BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64190.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496617 jgi|Araly1|496617|fgenesh2_kg.8__2433__AT5G64190.1 2420 0.0
> Ahg496617 jgi|Araly1|496617|fgenesh2_kg.8__2433__AT5G64190.1
Length=1568
Score = 2420 bits (1310), Expect = 0.0
Identities = 1477/1559 (95%), Gaps = 5/1559 (0%)
Strand=Plus/Plus
Query 8 AGAAGTTCCCTGATGTATTCACTTGGATACAAAACATCCCACAGATCACCAAATGGCGCA 67
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 14 AGAAGTTCCCTGATGTATTCACTTGGATACAGAACATCCCACAAATCACCAAATGGCGCA 73
Query 68 CAACTTCTCTTCCCTTTTGCATTTGCCCTTCAACTTCTGATTTTCCAAATTCAACCCTAA 127
||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 74 CAACTTCTCTTTCCTTTTGCATTTGCCCTTCAACTTCTGATTTTCCGAATTCAAACCTAA 133
Query 128 ATCTCACAGCACAAAAGAGCCCTAGCCCTAAAGTTGTCACTTTCTCCATCATCGTCCAAT 187
|||||| ||||||||||| ||||| ||||| |||| |||||||||||||||||||||||
Sbjct 134 ATCTCATAGCACAAAAGAACCCTAACCCTACAGTTCCCACTTTCTCCATCATCGTCCAAT 193
Query 188 CCAATAATCATTCTCCTTTGTATCTTTGGACCACTAAACAAGAGCTCAGCATCAACCCAA 247
| ||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||
Sbjct 194 CTAATAATCATTCTCCTTTGTATCTTTGGACGACTAAACAGGACCTCAACATCAACCCAA 253
Query 248 ACTCACCAAACCCTTTCGATGAACTAACAATCATCTCTCTCCTCTTCAATTTCGTCGAAA 307
|||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct 254 ACTCACCAAACCCTTTCGATGAACAAACAATCGTCTCTTTGCTCTTCAATTTCGTCGAAT 313
Query 308 CTATCTTAACCTATACCTCTAATAGTTCCAACTATTCAACGATCAAAATCCCTAACTCCG 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 314 CTATCTTAACCTATACCTCTAATAGTTCCAACTATTCAACGATCAAAATCCCTAACCCCA 373
Query 368 ATTCATCCAAGATCGGCGGTCTTAAAGACATAGTCAACACCGTGATTCTCACTCTCTCGT 427
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 374 ATTCATCCAAGATCGACGGTCTTAAAGACATATTCAACGCCGTGATTCTCACTCTCTTGT 433
Query 428 TCGTTGTTTGCGTCTACGAAGCTCCTCTGTATCTCCGTGAAAACTGCCTCAATACCCTCA 487
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 434 TCGTCGTTTGCGTCTACGAAGCTCCTTTGTATCTCCGTGAAAACTGCCTCAATACGCTCA 493
Query 488 AGAACCATTTGATTACTTGTCATACACGGCGAGCTACTATATCTCTGATGAAGCTTCTAG 547
||||||||||| ||||||||||| |||||| ||| || |||||||||||||||||||||
Sbjct 494 AGAACCATTTGGTTACTTGTCATGCACGGCAAGCGACCGTATCTCTGATGAAGCTTCTAG 553
Query 548 GGTCTAATTTGGAAGAGCAGTGGATGAGAACAGTGAATCTAGCGTTTACAAATTGGATCA 607
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 554 GGTCTAATTTGGAAGAGCAGTGGATGAGAACGGTGAATCTAGCGTTGACAAATTGGATCA 613
Query 608 TCGAGCAGCGTCGTAGTCAGTCAACCAAGATCACAACAACTCCTTTGTTCTCTTACGCTG 667
| |||||||||||| || |||| |||||| ||||||||||||||||||||||||||||
Sbjct 614 TTGAGCAGCGTCGTTGTGAGTCCACCAAG---ACAACAACTCCTTTGTTCTCTTACGCTG 670
Query 668 TTTCGGCTTATGGATTGTGGAAAGTGCAATTGTATTGTCCCGTTGAAGCCATGGAAGTAG 727
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 671 TTTCGGCTTATGGATTGTGGAAAGTGCAATTGTATTGTCCGGTTGAAGCCATGGAAATAG 730
Query 728 AGAGATCGAGCAACCCAACGGCTGATTCGAGATTGTTGTTCTCTCTCAAGTTTAATCAGC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AGAGATCGAGCAACCCAACGGCTGATTCGAGATTGTTGTTCTCTCTCAAGTTTAATCAGC 790
Query 788 TTGAAGGTGTGATGCAGTTCAATCACAAAGTTGTAGTTAGAGACAATTGGATCGATGTGA 847
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 791 TTGAAGGTGTTATGCAATTCAATCACAAAGTTGTAGTTAGAGACAAGTGGATCGATGTGA 850
Query 848 TCGTGAAGATAGACAACATCAGATACGATGTAATAAAGCTTGTAAACGAGAAACTGATGT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TCGTGAAGATAGACAACATCAGATACGATGTAATAAAGCTTGTAAACGAGAAACTGATGT 910
Query 908 CGAGAAGAGGAGCAGGGGAGCACGAAAAGCATTTCCCATCAAGGATCTCTCTGCAACTAA 967
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CGAGAAGAGGAGCAGGAGAGCACGAAAAGCATTTCCCATCAAGGATCTCTCTGCAACTAA 970
Query 968 CTCCTACTCTCCAAACCGATTTCATTAGCGTTTCGGTTAGCAAATCATCAAACAATCCGG 1027
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 971 CTCCAACTCTCCAAACCGATTTCATAAGCGTTTCGGTTAGCAAATCATCAAACAATCCAG 1030
Query 1028 GAAGAGAGTTTGAAGTCGAGAGATCTATTGAAGGCTCGTTCGATCCACCAAACTCACTAG 1087
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1031 GACGAGAGTTTGAAGTCGAGAGATCTATCGAAGGCTCATTCGATCCACCAAACTCACTAG 1090
Query 1088 GCTTAAGAGTTGCTGGACGAGAAGCCTCAACCATGACAATGACCCCGTGGAAATTAGAGC 1147
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1091 GCTTAAGAGTCGCTGGACGAGAAGCCTCGACCATGACAATGACCCCATGGAAATTCGAGC 1150
Query 1148 AATCTGTGCTCGGCTACACAGCTAATCTAAACTGGATCTTGTATGATAGCAGCGTTGGAG 1207
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1151 AATCTGTGCTCGGCTACACAGCTAATCTAAACTGGATCTTGTACGATAGCAGCGTTGGAG 1210
Query 1208 GAAGAGAGGTTTTTTCGACAAAGCCGTCACGGTTTTCAATAATGAGCCCAAGGTCTTGGT 1267
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1211 GAAGAGAGGTTTTTTCGACAAAGCCCTCACGGTTTTCGATAATGAGCCCAAGGTCTTGGT 1270
Query 1268 TTAAGGATAGGTATGCAAGAGCGTATCGGTCATTTACGAGGAGAGGAGGTGTGATATTTG 1327
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1271 TTAAGGATCGGTATGCAAGGGCGTATCGGTCATTTACGAGGAGAGGAGGAGTGATATTTG 1330
Query 1328 CAGGGGACGAGTATGGAGAGAGTGTGGTGTGGAAGATTGGAAAAGGAGCATTGGGGGGAA 1387
||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 1331 CAGGGGATGAGTATGGAGAGAGTGTGGTGTGGAAAATTGGGAAAGGAGCATTGGGGAGAA 1390
Query 1388 CAATGGAGTGGGAGATTAAAGGGTTTATTTGGTTGACTTACTGGCCAAATAAGTACAAGA 1447
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1391 CAATGGAGTGGGAGATTAAAGGGTTTATTTGGTTGACATATTGGCCAAATAAGTATAAGA 1450
Query 1448 CTTTTTACCATGAGACTCGTAGATTGGAGTTTACACAGCTTCTTAATCTCACCATTGCTT 1507
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CTTTTTACCATGAGACTCGGAGATTGGAGTTTACACAGCTTCTTAATCTCACCATTGCTT 1510
Query 1508 AACTTTAAACAAA-AACATGTTATTACTTCTTTGTGATCTCAACTTTACATTGGTAAAG 1565
||| | |||| || |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 1511 AACCT-AAACCAAGAACATGTTATTACTTCTTTGTGATTTAAACTTTACCTTGGTAAAG 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5