BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64150.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496612 jgi|Araly1|496612|fgenesh2_kg.8__2428__AT5G64150.1 1594 0.0
> Ahg496612 jgi|Araly1|496612|fgenesh2_kg.8__2428__AT5G64150.1
Length=1590
Score = 1594 bits (863), Expect = 0.0
Identities = 988/1049 (94%), Gaps = 6/1049 (1%)
Strand=Plus/Plus
Query 602 AAATCCTCT-CGGCCGACTAAGTCTCTCAGCATAACTCCCAAGACACCGCTATACCTTAG 660
||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 542 AAATCCTCTACGG-AGACTAATTCTCTCAGCATAACTCCCAAGACACCGCTATTCCTTAG 600
Query 661 GACGCCGTCGCACGCAACTTCTCTATCGGAGGTTTGGAAATGGCACGACTGGGCGAAAGA 720
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 AACGCCGTCGCACGCAACTTCTCTATCTGAGGTTTGGAAATGGCACGACTGGGCGAAAGA 660
Query 721 TCTGGCGTCCTCCGTAGAGGAATCTTCGAAGAATTCCGAAGATACTCTTGACTCTGTCAT 780
|||||| |||||||||||||||||||||| |||||| |||||| |||||||||||| ||
Sbjct 661 TCTGGCCTCCTCCGTAGAGGAATCTTCGACGAATTCTGAAGATGTTCTTGACTCTGTAAT 720
Query 781 TCTCCACCGTGAGCTAAAATGGCTGATCGAAGACTCAATCGTAGACGATCCTTTAGTGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTCCACCGTGAGCTAAAATGGCTGATCGAAGACTCAATCGTAGACGATCCTTTAGTGAT 780
Query 841 TCTTCATAGAAGCGAAATCGCGGACAACGGCGAGAAGAATGTGAAATTGAGAGCGTCGTT 900
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 TCTTCACAGAAGCGAAATCGCGGACAACGGCGAGAAGAATGTGAAATTGAGAGCGCCGTT 840
Query 901 GGAGGAGCTTTACGATTTATGGAGGCAGAGGATCGAGAAGCGTCGGCCGTTTCAGTACGT 960
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 GGAGGAGCTTTATGATTTATGGAGGCAGAGGATCGAGAAGCGGCGGCCGTTTCAGTACGT 900
Query 961 CGTCGGATGCGAGCATTGGAGAGATCTAGTGTTGTGCGTTGAGGAAGGGGTTCTAATTCC 1020
||||||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 901 GGTCGGATGCGAATACTGGAGAGATTTGGTGTTGTGCGTCGAGGAAGGGGTTCTAATTCC 960
Query 1021 GAGACCGGAGACGGAACTGATCGTCGATATGGTGGAGGAGCTTGTAACGAGAGATGAATG 1080
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 961 GAGACCGGAGACGGAACTTATCGTCGATATGGTGGAGGAGCTTGTAGCGAGAGATGAATG 1020
Query 1081 GTTTAAGAAAGATATTTGGGCTGATCTTGGGACAGGAAGTGGTGCTATTGCGATCGGCAT 1140
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 GTTTAAGAAAGGTTTTTGGGCTGATCTTGGGACAGGAAGTGGTGCAATTGCGATCGGCAT 1080
Query 1141 TGCTAAAGTCTTGGGAAGCCGTGGGAGAGTTATAGCTACAGATCTCAGTCCGGTGGC-GA 1199
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1081 TGCTAAAGTCTTGGGAAGCAGTGGGAGAGTTATAGCTACAGATCTCAGTCCGGTGGCAGT 1140
Query 1200 TCGCCGTCGCCGGCCACAATGTGCAGAGATACAGCCTTGAGGGGATGATTGAAGTGAGAG 1259
| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 T-GCCGTTGCCGGAAAAAATGTGCAGAGATACAGCCTTGAGGGGATGATTGAAGTGAGAG 1199
Query 1260 AAGGATCTTGGTTTGAGCCTTTGAAAGATCTTGAAGGAAAACTTGTGGGGCTTGTGAGTA 1319
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1200 AAGGATCATGGTTTGAGCCTTTGAAAGGTCTTGAAGGAAAACTTGTGGGGCTTGTAAGTA 1259
Query 1320 ATCCACCATACATACCAAGTGATGACATTCCAGGCCTACAAGCTGAAGTTGGTAGACACG 1379
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |
Sbjct 1260 ATCCACCATACATACCAAGTGATGACATACCAGACCTACAAGCTGAAGTTGGTAAACATG 1319
Query 1380 AACCGAAACTTGCATTGGATGGTGGTATTGATGGAACTGATAGTCTTTTTCATCTCTGTC 1439
|||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 1320 AACCGAAACTTGCATTGGATGGTGGTATCGATGGAACTGATAGTCTTCTCCATCTCTGTC 1379
Query 1440 ATGGGGCTTCTCGGATGCTTCAAC-CTGGTGGCTTTTTCGTTTTCGAGACTAATGGAGAG 1498
|||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||
Sbjct 1380 ATGGGGCTTCTCGGATGCTTCAACGC-GGTGGTTTTTTCGTTTTCGAGACCAATGGAGAG 1438
Query 1499 AAGCAAAGCAAGATGATCGTAGATTACATGATGACCAGTGATCTCAAAGACTGTTTCTCT 1558
|| ||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||
Sbjct 1439 AAACAAAGCAAGATGATCGTTGATTACATGATGAGCAATGATCTAAAAGACTGTTTCTCA 1498
Query 1559 GATTTGAAGATAGTTTCTGATTTTGCTGGAATCAATCGGTTCGTGACTGGCTTTCGTCTC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GATTTGAAGATAGTTTCTGATTTTGCTGGAATCAATCGGTTCGTGACTGGCTTTCGTCTC 1558
Query 1619 TGAGCTTTTTTACACAACTCGCTGTAGTG 1647
|||| ||||||||||| || ||||| |||
Sbjct 1559 TGAGATTTTTTACACAGCTTGCTGTGGTG 1587
Score = 715 bits (387), Expect = 0.0
Identities = 502/554 (91%), Gaps = 21/554 (4%)
Strand=Plus/Plus
Query 26 AATTCGATGAATTGAGGTGTATAAAATCAAAATCAAAGAGAAGGAAGACCTGAGAGAAAA 85
|||||||||||||||||| | | | || ||||||||||| || ||||||||||||||
Sbjct 1 AATTCGATGAATTGAGGT-T-T---A-GAAGATCAAAGAGAAAGATGACCTGAGAGAAAA 54
Query 86 CGTCGTCAGCTGAAGGAAGGCCGGCGTTTTTAGCGGAGGAGGCAGATGCAGAGAAATCAA 145
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 55 CGTCGTCAGCTGAAGGAAGGCCGGAGTGTTTAGCGGAGGAGGCAGATGCAGAGAAATCAA 114
Query 146 ACACAGAAGACGATTCATATCTCCGAACATCATTATCCCCATCTTCGTCGGAGTTGTCGT 205
||||||| ||||||||||||||||||||| ||||||| |||| | || ||||| ||||
Sbjct 115 ACACAGACGACGATTCATATCTCCGAACACCATTATCGTCATC-T--TCAGAGTTCTCGT 171
Query 206 AATCCCCAAAAGCTCTCTCCTCTGCTTCTTCTTCTTCAGCAGAAGAATAGCCTTGAAGCA 265
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 172 AATCTCCAAAAGTTCTCTCCTCTGCTTCTTCTTCTTCTGCAGAAGAATAGCCTTGAAGCA 231
Query 266 GCGTCAAGCTCATGTTTGTTCGTTGCTCCAAAGATCTATCGGAGCCGCAAACAAAAATAA 325
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 232 GCGTCAAGCTCATGTTTGTTCGTTGCTCCAAAGATCTATCGGAGCCGCAAACGAAAATAA 291
Query 326 GAAGAACTTTTCTTTATTTATGCTTTAGCCCCTTATATTCCTTGTTAATCTTATTTCAAT 385
| |||||||||||| |||||||||||||||| ||| ||||||||| ||||| ||||||||
Sbjct 292 GTAGAACTTTTCTTAATTTATGCTTTAGCCCTTTAGATTCCTTGTAAATCTAATTTCAAT 351
Query 386 CCTCGGTTCAAAACCCGGCTAAAA--ACA--G-AACCGGATTATCCGGTTTA-G-TTG-G 437
||||||||||||||||||| |||| | | | ||||||||||||||||||| | || |
Sbjct 352 CCTCGGTTCAAAACCCGGCGAAAACGAAACCGGAACCGGATTATCCGGTTTACGGTTTAG 411
Query 438 T---AATATATTTATAAACCGATTTGGTCTGTTTGTGCGGCAAAAACCTTGAAATGATAA 494
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTGGAA-AGATTTATAAACCGATTTGGTCTGTTTGTGCGGCAAAAACCTTGAAATGATAA 470
Query 495 GAATCTTCCCAAGTCTACGGTTAACCTCTTTGCTCTCTGCCGCTAAACCTCTTTGCTCAT 554
||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 471 GAATCTTTCCAAGTTTACGGTTTACCTCTCTGCTCTCTGCCGCTAAACCTCTTTGCTCAT 530
Query 555 CTTCTCCGGCGAAA 568
|||||||||||||
Sbjct 531 ATTCTCCGGCGAAA 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5