BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64120.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496608 jgi|Araly1|496608|fgenesh2_kg.8__2424__AT5G64120.1 1967 0.0
> Ahg496608 jgi|Araly1|496608|fgenesh2_kg.8__2424__AT5G64120.1
Length=1276
Score = 1967 bits (1065), Expect = 0.0
Identities = 1218/1290 (94%), Gaps = 18/1290 (1%)
Strand=Plus/Plus
Query 1 ACTATAACTTAAACACACACTTCATCTTCTCTAAAACCCTAAAATTTAAACACAAGATGG 60
|||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 ACTAAAACTTGAACACACACTTCATCATCTCTAAAACCCTAAAATATAAACACAAGATGG 60
Query 61 GTTTGGTTAGATCATTGTGCTTATTAATAACCTTCCTTAATTGTCTCATCATCTCGGTTC 120
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 61 GTTTGGTTAGATCATTGTGCTTATTCATAACCTTCCTTAGTTGTCTCATCATCTCGGTTC 120
Query 121 ATGGCCAAGCCACCGCAAGGCCTGGTCCTGTTTCCGGCACTAGGATTGGGTTTTACTTAA 180
||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 121 ATGGCCAAGCCACCGGAAGGCCGGGTCCTGTTTCCGGCACAAGGATTGGGTTTTACTTGA 180
Query 181 CTACGTGTCCTAGAGCTGAGACTATTGTCCGAAACGCCGTGAATGCTGGTTTCAGTTCTG 240
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACGTGTCCTAGAGCTGAAACCATTGTCCGAAACGCCGTGAATGCTGGTTTCAGTTCTG 240
Query 241 ACCCCAGAATCGCACCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTT 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCCCAGAATCGCTCCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTT 300
Query 301 GTGACGGTTCGATCCTTATATCCGGAGCTAACACCGAGAGAACCGCCGGTCCGAACCTCA 360
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGACGGTTCGATCCTGATATCGGGAGCTAACACCGAGAGAACCGCCGGTCCGAACCTCA 360
Query 361 ATCTCCAAGGATTTGAAGTCATAGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCTG 420
|||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 361 ATCTCCGAGGGTTTGAAGTCATCGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCAG 420
Query 421 GAGTTGTCTCTTGTGCTGATATTTTAGCATTAGCCGCTCGTGACACAGTCATTCTCACTC 480
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 421 GAGTTGTCTCTTGTGCTGATATTTTAGCCTTAGCCGCTCGTGACACAGTCGTTCTCACGC 480
Query 481 AAGGAACAGGCTGGCAAGTACCAACGGGACGTAGAGATGGTAGAGTTTCTTTGGCTTCGA 540
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 AAGGAACAGGATGGCAAGTACCAACGGGACGTAGAGATGGCCGAGTTTCTTTGGCTTCGA 540
Query 541 ATGCTAACAATCTCCCTGGTCCCCGTGACTCCGTTGCCGTTCAACAACAGAAATTCTCCG 600
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGCTAACAATCTCCCCGGTCCACGTGACTCCGTTGCCGTTCAACAACAGAAATTCTCCG 600
Query 601 CCTTGGGACTCAATACTCGTGATCTCGTCGTCCTCGTCGGAGGACACACGATCGGAACAG 660
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTTAGGACTCAATACTCGTGATCTCGTCGTCCTCGTCGGAGGACACACGATCGGAACAG 660
Query 661 CAGGATGTGGTGTATTCAGGAACAGGCTATTCAATACCACCGGACAAACCGCAGATCCAA 720
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 661 CAGGATGTGGTGTATTCAGGAACAGGCTATTCAACACCACCGGACAACCCGCAGATCCAA 720
Query 721 CCATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 CCATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGCTT 780
Query 781 CAGTGCGCGTGGATCTCGACACCGGAAGCGGAAGCACTTGGGACACTTCTTACTACAACA 840
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 781 CAGTGCGCGTGGATCTCGACACCGGAAGCGGAACCACTTGGGACACTTCATACTACAACA 840
Query 841 ACCTAAGCCGTGGGCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGATCCAGCCA 900
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCTAAGCCGTGGCCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGATCCAGCCA 900
Query 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960
Query 961 GGTCAATGGTCAGAATGAGTAATATCGGTGTGGTTACCGGAGCTAATGGGGAAATCCGTA 1020
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 961 GGTCAATGGTCAGGATGAGTAATATCGGTGTGGTTACTGGGGCTAATGGGGAAATCCGTA 1020
Query 1021 GGGTTTGCTCTGCGGTTAATTAATTAACCGATTAGAATCTGTCGTGATAAACTTTCATGA 1080
|||||||||||||||||||||||||||||||||| |||| ||| | | ||||
Sbjct 1021 GGGTTTGCTCTGCGGTTAATTAATTAACCGATTAAAATC---CGT--T----T--CATGG 1069
Query 1081 CGCAAAGTACTTGTTTCGAGTGTGGTTTTAATCTGAACAATAAATAAACCAATAGAAAAC 1140
| | ||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||
Sbjct 1070 CCCTGAGTACTTGTTTCGAGTGTGATTTTAATTTCAACAATAAACCAACCAATAGAAAAC 1129
Query 1141 GACATACA--AA-GAAAAAA-CCCAAAAGTGGGTTGATGAAAATTGTATCTATAAGGTGT 1196
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 GACATACATGAAAGAAAAAAACCCAAAAGTGGGTTGATGAAAATTGTATCTATAAG-TGT 1188
Query 1197 TGGTATTCGATTTCTTTTGGTTTTAGTTaaaaaaaaCTGTAATGTCTTCACAAAAATATT 1256
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| |
Sbjct 1189 TGGTATTCGATTTCTTTTGGTTTTAATTAATAAAA--TGTAATGTCTTCACAAAAATAGT 1246
Query 1257 ATAATGAGTTTGGTCCTAGTTTGGATTCTT 1286
|||||||||||||||||| ||||| |||||
Sbjct 1247 ATAATGAGTTTGGTCCTACTTTGGCTTCTT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5