BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64140.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951231 jgi|Araly1|951231|scaffold_803118.1                        357    4e-98


> Ahg951231 jgi|Araly1|951231|scaffold_803118.1
Length=235

 Score =  357 bits (193),  Expect = 4e-98
 Identities = 213/222 (96%), Gaps = 3/222 (1%)
 Strand=Plus/Plus

Query  77   CAGAATGGATTCTCAAATCAAACACGCCGTGGTCGTGAAGGTCATGGGTAGGACTGGTTC  136
            ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  17   CAGAATGGATTCTCAGATCAAACACGCCGTGGTCGTTAAGGTCATGGGTAGGACTGGTTC  76

Query  137  TCGTGGTCAGGTCACTCAGGTTAGAGTCAAATTCACTGATTCAGACCGTTTCATCATGAG  196
            |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  77   TCGTGGTCAGGTCACTCAGGTTAGAGTCAAGTTCACTGATTCAGACCGTTACATCATGAG  136

Query  197  GAACGTGAAAGGACCCGTCAGAGAAGGAGATGTCCTCACTCTCCTCGAGTCCGAGAGAGA  256
            ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  137  GAACGTGAAAGGACCGGTCAGAGAAGGAGATATCCTCACTCTCCTCGAGTCCGAGAGAGA  196

Query  257  AGCTAGAAGACTCCGTTGATTCCACCATATCCCAATTCTCTT  298
            ||||||||||||||||||||||||   |||||||||||||||
Sbjct  197  AGCTAGAAGACTCCGTTGATTCCA---TATCCCAATTCTCTT  235



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5