BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64200.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496619 jgi|Araly1|496619|fgenesh2_kg.8__2435__AT5G64200.1 1847 0.0
Ahg952095 jgi|Araly1|952095|scaffold_37200001.1 448 7e-125
> Ahg496619 jgi|Araly1|496619|fgenesh2_kg.8__2435__AT5G64200.1
Length=1314
Score = 1847 bits (1000), Expect = 0.0
Identities = 1193/1280 (93%), Gaps = 37/1280 (3%)
Strand=Plus/Plus
Query 60 CTCCCAATTTCTCCGCCGGCGGGAAAACCATGTCGCACTTCGGAAGGTCAGGTCCACCGG 119
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 37 CTCCCAGTCTCTCCGCCGGCGGGAAAACTATGTCGCACTTCGGAAGGTCAGGTCCACCGG 96
Query 120 ATATCAGCGACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATG 179
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 97 ATATCAGCGACACCTACTCGCTTCTCGTCCTTAACATAACCTTCCGTACGACTGCTGATG 156
Query 180 ATCTCTATCCTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATC 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 157 ATCTCTATCCTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTCTTTATTCCCAGAGATC 216
Query 240 GAAGGACTGGTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 217 GAAGGACTGGTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGATGAAGCTC 276
Query 300 ACAAAGCAGTGGAAAGGCTTGATGGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGT 359
|||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 277 ACAAAGCAGTGGAAAGGCTTGATGGAAGGGTTGTTGATGGCCGAGAGATAACTGTTCAGT 336
Query 360 TTGCGAAATATGGGCCAAATGCTGAAAAAATTTCCAAAGGAAGAGTTGTGGAACCACCGC 419
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 337 TTGCGAAATATGGGCCAAATGCTGAAAAGATTTCCAAAGGAAGGGTTGTGGAACCACCAC 396
Query 420 CGAAGTCACGAAGATCTAGAAGCCGTAGTCCTAGGCGGAGTCGTAGTCCTAGGAGGAGCC 479
| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 397 CAAAGTCACGAAGATCGAGAAGCCGTAGTCCTAGGAGGAGTCGTAGTCCTCGGAGGAGCC 456
Query 480 GTAGCCCGCCTAGACGTCGTAGTCCCAGAAGAAGCCGCAGTCCTCGTAGGAGGTCCCGAG 539
| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 457 GAAGCCCGCCTAGACGCCGTAGTCCTAGAAGAAGCCGTAGTCCTCGTAGGAGGTCCCGAG 516
Query 540 ATGACTATAGGGAAAAAGACTACCGGAAGCGGAGCAGGAGCAGAAGCTATGACAGGCGTG 599
|||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 517 ATGATTACAGGGAAAAAGACTACCGGAAGAGGAGCAGGAGCAGAAGCTATGAGAGGCGTG 576
Query 600 AAAGGCATGAGGAGAAGGATAGAGATCATCGTCGTCGCACTAGGTCTCGTAGTGCCAGCC 659
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 577 AAAGGCATCAGGAGAAGGATAGAGATCATCGTCGTCGAACTAGGTCTCGTAGTGCCAGCC 636
Query 660 CAGATGAAAAACGCAGAGTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTT 719
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 637 TAGATGACAAACGCAGAGTCAGAGGCCGTTATGATGATGAGAGCCGCAGTCACAGTCGCT 696
Query 720 CCTTGAGTGCATCTCCTGCTCG-C-C-G---CAGCCCTAGAAGTTCCTCCCCACAGAAAA 773
|||||||||||||||||||||| | | | |||||||||||||||||||||||| ||||
Sbjct 697 CCTTGAGTGCATCTCCTGCTCGCCGCAGCCTCAGCCCTAGAAGTTCCTCCCCACAAAAAA 756
Query 774 CCTCTCCTGCTAGAGAAGTTTCTCCTGATAAGCGTAGCAATGAGAGGTCTCCATCTCCTC 833
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CCTCTCCTCCTAGAGAAGTTTCTCCTGATAAGCGTAGCAATGAGAGGTCTCCATCTCCTC 816
Query 834 GTCGCAGCCTCAGCCCAAGAAGCCC-TGCTTTGCAAAAGGCCTCTCCTTCTAAGGAGATG 892
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 817 GTCGCAGCCTCAGCCCAAGAAGCCCAT-CTTTGCAAAAGGCCTCTCCTTCTAAGGAGGTG 875
Query 893 TCTCCTGAAAGGCGTAGCAATGAGAGGTCCCCATCTCCTGGTAGCCCTGCTCCTCTGCGC 952
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||
Sbjct 876 TCTCCTGAAAGGCGTAGCAATGAGAGGTCCCCGTCTCCTGGTAGCCCTTCTCCCCTGGGC 935
Query 953 AAAGTTGATGCTGCTTCTCGAAGTCAATCTCCTTATGCTGCGGAATGACTGCAGCCACTT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 AAAGTTGATGCTGCTTCTCGAAGTCAATCTCCTTATGCTGCGGAATGACTGCAGCCACTT 995
Query 1013 GTGAAAGTGATACGGTGTATGATGAAAAACACGTTTGCTTGTACTGATGATGTTTCATCA 1072
|||||| ||| | | | | |||||||||||||||||||||||||||||||
Sbjct 996 GTGAAA-TGA-A------A--A--A----CACGTTTGCTTGTACTGATGATGTTTCATCA 1039
Query 1073 TTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCTCTGGTTCGAGAAAAG 1132
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TCAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCTCTGGTTCGAGAAAAG 1099
Query 1133 AATTGACTGGGAAGATGGCACAACCATGTTGAGATTGTAGCTGTTGATGGCTGTTTATGA 1192
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1100 AATTGACTTGGAAGATGGCACAACCATGTTGAGATTGTAGCTGTTGATG-CTGTTTATGA 1158
Query 1193 AACTGTAGATGATCGATGCTGTTTATGAAACCGTAGATGATCGATGCTGGTCACAGCTAT 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1159 AACTGTAGATGATCGATGCTGTTTATGAAACCGTAGATGTTCGATGCTGGTCACAGCAAT 1218
Query 1253 CTGCTTTAACTAGTATCATCCTTGT-GTCGCTAATGCTTA----GAAGGGC-TGGTTCGT 1306
|||||| |||| | || |||| | | | |||||||| ||||||| ||| ||||
Sbjct 1219 CTGCTTAAACTCCCCT--TC-TTGTTGCC-C-AATGCTTACTTAGAAGGGCCTGGCTCGT 1273
Query 1307 TGAGTTTTCAATCTTAAGTT 1326
| |||||||||||| |||||
Sbjct 1274 TTAGTTTTCAATCT-AAGTT 1292
> Ahg952095 jgi|Araly1|952095|scaffold_37200001.1
Length=393
Score = 448 bits (242), Expect = 7e-125
Identities = 255/261 (98%), Gaps = 1/261 (0%)
Strand=Plus/Plus
Query 69 TCTCCGCCGGCGGGAAAACCATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG 128
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCTCCGCCGGCGGGAAAACTATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG 62
Query 129 ACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATGATCTCTATC 188
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 63 ACACCTACTCGCTTCTCGTCCTTAACATAACCTTCCGTACGACTGCTGATGATCTCTATC 122
Query 189 CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATCGAAGGACTG 248
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 123 CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTCTTTATTCCCAGAGATCGAAGGACTG 182
Query 249 GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTCACAAAGCAG 308
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 183 GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGATGAAGCTCACAAAGCAG 242
Query 309 TGGAAAGGCTTGATGG-AAGA 328
|||||||||||||||| ||||
Sbjct 243 TGGAAAGGCTTGATGGTAAGA 263
Score = 78.7 bits (42), Expect = 1e-13
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 323 GGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGTTTGCGAAATAT 370
||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 346 GGAAGAGTTGTCGATGGCCGAGAAATAACTGTTCAGTTTGCGAAATAT 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5