BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64200.1 Length=1457 Score E Sequences producing significant alignments: (Bits) Value Ahg496619 jgi|Araly1|496619|fgenesh2_kg.8__2435__AT5G64200.1 1847 0.0 Ahg952095 jgi|Araly1|952095|scaffold_37200001.1 448 7e-125 > Ahg496619 jgi|Araly1|496619|fgenesh2_kg.8__2435__AT5G64200.1 Length=1314 Score = 1847 bits (1000), Expect = 0.0 Identities = 1193/1280 (93%), Gaps = 37/1280 (3%) Strand=Plus/Plus Query 60 CTCCCAATTTCTCCGCCGGCGGGAAAACCATGTCGCACTTCGGAAGGTCAGGTCCACCGG 119 |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 37 CTCCCAGTCTCTCCGCCGGCGGGAAAACTATGTCGCACTTCGGAAGGTCAGGTCCACCGG 96 Query 120 ATATCAGCGACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATG 179 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 97 ATATCAGCGACACCTACTCGCTTCTCGTCCTTAACATAACCTTCCGTACGACTGCTGATG 156 Query 180 ATCTCTATCCTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATC 239 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 157 ATCTCTATCCTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTCTTTATTCCCAGAGATC 216 Query 240 GAAGGACTGGTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 217 GAAGGACTGGTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGATGAAGCTC 276 Query 300 ACAAAGCAGTGGAAAGGCTTGATGGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGT 359 |||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| Sbjct 277 ACAAAGCAGTGGAAAGGCTTGATGGAAGGGTTGTTGATGGCCGAGAGATAACTGTTCAGT 336 Query 360 TTGCGAAATATGGGCCAAATGCTGAAAAAATTTCCAAAGGAAGAGTTGTGGAACCACCGC 419 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 337 TTGCGAAATATGGGCCAAATGCTGAAAAGATTTCCAAAGGAAGGGTTGTGGAACCACCAC 396 Query 420 CGAAGTCACGAAGATCTAGAAGCCGTAGTCCTAGGCGGAGTCGTAGTCCTAGGAGGAGCC 479 | |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| Sbjct 397 CAAAGTCACGAAGATCGAGAAGCCGTAGTCCTAGGAGGAGTCGTAGTCCTCGGAGGAGCC 456 Query 480 GTAGCCCGCCTAGACGTCGTAGTCCCAGAAGAAGCCGCAGTCCTCGTAGGAGGTCCCGAG 539 | |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| Sbjct 457 GAAGCCCGCCTAGACGCCGTAGTCCTAGAAGAAGCCGTAGTCCTCGTAGGAGGTCCCGAG 516 Query 540 ATGACTATAGGGAAAAAGACTACCGGAAGCGGAGCAGGAGCAGAAGCTATGACAGGCGTG 599 |||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 517 ATGATTACAGGGAAAAAGACTACCGGAAGAGGAGCAGGAGCAGAAGCTATGAGAGGCGTG 576 Query 600 AAAGGCATGAGGAGAAGGATAGAGATCATCGTCGTCGCACTAGGTCTCGTAGTGCCAGCC 659 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 577 AAAGGCATCAGGAGAAGGATAGAGATCATCGTCGTCGAACTAGGTCTCGTAGTGCCAGCC 636 Query 660 CAGATGAAAAACGCAGAGTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTT 719 |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 637 TAGATGACAAACGCAGAGTCAGAGGCCGTTATGATGATGAGAGCCGCAGTCACAGTCGCT 696 Query 720 CCTTGAGTGCATCTCCTGCTCG-C-C-G---CAGCCCTAGAAGTTCCTCCCCACAGAAAA 773 |||||||||||||||||||||| | | | |||||||||||||||||||||||| |||| Sbjct 697 CCTTGAGTGCATCTCCTGCTCGCCGCAGCCTCAGCCCTAGAAGTTCCTCCCCACAAAAAA 756 Query 774 CCTCTCCTGCTAGAGAAGTTTCTCCTGATAAGCGTAGCAATGAGAGGTCTCCATCTCCTC 833 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 757 CCTCTCCTCCTAGAGAAGTTTCTCCTGATAAGCGTAGCAATGAGAGGTCTCCATCTCCTC 816 Query 834 GTCGCAGCCTCAGCCCAAGAAGCCC-TGCTTTGCAAAAGGCCTCTCCTTCTAAGGAGATG 892 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 817 GTCGCAGCCTCAGCCCAAGAAGCCCAT-CTTTGCAAAAGGCCTCTCCTTCTAAGGAGGTG 875 Query 893 TCTCCTGAAAGGCGTAGCAATGAGAGGTCCCCATCTCCTGGTAGCCCTGCTCCTCTGCGC 952 |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| || Sbjct 876 TCTCCTGAAAGGCGTAGCAATGAGAGGTCCCCGTCTCCTGGTAGCCCTTCTCCCCTGGGC 935 Query 953 AAAGTTGATGCTGCTTCTCGAAGTCAATCTCCTTATGCTGCGGAATGACTGCAGCCACTT 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 AAAGTTGATGCTGCTTCTCGAAGTCAATCTCCTTATGCTGCGGAATGACTGCAGCCACTT 995 Query 1013 GTGAAAGTGATACGGTGTATGATGAAAAACACGTTTGCTTGTACTGATGATGTTTCATCA 1072 |||||| ||| | | | | ||||||||||||||||||||||||||||||| Sbjct 996 GTGAAA-TGA-A------A--A--A----CACGTTTGCTTGTACTGATGATGTTTCATCA 1039 Query 1073 TTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCTCTGGTTCGAGAAAAG 1132 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 TCAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCTCTGGTTCGAGAAAAG 1099 Query 1133 AATTGACTGGGAAGATGGCACAACCATGTTGAGATTGTAGCTGTTGATGGCTGTTTATGA 1192 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1100 AATTGACTTGGAAGATGGCACAACCATGTTGAGATTGTAGCTGTTGATG-CTGTTTATGA 1158 Query 1193 AACTGTAGATGATCGATGCTGTTTATGAAACCGTAGATGATCGATGCTGGTCACAGCTAT 1252 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1159 AACTGTAGATGATCGATGCTGTTTATGAAACCGTAGATGTTCGATGCTGGTCACAGCAAT 1218 Query 1253 CTGCTTTAACTAGTATCATCCTTGT-GTCGCTAATGCTTA----GAAGGGC-TGGTTCGT 1306 |||||| |||| | || |||| | | | |||||||| ||||||| ||| |||| Sbjct 1219 CTGCTTAAACTCCCCT--TC-TTGTTGCC-C-AATGCTTACTTAGAAGGGCCTGGCTCGT 1273 Query 1307 TGAGTTTTCAATCTTAAGTT 1326 | |||||||||||| ||||| Sbjct 1274 TTAGTTTTCAATCT-AAGTT 1292 > Ahg952095 jgi|Araly1|952095|scaffold_37200001.1 Length=393 Score = 448 bits (242), Expect = 7e-125 Identities = 255/261 (98%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 69 TCTCCGCCGGCGGGAAAACCATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG 128 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3 TCTCCGCCGGCGGGAAAACTATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG 62 Query 129 ACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATGATCTCTATC 188 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 63 ACACCTACTCGCTTCTCGTCCTTAACATAACCTTCCGTACGACTGCTGATGATCTCTATC 122 Query 189 CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATCGAAGGACTG 248 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 123 CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTCTTTATTCCCAGAGATCGAAGGACTG 182 Query 249 GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTCACAAAGCAG 308 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 183 GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGATGAAGCTCACAAAGCAG 242 Query 309 TGGAAAGGCTTGATGG-AAGA 328 |||||||||||||||| |||| Sbjct 243 TGGAAAGGCTTGATGGTAAGA 263 Score = 78.7 bits (42), Expect = 1e-13 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 323 GGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGTTTGCGAAATAT 370 ||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 346 GGAAGAGTTGTCGATGGCCGAGAAATAACTGTTCAGTTTGCGAAATAT 393 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54507140595 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5