BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64180.1
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951235 jgi|Araly1|951235|scaffold_803122.1 843 0.0
> Ahg951235 jgi|Araly1|951235|scaffold_803122.1
Length=520
Score = 843 bits (456), Expect = 0.0
Identities = 500/521 (96%), Gaps = 4/521 (1%)
Strand=Plus/Plus
Query 65 ATCCTTTGATC-TTTTTCCGATGGAGGAGCA-ATTCGGCGGGAGCGATGAGAGATGGAAA 122
||| ||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 1 ATCTTTTGATCTTTTTTCCGATGGAGGAGCAGA-TCGGAGGGAGCGATGAGAGATGGAAA 59
Query 123 GGATCATTGGAGAATATAACGGAGATGGCATCGAATCTCGATTCGCTTCAGAAACTTCTC 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 GGATCATTGGAGAATATAACGGAGATGGCATCGAATCTCGATTCTCTTCAGAAACTTCTC 119
Query 183 CTCAAGAAAGCAGTCTTCGTTGAAGAAGACACTTTCTCTAGAGCTTCTCTCGTCTCCGAG 242
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 120 CTCAAGAAAGCAGTCTTCGTCGAAGAAGACACTTTCGCTAGAGCTTCTCTCGTCTCCGAA 179
Query 243 CAAGCCCGAACAATCAAGGTTCTTGAGCAAAGAGTACAAACACTAGAAAGAGAACTAGAT 302
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAAGCCCGAACCATCAAGGTTCTTGAGCAAAGAGTACAAACACTAGAAAGAGAACTAGAT 239
Query 303 GCTGCCATTACAGCTGCTGCTCATGCTCGGTCTGAGAAACGCCAAGCTGAGTCCTCTCAA 362
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GCTGCCATTACAGCTGCTGCTCATGCTCGGTCTGAGAAACGACAAGCTGAGTCCTCTCAA 299
Query 363 AAGGCTGCTGAATCACGTGCCCAAGATGTCACAAAAGAGCTTGAAAACACCACAAAGGTT 422
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 300 AAGGCTGCTGAATCACGTGCCCAAGAGGTCACGAAAGAGCTCGAAAACACCACAAAGGTT 359
Query 423 TTCAAGCTGCATATGGAAGAGCTTCGAGGAATGCAAGAACAGATATCCAAACGCGATAAC 482
|||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct 360 TTCAAGCTACATATGGAAGAGCTCCGGGGAATGCAAGAACAGATATTCAAACGCGATAAC 419
Query 483 GAGATCAAACTCTTAGAAGCTATAATCCAAACGCTCGGCGGCAAAGAGCGGTTGGGAAAA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGATCAAACTCTTAGAAGCTATAATCCAAACGCTCGGCGGCAAAGAGCGGTTGGGAAAA 479
Query 543 AGCGACGTGAATGGATGATGATGATGCGTTTTTT-CACTTG 582
|| | ||||||||||||||||||||||||||||| ||||||
Sbjct 480 AGTGGCGTGAATGGATGATGATGATGCGTTTTTTTCACTTG 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26228566896
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5