BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64210.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496620 jgi|Araly1|496620|fgenesh2_kg.8__2436__AT5G64210.1 1439 0.0
Ahg887721 jgi|Araly1|887721|Al_scaffold_0372_2 1064 0.0
> Ahg496620 jgi|Araly1|496620|fgenesh2_kg.8__2436__AT5G64210.1
Length=1068
Score = 1439 bits (779), Expect = 0.0
Identities = 973/1061 (92%), Gaps = 36/1061 (3%)
Strand=Plus/Plus
Query 26 CTTTACGAGTTCTGCTTGTCTGCGGCAGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 85
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 20 CTTTACGAGCTCTGCTTGTCTGCGGCGGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 79
Query 86 CCTCCACCTCTGTTATGAAAAGTCCGTATGAGATAACGGCACCGATGCGAATTCATGACT 145
|| || |||| |||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 80 CCGCCGCCTCCGTTATGAAAAGTCCGTATGAGAGAACGAAACCGATGCGAATTCATGATT 139
Query 146 GGTGCGGCGGTTTTGGCGATTTCAAGATCGGCTCTAAGCATGTGCAAGGAAATTTTAACT 205
|||||||| ||||||| ||||| ||||| || |||||||||||||||||| |||| || |
Sbjct 140 GGTGCGGCCGTTTTGGTGATTTTAAGATTGGTTCTAAGCATGTGCAAGGAGATTTCAAAT 199
Query 206 TGAGGTGGATGG-GTATGAGTTCTGCATCGGCGATGGAGAAGAAAGATGAAAATTTGACG 264
||||||||| || | |||||||||||||| |||| |||||| ||||||||||||| ||||
Sbjct 200 TGAGGTGGA-GGAGGATGAGTTCTGCATCAGCGACGGAGAATAAAGATGAAAATTCGACG 258
Query 265 GTAAAGAAGGGTCAAAACGGCGGGGGGTCAGTAGCGGTTCCAAGTTATTGGGGAATAGAG 324
|| ||||||| |||||| ||||| || || || |||||||||||||||||||||||||||
Sbjct 259 GTGAAGAAGGATCAAAATGGCGGTGGATCGGTGGCGGTTCCAAGTTATTGGGGAATAGAG 318
Query 325 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 378
Query 385 CCATGGGAGACTTATCAAGCAAATCTGTCGATAGATTTGAAGAAGCACCACGTTCCGAAG 444
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 379 CCATGGGAGACTTATCAAGCAAATTTGTCGATAGATTTGAAGAAGCACCACGTTCC---G 435
Query 445 AATATCGCCGACAAAGTCGCTTACCGGATTGTCAAGCTCCTCCGTATTCCCACCGATATA 504
| | |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 436 -A-A---CCGACAAAATCGCTTACCGGATAGTCAAGCTCCTCCGTATTCCCACAGATATA 490
Query 505 ---TT-------T-----T----TT-C-AGAGACGATATGGATGCAGAGCGATG--ATGC 541
|| | | || | | |||||||||||||||||||| ||| ||||
Sbjct 491 TTTTTCCAGGCATGACCCTCGCATTACAAAAGACGATATGGATGCAGAGCAATGATATGC 550
Query 542 TAGAGACAGTAGCTGCAGTACCAGGAATGGTTGGAGGAATGCTTCTTCACCTAAAATCAA 601
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 551 TAGAGACAGTAGCCGCAGTACCAGGAATGGTCGGAGGAATGCTTCTCCACCTAAAATCAA 610
Query 602 TCCGAAAATTCGAACATAGCGGCGGTTGGATCAAAGCATTACTCGAAGAAGCAGAGAACG 661
|||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 611 TCCGGAAATTCGAACATAGTGGCAGTTGGATCAAAGCATTACTAGAAGAAGCAGAGAACG 670
Query 662 AGAGGATGCATCTAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AGAGGATGCATCTAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTC 730
Query 722 TAGTGATGCTTGTTCAAGGAATATTCTTCAACTCTTTTTTCGTTTGTTACGTGATTTCCC 781
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |
Sbjct 731 TAGTGATGCTTGTTCAAGGAATATTC---AACTCTTTTCTCGTTTGTTACGTGATGTCGC 787
Query 782 CGCGGTTAGCTCATAGGGTCGTTGGATATTTAGAGGAAGAAGCTATACATTCTTACACCG 841
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 788 CGCGGTTAGCTCATCGGGTCGTTGGATATTTAGAAGAAGAAGCTATACATTCTTACACCG 847
Query 842 AGTTTCTTAAAGATATCGACAATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTA 901
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 848 AGTTTCTTAAAGATATCGACGATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTA 907
Query 902 TTGATTATTGGAGATTGCCTAAAGATGCTACGTTGAAAGATGTTGTAACGGTGATTCGTG 961
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 908 TTGATTATTGGAGATTGCCTAAAGATGCTACGTTGAAAGATGTCGTCACAGTGATTCGTG 967
Query 962 CTGATGAAGCTCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CTGATGAAGCTCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAA 1027
Query 1022 AAGAGTTGCGAGAAGCAGCAGCTCCGATTGGTTATCACTAA 1062
|||||||||||||||||| ||||||||||||||||||||||
Sbjct 1028 AAGAGTTGCGAGAAGCAGGAGCTCCGATTGGTTATCACTAA 1068
> Ahg887721 jgi|Araly1|887721|Al_scaffold_0372_2
Length=1005
Score = 1064 bits (576), Expect = 0.0
Identities = 717/782 (92%), Gaps = 21/782 (3%)
Strand=Plus/Plus
Query 26 CTTTACGAGTTCTGCTTGTCTGCGGCAGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 85
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 20 CTTTACGAGCTCTGCTTGTCTGCGGCGGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 79
Query 86 CCTCCACCTCTGTTATGAAAAGTCCGTATGAGATAACGGCACCGATGCGAATTCATGACT 145
|| || |||| |||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 80 CCGCCGCCTCCGTTATGAAAAGTCCGTATGAGAGAACGAAACCGATGCGAATTCATGATT 139
Query 146 GGTGCGGCGGTTTTGGCGATTTCAAGATCGGCTCTAAGCATGTGCAAGGAAATTTTAACT 205
|||||||| ||||||| ||||| ||||| || |||||||||||||||||| |||| || |
Sbjct 140 GGTGCGGCCGTTTTGGTGATTTTAAGATTGGTTCTAAGCATGTGCAAGGAGATTTCAAAT 199
Query 206 TGAGGTGGATGG-GTATGAGTTCTGCATCGGCGATGGAGAAGAAAGATGAAAATTTGACG 264
||||||||| || | |||||||||||||| |||| |||||| ||||||||||||| ||||
Sbjct 200 TGAGGTGGA-GGAGGATGAGTTCTGCATCAGCGACGGAGAATAAAGATGAAAATTCGACG 258
Query 265 GTAAAGAAGGGTCAAAACGGCGGGGGGTCAGTAGCGGTTCCAAGTTATTGGGGAATAGAG 324
|| ||||||| |||||| ||||| || || || |||||||||||||||||||||||||||
Sbjct 259 GTGAAGAAGGATCAAAATGGCGGTGGATCGGTGGCGGTTCCAAGTTATTGGGGAATAGAG 318
Query 325 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 378
Query 385 CCATGGGAGACTTATCAAGCAAATCTGTCGATAGATTTGAAGAAGCACCACGTTCCGAAG 444
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 379 CCATGGGAGACTTATCAAGCAAATTTGTCGATAGATTTGAAGAAGCACCACGTTCCGAA- 437
Query 445 AATATCGCCGACAAAGTCGCTTACCGGATTGTCAAGCTCCTCCGTATTCCCACCGATATA 504
| | |||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 438 -----C-C-GACAAAATCGCTTACCGGATAGTCAAGCTCCTCCGTATTCCCACAGATATA 490
Query 505 TTTTTTCAG--A-GAC------GATATGGATGCAGAGCGATGAT--GCTAGAGACAGTAG 553
||||| ||| | ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 491 TTTTTCCAGGCATGACCCTCACGATATGGATGCAGAGCAATGATATGCTAGAGACAGTAG 550
Query 554 CTGCAGTACCAGGAATGGTTGGAGGAATGCTTCTTCACCTAAAATCAATCCGAAAATTCG 613
| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 551 CCGCAGTACCAGGAATGGTCGGAGGAATGCTTCTCCACCTAAAATCAATCCGGAAATTCG 610
Query 614 AACATAGCGGCGGTTGGATCAAAGCATTACTCGAAGAAGCAGAGAACGAGAGGATGCATC 673
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 611 AACATAGTGGCGGTTGGATCAAAGCATTACTAGAAGAAGCAGAGAACGAGAGGATGCATC 670
Query 674 TAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTCTAGTGATGCTTG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTCTAGTGATGCTTG 730
Query 734 TTCAAGGAATATTCTTCAACTCTTTTTTCGTTTGTTACGTGATTTCCCCGCGGTTAGCTC 793
|||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 731 TTCAAGGAATATTCTTCAACTCTTTTCTCGTTTGTTACGTGATGTCGCCGCGGTTAGCTC 790
Query 794 AT 795
||
Sbjct 791 AT 792
Score = 355 bits (192), Expect = 3e-97
Identities = 205/211 (97%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 853 GATATCGACAATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTATTGATTATTGG 912
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GATATCGACGATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTATTGATTATTGG 854
Query 913 AGATTGCCTAAAGATGCTACGTTG-AAAGATGTTGTAACGGTGATTCGTGCTGATGAAGC 971
|||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct 855 AGATTGCCTAAAGATGCTACGTTGGAAAGATGTCGTCACAGTGATTCGTGCTGATGAAGC 914
Query 972 TCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAAAAGAGTTGCG 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAAAAGAGTTGCG 974
Query 1032 AGAAGCAGCAGCTCCGATTGGTTATCACTAA 1062
|||||||| ||||||||||||||||||||||
Sbjct 975 AGAAGCAGGAGCTCCGATTGGTTATCACTAA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5