BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64130.3
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496610 jgi|Araly1|496610|fgenesh2_kg.8__2426__AT5G64130.1 582 1e-165
> Ahg496610 jgi|Araly1|496610|fgenesh2_kg.8__2426__AT5G64130.1
Length=652
Score = 582 bits (315), Expect = 1e-165
Identities = 336/346 (97%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 383 AGGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAAGGTGTTG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 AGGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAAGGTGTTG 368
Query 443 CGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGCCAACGCAGCAGCAGA 502
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 369 CGAAGCCAAAGGGACCCCTTGAAGCTCTTCGTCCCAAGTTACAGCCAACGCAGCAGCAGA 428
Query 503 CACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGATGGAGGAGCTGCTC 562
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CGCGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGATGGAGGAGCTGCTC 488
Query 563 AGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAGACAGAGAGATGTATGAAAACTCT 622
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 489 AGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGTGA-TGA-TGATGTATGAAAACTCT 546
Query 623 TGTGTAAGAAGTCTGTTATAATCGGATATTTTCTGTCCATTTGAAACATCAGATATGGCT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGTGTAAGAAGTCTGTTATAATCGGATATTTTCTGTCCATTTGAAACATCAGATATGGCT 606
Query 683 TTCATTAAAATCTTAACTTGATCGAGAAATTATAGTTTACCCTTTT 728
|||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 607 TTCATTAAAATCTTAACTTGATCGAGAAATGATAGTTTACCCCTTT 652
Score = 394 bits (213), Expect = 5e-109
Identities = 282/312 (90%), Gaps = 18/312 (6%)
Strand=Plus/Plus
Query 16 ATCAATTCACCAAGATCTTCTTCTTCTCCCATTTCTCCATTGACGACAGCGAAGAAACGT 75
|||||||||| |||| ||||||||||||||||| |||||||| ||| ||||| ||||
Sbjct 1 ATCAATTCACAAAGAAGATCTTCTTCTCCCATTTCGCCATTGACAACAACGAAGCTACGT 60
Query 76 CCCAACGAGCTCAGAGAGCCACACCAAT-C-C-TC--C-T-TT-TTCTTCTTCTTCTTCC 127
|||||||||||||||||||||||||||| | | || | | || ||||||||||||||||
Sbjct 61 CCCAACGAGCTCAGAGAGCCACACCAATCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCC 120
Query 128 TCCTGCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGA 187
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTGCATTTTTGG-TTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGA 179
Query 188 AAGAGCAA---G-G-AA--A--CCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCAC 238
|||||||| | | || | |||||||||||||||||| |||||||||||||||||||
Sbjct 180 AAGAGCAATCAGTGCAAGGAAACCTCACCAACGAGGCAGAAAAGTCAATGCCATCATCAC 239
Query 239 AGCAGGAGGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTC 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AGCAGGAGGAGGCTGCTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCTCCTC 299
Query 299 TCATTTCCAAGG 310
||||||||||||
Sbjct 300 TCATTTCCAAGG 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28973416920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5