCTCCTCGAGT 838 Query 896 CTGATCAGGTCCTATGGACTAATC-TCGAGACCCGACCCATCGTGGAAAGGCTTCTAGGA 954 |||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||||| Sbjct 839 CTGATCAGGTCCTATGGACTAACCCT-GAGACCCGACCCATCGTGGAACGGCTTCTAGGA 897 Query 955 CTACGGTTTCCGTTTCTTATTTTCGGACTGGAGTTCGCGAGGTCCATGACCAAGATGAGT 1014 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 CTACGATTTCCGTTTCTTATTTTCGGACTGGAGTTCGCGAGGTCCATGACCAAGATGAGT 957 Query 1015 CAAATCGAGATCAAGACGGGTTTGGATGGGGAGATTCGTAGGGTTTGTTCTGCGGTTAAC 1074 || |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 958 CAGATCGAGGTCAAGACGGGTTTGGACGGGGAGATTCGTAGGGTTTGTTCTGCGGTTAAC 1017 Query 1075 TAATTAATATAAGATTAATTAAC 1097 | ||||| |||| |||||||||| Sbjct 1018 TGATTAAAATAAAATTAATTAAC 1040 > Ahg952288 jgi|Araly1|952288|scaffold_53500001.1 Length=631 Score = 928 bits (502), Expect = 0.0 Identities = 568/600 (95%), Gaps = 4/600 (1%) Strand=Plus/Plus Query 64 AAAAACTAAGAAGAAACCAAAATGAGAAGTTTTACT-AATTTAAATCCTTGCTACGTTCT 122 |||||||||||||||||||||||| |||||| |||| || || ||||||||||||||||| Sbjct 1 AAAAACTAAGAAGAAACCAAAATGGGAAGTTCTACTAAAATT-AATCCTTGCTACGTTCT 59 Query 123 CTTACCGTTCTTCCTTGTCCTAGCCACGAATGCAACACATACAAACAATTTCCTCCCAAG 182 ||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||| Sbjct 60 CTTACCGTTTTTCCTTGTCCTAGCCGCGAATGCAACACATAAAAACGTTTTCCTCCCAAG 119 Query 183 GCCACGGACT-GGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTTCGGTCCG 241 |||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 120 GCCACGGA-TCGGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTGCGGTCCG 178 Query 242 TGGTTGAGTCTAACTATCTTGCTAATCCAGCCAATGCTCCAGGCATTTTGCGTATGCACT 301 |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 179 TGGTCGAGTCTAACTATCTTGCTAATCCAGCTAATGCTCCGGGCATTTTGCGTATGCACT 238 Query 302 TTCACGATTGTTTCGTTCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAACTCTG 361 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 239 TTCACGATTGTTTCGTCCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAACTCCG 298 Query 362 AGCGAACGGCGATTCCAAATCTATCGTTGAGAGGGTTTAATGTCATTGAAGAAGCTAAGA 421 || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 299 AGAGAACGGCGATTCCGAATCTATCGTTGAGAGGGTTTAATGTCATCGAAGAAGCTAAGA 358 Query 422 CTCAGCTTGAGATCGCTTGTCCTCGAACAGTCTCTTGTGCTGATATCCTCGCACTCGCTG 481 | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 359 CGCAGCTTGAGATCGCTTGTCCTCGAACTGTCTCTTGTGCTGATATTCTCGCACTCGCTG 418 Query 482 CACGTGACTTCGTCCATTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGAGACTCG 541 |||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 419 CACGCGACTTCGTCAATTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGCGACTCG 478 Query 542 ATGGCCGAATTTCTCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCGTTGCCG 601 ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ATGGCCGGGTTTCGCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCGTTGCCG 538 Query 602 TGCAGAAGCTGAGGTTTGCCGaaaaaaaTCTTAATACCCAAGATCTCGTTGTCCTTGCTG 661 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TACAGAAGCTGAGGTTCGCCGAAAAAAATCTTAATACCCAAGATCTCGTTGTCCTTGCTG 598 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52221725895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5