BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64220.1
Length=3517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951243 jgi|Araly1|951243|scaffold_803130.1 5105 0.0
Ahg487754 jgi|Araly1|487754|fgenesh2_kg.6__888__AT5G09410.2 1541 0.0
> Ahg951243 jgi|Araly1|951243|scaffold_803130.1
Length=3229
Score = 5105 bits (2764), Expect = 0.0
Identities = 3080/3228 (95%), Gaps = 40/3228 (1%)
Strand=Plus/Plus
Query 36 TTTTGGGTTTATGTTCCATGGCGGATCGCGGATCTTTCGGATTTGCTCCTCGATTAGATA 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTTTGGGTTTATGTTCCATGGCGGATCGCGGATCTTTCGGATTTGCTCCTCGATTAGATA 63
Query 96 TCAAGCAATTGCTGTCAGAAGCACAACACAGGTGGCTGAGACCTGCTGAGATTTGTGAAA 155
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 64 TCAAGCAGTTGCTGTCAGAAGCACAACATAGGTGGCTGAGACCTGCTGAGATTTGTGAAA 123
Query 156 TTCTTCGGAATCATCAGAAGTTTCATATTGCGTCAGAGCCTCCCAACCGACCACCCAGTG 215
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 124 TTCTTCGGAATCACCAGAAGTTTCATATTGCTTCGGAGCCTCCCAACCGACCACCCAGTG 183
Query 216 GTTCACTCTTTCTCTTCGATAGGAAGGTGCTCAGATATTTCCGAAAAGACGGGCACAATT 275
||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 184 GTTCACTCTTTCTATTTGATAGGAAGGTGCTCAGATATTTCCGAAAAGATGGGCACAACT 243
Query 276 GGAGGAAGAAGAAAGATGGGAAAACAGTGAAAGAGGCTCACGAAAAGCTGAAGGTAGGAA 335
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 244 GGAGGAAGAAGAAAGATGGGAAAACGGTGAAAGAGGCTCACGAAAAGCTCAAGGTAGGAA 303
Query 336 GCATTGATGTGTTACATTGTTACTATGCACATGGAGAAGATAATGAGAACTTCCAGAGGC 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCATTGATGTGTTACATTGTTACTATGCACATGGAGAAGATAATGAGAACTTCCAGAGGC 363
Query 396 GGTGCTACTGGATGCTTGAACAGGATCTGATGCACATTGTTTTCGTTCACTACTTGGAGG 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGTGCTACTGGATGCTTGAACAGGATCTGATGCACATTGTTTTCGTTCACTACTTGGAGG 423
Query 456 TTAAGGGTAACCGAATGAGTACCAGTGGAACTAAAGAAAACCATTCAAATTCTCTGAGTG 515
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 424 TTAAGGGTAACCGGATGAGTACCAGTGGAACTAAAGAAAACCATTCAAATTCTTTGAGTG 483
Query 516 GCACGGGTTCTGTAAATGTTGATTCCACAGCAACCCGATCCAGCATATTGTCACCATTAT 575
|||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 484 GCACTGGTTCTGTGAATTTTGATTCAACAGCAACCCGATCCAGCATATTGTCACCATTAT 543
Query 576 GTGAAGATGCTGATTCTGGGGATAGTCGTCAAGCAAGTTCCAGTTTGCAACAAAATCCTG 635
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 544 GTGAAGATGCTGATTCTGGGGATAGCCGTCAAGCAAGTTCCAGTTTGCAACAAAATCCTG 603
Query 636 AACCTCAAACTGTTGTTCCTCAGATTATGCATCATCAGAATGCTAGCACAATCAATTCTT 695
||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 604 AACCTCAAACTGTTGTTCCTCAGATAATGCATCATCAGAATGCTAACACAATGAATTCTT 663
Query 696 ACAATACAACCTCTGTTTTGGG--A---A-A----T---CG--AG---ATGG--TTGG-A 734
| ||||| |||||||||||||| | | | | || || ||| |||| |
Sbjct 664 ATAATACGACCTCTGTTTTGGGAAATCGAGATGGTTGGACGTCAGCTCCTGGCATTGGAA 723
Query 735 -CG--T--CA-GCTCATGGGAACAGGGTCAAAGGAAGTAACTCCCAAAGATCAGGTGATG 788
| | || | |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 724 TTGTTTCGCAGGTTCATGGGAACAGAGTCAAAGAAAGTAACTCCCAAAGATCAGGTGATG 783
Query 789 TCCCAGCATGGGATGCTTCCTTTGAGAATTCATTGGCAAGATACCAGAATCTACCTTATA 848
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 784 TCCCAGCATGGGATGCTTCCTTTGAGAATTCATTGGCAAGATGCCAGAATCTACCTTATA 843
Query 849 ATGCTCCGTTGACTCAGACACAGCCTTCTACTTTTGGTTTGATCCCCATGGAAGGGAAAA 908
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 844 ATGCTCCGTTGACTCAGACACAGCCTTCTAATTTTGGTTTGATACCCATGGAAGGGAAAA 903
Query 909 CAGAGAAAGGTTCCCTGTTAACGTCAGAGCATCTTAGAAATCCTCTTC-AAAGTCAAGTA 967
||||||||||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||
Sbjct 904 CAGAGAAAGGTTCCCTGTTAACGGCAGAGCATCTGAGAGATCCTCTTCGAAA-TCAAGTA 962
Query 968 AATTGGCA---G------ACTCCTGTTCAGGAAAGCGTGCCATTGCAAAAATGGCCCATG 1018
|||||||| | | |||||||||||||||||||||||||||||| ||||| |||
Sbjct 963 AATTGGCAGTTGATATATATTCCTGTTCAGGAAAGCGTGCCATTGCAAAAGTGGCCTATG 1022
Query 1019 GATTCGCATTCTGGAATGACTGATGCTACTGATCTTGCCTTATTTGGGCAAGGAGCACAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GATTCGCATTCTGGAATGACTGATGCTACTGATCTTGCCTTATTTGGGCAAGGAGCACAT 1082
Query 1079 GAAAATTTTGGGACATTTTCCAGTCTTCTTGGTAGTCAAGATCAACAGTCTAGTAGTTTC 1138
|||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||
Sbjct 1083 GAAAATTTTGGGACATTTTCCAGTCTTCTTGGCAGTCAAAATCAGCAGCCTAGTAGTTTT 1142
Query 1139 CAAGCTCCTTTCACAAATAATGAAGCAGCATATATACCTAAATTAGGCCCCGAGGATCTT 1198
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CAAGCTCCTTTTACAAATAATGAAGCAGCATATATACCTAAATTAGGCCCCGAGGATCTT 1202
Query 1199 ATATATGAAGCAAGTGCAAATCAAACACTACCTCTTAGAAAAGCATTGTTaaaaaaaGAG 1258
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 1203 ATATATGAAGCAAGTGCTAACCAAACGCTACCTCTTAGAAAAGCATTGTTAAAAAAAGAG 1262
Query 1259 GATAGTTTGAAAAAGGTTGACAGTTTCTCTCGGTGGGTTAGTAAAGAACTTGGGGAGATG 1318
||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 1263 GATAGCTTGAAAAAGGTTGACAGTTTTTCTCGGTGGGTTAGTCAAGAACTTGGGGAAATG 1322
Query 1319 GAAGACTTGCAGATGCAATCTTCATCTGGAGGTATTGCATGGACTTCTGTTGAATGTGAA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GAAGACTTGCAGATGCAATCTTCATCTGGAGGTATTGCATGGACTTCTGTTGAATGTGAA 1382
Query 1379 AACGCAGCAGCTGGGTCTTCCTTAAGTCCTTCTCTGTCCGAGGATCAGCGCTTCACTATG 1438
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AATGCAGCAGCTGGGTCTTCCTTAAGTCCTTCTCTGTCCGAGGATCAGCGCTTCACTATG 1442
Query 1439 ATCGACTTTTGGCCCAAATGGACTCAGACAGACTCAGAAGTTGAGGTAATGGTTATCGGG 1498
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1443 ATTGACTTTTGGCCCAAATGGACTCAGACAGACTCAGAAGTTGAGGTAATGGTTATTGGG 1502
Query 1499 ACATTTCTGTTGAGTCCTCAGGAAGTAACTAGCTATAGCTGGTCATGCATGTTTGGAGAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ACATTTCTGTTGAGTCCTCAGGAAGTAACTAGCTATAGCTGGTCATGCATGTTTGGAGAA 1562
Query 1559 GTGGAGGTTCCGGCTGATATTTTAGTAGATGGTGTTCTTTGTTGTCATGCTCCGCCACAT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 GTGGAGGTTCCGGCTGATATTTTAGTAGATGGTGTTCTTTGTTGTCATGCTCCGCCACAT 1622
Query 1619 GAAGTCGGTCGAGTCCCGTTCTATATAACATGTTCTGACAGATTTTCTTGCAGTGAAGTA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 GAAGTCGGTCGAGTCCCGTTCTATATAACATGTTCTGACAGATTTTCTTGCAGTGAAGTA 1682
Query 1679 CGAGAATTCGATTTCCTTCCTGGGTCTACCAGAAAGTTAAATGCTACTGACATTTATGGT 1738
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1683 CGAGAATTCGATTTCCTTCCTGGGTCTACCACAAAGTTAAATGCTACTGACATTTATGGT 1742
Query 1739 GCCAATACAATTGAAACATCACTCCATTTGCGGTTTGAAAACTTGCTGGCTCTCAGATGT 1798
||||||||||||||||| ||||| ||| ||||||||||||| |||||||| ||||||| |
Sbjct 1743 GCCAATACAATTGAAACGTCACTTCATGTGCGGTTTGAAAATTTGCTGGCGCTCAGATCT 1802
Query 1799 TCTGTTCAGGAACACCATATATTTGAAAATGTTGGGGAGAAACGAAGAAAAATCAGCAAA 1858
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 TCTGTTCAGGAACACCATGTATTTGAAAATGTTGGGGAGAAACGAAGAAAAATCAGCAAA 1862
Query 1859 ATCATGTTGCTAAAGGATGAAAAAGAGCCTCCTCTCCCCGGAACAATTGAGAAAGATCTA 1918
|||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||
Sbjct 1863 ATCATGTTGCTAAAGGATGAGAAAGAGTCTCTTCTCCCCGGAACAGTTGAGAAAGATCTA 1922
Query 1919 ACAGAGCTGGAAGCAAAAGAGCGATTGATTAGGGAAGAGTTTGAAGATAAATTATATCTG 1978
||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 1923 GCAGAGCTGGAAGCAAAAGATCGACTGATTAGGGAAGAGTTTGAAGATAAATTATGTCTG 1982
Query 1979 TGGCTCATCCATAAGGTGACTGAAGAGGGCAAGGGTCCAAATATATTAGATGAAGATGGA 2038
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1983 TGGCTCATCCATAAGGTGACTGAAGAGGGCAAGGGTCCGAATATATTAGATGAAGATGGA 2042
Query 2039 CAGGGTGTTCTACACCTAGCCGCAGCGCTGGGGTATGATTGGGCGATAAAGCCAATCTTA 2098
||||||||||||||||| || ||||| || |||||||||||||| ||||||||||| |||
Sbjct 2043 CAGGGTGTTCTACACCTTGCTGCAGCTCTTGGGTATGATTGGGCAATAAAGCCAATTTTA 2102
Query 2099 GCAGCAGGAGTTAGCATCAACTTCCGCGATGCAAATGGGTGGTCTGCTCTTCACTGGGCT 2158
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 GCTGCAGGAGTTAGCATCAACTTCCGCGATGCAAATGGGTGGTCTGCTCTTCACTGGGCT 2162
Query 2159 GCATTCAGTGGCAGGGAGGATACTGTCGCTGTACTTGTCTCACTGGGTGCTGATGCTGGA 2218
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2163 GCATTCAGTGGCAGGGAGGATACTGTCGCTGTACTTGTCTCTCTGGGTGCTGATGCTGGA 2222
Query 2219 GCATTGGCGGACCCATCTCCAGAACATCCTTTGGGGAAAACAGCTGCTGACTTGGCTTAT 2278
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2223 GCATTGGCGGACCCATCTCCAGAACATCCTTTGGGTAAAACAGCTGCTGACTTGGCTTAT 2282
Query 2279 GGAAACGGACACAGGGGAATATCGGGTTTCCTTGCAGAGTCATCCCTCACTAGCTACCTT 2338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 GGAAACGGACACAGGGGAATATCGGGTTTCCTTGCAGAGTCATCCCTCACTAGCTACCTT 2342
Query 2339 GAAAAACTAACAGTGGACGCTAAGGAAAACAGCTCCGCTGACTCCTCTGGAGCAAAAGCT 2398
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2343 GAAAAACTAACAGTGGACGCTAAGGAAAACAGCTCTGCTGACTCCTCTGGAGCAAAAGCT 2402
Query 2399 GTTCTGACAGTAGCTGAGCGAACAGCTACTCCTATGAGTTATGGTGATGTACCAGAAACA 2458
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2403 GTTCTAACAGTAGCTGAGCGAACAGCTACTCCTATGAGTTATGGTGATGTACCAGAAACA 2462
Query 2459 CTTTCGATGAAGGATTCACTTACTGCTGTCTTAAATGCTACACAAGCAGCTGATCGTCTT 2518
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2463 CTTTCGATGAAGGATTCACTTACTGCTGTCTTTAATGCTACACAAGCAGCTGATCGTCTT 2522
Query 2519 CATCAAGTGTTCAGAATGCAGTCGTTCCAGCGGAAACAGCTCTCTGAACTTGGTGGCGAC 2578
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2523 CATCAAGTGTTCAGGATGCAGTCGTTCCAGCGGAAACAGCTCTCTGAACTTGGTGGCGAC 2582
Query 2579 AACAAATTCGATATATCCGATGAGTTAGCTGTGTCTTTTGCGGCTGCAAAGACTAAGAAG 2638
|| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2583 AAAAAATTTGATATATCCGATGAGTTAGCTGTTTCTTTTGCAGCTGCAAAGACTAAGAAG 2642
Query 2639 TCAGGACACAGTAGTGGTGCTGTTCATGCTGCTGCGGTTCAAATCCAGAAAAAATACCGT 2698
|||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 2643 CCAGGACACAGTAATGGTGCTGTTCATGCTGCTGCAGTTCAGATCCAGAAAAAATATCGT 2702
Query 2699 GGTTGGAAGAAGAGAAAGGAGTTCCTTCTGATCCGACAAAGAATCGTCAAGATTCAGGCT 2758
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2703 GGTTGGAAGAAGAGAAAGGAGTTCCTTCTGATCCGACAAAGAATTGTCAAGATTCAGGCT 2762
Query 2759 CATGTGAGAGGACATCAAGTCCGAAAACAATACCGAGCCATTATTTGGTCCGTAGGATTG 2818
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2763 CATGTGAGAGGACATCAAGTCCGAAAACAATACCGAGCCATAATTTGGTCCGTAGGATTG 2822
Query 2819 CTTGAGAAAATCATCTTGCGATGGAGGCGTAAAGGTAGTGGCTTACGCGGTTTCAAACGT 2878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2823 CTTGAGAAAATCATCTTGCGATGGAGGCGTAAAGGTAGTGGCTTACGCGGTTTCAAACGT 2882
Query 2879 GATACAATCAGCAAGCCAACAGAACCTGTATGTCCTGCCCCACAAGAAGATGATTATGAT 2938
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2883 GATACAATCACCAAGCCAACAGAACCTGTATGTCCTGCCCCTCAAGAAGATGACTATGAT 2942
Query 2939 TTTCTCAAGGAAGGAAGGAAACAAACAGAGGAAAGGCTTCAAAAGGCTCTAACCCGAGTG 2998
|||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 2943 TTTCTCAAGGAAGGAAGGAAACAAACCGAGGAAAGGCTTAAAAAGGCTCTAACTCGAGTG 3002
Query 2999 AAGTCTATGGCTCAATATCCAGAGGCACGGGCTCAATACCGTAGACTATTGACTGTCGTT 3058
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3003 AAGTCTATGGCTCAATATCCAGAGGCACGGGCTCAATACCGTAGACTGTTGACTGTCGTT 3062
Query 3059 GAAGGCTTCCGTGAGAACGAGGCTTCTTCTAGCTCGGCATTGAAAAACAACACAGAGGAA 3118
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 3063 GAAGGCTTCCGTGAGAACGAGGCATCTTCTAGCTCAGCTTTGAAAAACAACACAGAGGAA 3122
Query 3119 GCTGCAAATTACAACGAAGAAGACGATTTAATTGACATTGATTCTCTTTTGGATGACGAC 3178
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 3123 GCTGCAAACTACAACGAGGAAGACGATTTAATCGACATTGATTCTCTTTTGGATGACGAC 3182
Query 3179 ACTTTCATGTCTCTTGCATTTGAATGATGATCACTGCA-GCTGAGAAA 3225
|||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 3183 ACTTTCATGTCTCTTGCATTTGAATGATGATCACTGGAAG-TGAGAAA 3229
> Ahg487754 jgi|Araly1|487754|fgenesh2_kg.6__888__AT5G09410.2
Length=3262
Score = 1541 bits (834), Expect = 0.0
Identities = 1635/2010 (81%), Gaps = 102/2010 (5%)
Strand=Plus/Plus
Query 1238 AAAGCATTGTTaaaaaaaGAGGATAGTTTGAAAAAGGTTGACAGTTTCTCTCGGTGGGTT 1297
||| ||||||||| || || || ||||||||||| || || ||||| |||||||||| |
Sbjct 1177 AAATCATTGTTAAGAAGCGAAGAGAGTTTGAAAAAAGTCGATAGTTTTTCTCGGTGGGCT 1236
Query 1298 AGTAAAGAACTTGGGGAGATGGAAGACTTGCAGATGCAATCTTCATC-TGGAGGTATTGC 1356
|||||||||||||| |||||||| || ||||||||||| |||||| | ||||| ||||||
Sbjct 1237 AGTAAAGAACTTGGCGAGATGGAGGATTTGCAGATGCAGTCTTCA-CGTGGAGATATTGC 1295
Query 1357 ATGGACTTCTGTTGAATGTGAAAAC-GCAGCAGCTGGG-TCTTCCTTAAGTCCTTCTCTG 1414
|||||| |||||||||||| | || |||||||| ||| || ||||| || ||||||||
Sbjct 1296 ATGGACCACTGTTGAATGTG-AGACTGCAGCAGCCGGGATC-TCCTTGAGCCCTTCTCTC 1353
Query 1415 TCCGAGGATCAGCGCTTCACTATGA-TCGACTTTTGGCCCAAATG-GACTCAGACAGACT 1472
|| ||||||||||| ||||| || | | || |||||||| ||||| | | ||||| |||
Sbjct 1354 TCTGAGGATCAGCGTTTCACCAT-AGTTGATTTTTGGCCAAAATGCG-CACAGACTGACG 1411
Query 1473 CAGAAGTTGAGGTAATGGTTATCGGGACATTTCTG-TTGAGTCCTCAGGAAGTAACTAGC 1531
||||||| ||||| |||||||| |||||||||||| || ||||| || |||||||| |
Sbjct 1412 CAGAAGTGGAGGTCATGGTTATTGGGACATTTCTGCTT-AGTCCGCAAGAAGTAACAAAA 1470
Query 1532 TATAGCTGGTCATGCATGTTTGGAGAAGTGGAGGTTCCGGCTGATATTTTAGTAGATGGT 1591
|||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 1471 TATAACTGGTCATGCATGTTTGGTGAAGTGGAGGTTCCTGCTGAGATTTTAGTAGACGGC 1530
Query 1592 GTTCTTTGTTGTCATGCTCCGCCACATGA-AGTC-GGTCGAGT-CCCGTTCTATATAACA 1648
|||||||| ||||||||||| || ||| | || | |||| ||| ||| || ||| | |||
Sbjct 1531 GTTCTTTGCTGTCATGCTCCACCGCAT-ACAG-CTGGTCAAGTGCCC-TTTTATGTTACA 1587
Query 1649 TGTTCTGACAGATTTTCTTGCAGTGAAGTACGAGAATTCGATTTCCTTCCTGGGTCTA-C 1707
||||| |||||||| |||||||||||||||||||||| ||||||||| |||| |||| |
Sbjct 1588 TGTTCCAACAGATTTGCTTGCAGTGAAGTACGAGAATTTGATTTCCTTTCTGGTTCTACC 1647
Query 1708 CAGAAAGTTAAATGCTACTGACATTTATGGTGCCAATACAATTGAAACATCACTCCATTT 1767
|| ||| || |||||||||| |||||||| || |||||| |||| ||||||| || ||
Sbjct 1648 CAAAAAATT-GATGCTACTGATGTTTATGGTACCTATACAAATGAAGCATCACTTCAGTT 1706
Query 1768 GCGGTTTGAAAACTTGCTGGCTCTCAGATGTTCTGTTCAGGAACACCATATATTTGAAAA 1827
||||||||| || |||| |||| |||| || |||||| ||||| |||||||||||| |
Sbjct 1707 GCGGTTTGAGAAGATGCTTGCTCACAGAAATTTTGTTCACGAACATCATATATTTGAAGA 1766
Query 1828 TGTTGGGGAGAAACGAAGAAAAATCAGCAAAATCATGTTGCTAAAGGATGAAAAAGAGC- 1886
||||||||||||||||||||||||||| ||||| |||| |||||||| || ||||||
Sbjct 1767 TGTTGGGGAGAAACGAAGAAAAATCAGTAAAATTATGTCACTAAAGGAGGAGAAAGAGTA 1826
Query 1887 -CTCCTCTCCCCGGAACA-ATTGAGAAAGAT-CTAA-CAGAGCTGGAAGCAAAAG-AGC- 1940
||||| || ||| || || ||| |||| | || || | | ||| |||||| | |
Sbjct 1827 TCTCCTTTCTG-GGA-CATATC-AGAGAGATTC-AATCAAA-CAAGAACCAAAAGGA-CA 1880
Query 1941 GATTGATT-AGGGAAGAGTTTGAAGATA-AATTATATCTGTGGCTCATCCATAAGGTGAC 1998
| || || |||||| |||||||||| | || ||||| | |||||||||||||| |||||
Sbjct 1881 GCTT--TTCAGGGAACAGTTTGAAGA-AGAACTATATATATGGCTCATCCATAAAGTGAC 1937
Query 1999 TGAAGAGGGCAAGGGTCCAAATATATTAGATGAAGATGGACAGGGTGTTCTACACCTAGC 2058
||||||||| || |||||||| ||| | |||||||||||||||||| || ||||| | |
Sbjct 1938 TGAAGAGGGTAAAGGTCCAAACATACTGGATGAAGATGGACAGGGTATTTTACACTTTGT 1997
Query 2059 CGCAGCGCTGGGGTATGATTGGGCGATAA-AGCCAAT-CTTAGCAGCAGGAGTTAGCATC 2116
|||||||| ||||| |||||||| || | | || || || |||||| ||||||| |||
Sbjct 1998 TGCAGCGCTTGGGTACGATTGGGCCATTAGA-CCGATGCT-AGCAGCGGGAGTTAACATT 2055
Query 2117 AACTTCCGCGATGCAAATGGGTGGTCTGCTCTTCACTGGGCTGCATTCAGTGGCAGGGAG 2176
|||||||| ||||| ||||| |||||||| ||||| |||||||| || ||||||||||||
Sbjct 2056 AACTTCCGTGATGCCAATGGCTGGTCTGCCCTTCATTGGGCTGCGTTTAGTGGCAGGGAG 2115
Query 2177 GATACTGTCGCTGTACTTGTCTCACTGGGTGCTGATGCTGGAGCATTGGCGGACCCATCT 2236
|| ||||||||||| |||||||| || |||||||||||||| |||||| |||| ||||||
Sbjct 2116 GAAACTGTCGCTGTGCTTGTCTCTCTAGGTGCTGATGCTGGGGCATTGACGGATCCATCT 2175
Query 2237 CCAGAACATCCTTTGGGGAAAACAGCTGCTGACTTGGCTTATGGAAACGGACACAGGGGA 2296
||||| | ||| ||||| |||||||| ||||| |||||||| | ||| ||||||||||||
Sbjct 2176 CCAGAGCTTCCATTGGGTAAAACAGCAGCTGATTTGGCTTACGCAAATGGACACAGGGGA 2235
Query 2297 ATATCGGGTTTCCTTGCAGAGTCATCCCTCACTAGCTACCTTGAAAAACTAACAGTGGAC 2356
|| |||||||| ||||||||||| ||| | ||||| || |||||||| ||||||||||||
Sbjct 2236 ATTTCGGGTTTTCTTGCAGAGTCTTCCTTAACTAGTTATCTTGAAAAGCTAACAGTGGAC 2295
Query 2357 GCTAAGGAAAACAGCTCC-GCTGACTCCTCTGGAGCAAAAGCTGTTCTGACAGTAGCTGA 2415
| |||||||| ||| || || |||| ||||||||||||||||||| ||||| ||||
Sbjct 2296 TCAAAGGAAAATAGC-CCTGCCAACTCTTCTGGAGCAAAAGCTGTTCAAACAGTCTCTGA 2354
Query 2416 GCGAACAGCTACTCCTATGAGTTATGGTGATGTACCAGAAACACTTTCGATGAAGGATTC 2475
|||||| ||| |||||||||| ||||| ||||||||||||| |||||| ||||||||||
Sbjct 2355 GCGAACCGCTGCTCCTATGAGCTATGGCGATGTACCAGAAAAACTTTCCTTGAAGGATTC 2414
Query 2476 ACTTACTGCTGTCT-TAAATGCTACACAAGCAGCTGATCGTCTTCATCAAGTGTTCAGAA 2534
|||||| |||||| ||| |||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 2415 ACTTACCGCTGTCCGTAA-TGCTACACAAGCGGCTGATCGTCTCCATCAAGTATTCAGGA 2473
Query 2535 TGCAGTCGTTCCAGCGGAAACAGCTCTCTGA-ACTTGGTGGCGACAACAA-ATTCGATAT 2592
|||| || ||||||||||||||||| ||||| | | || | || |||| ||| |||||
Sbjct 2474 TGCAATCATTCCAGCGGAAACAGCTGTCTGATA-TCGGCGATGATGACAAGATT-GATAT 2531
Query 2593 ATCCGATGAGTTAGCTGTGTCTTTTGCGGCT--GCAAAGACTAAGAAGTC-AGGACACAG 2649
|||||| |||||||||| |||||||| || | ||| |||||||| || |||||| |
Sbjct 2532 CTCCGATAAGTTAGCTGTTTCTTTTGCAACTTTG-AAA-ACTAAGAA-TCTAGGACAGGG 2588
Query 2650 T-AGTGGTGCTGTTCA-TGCTGCTGCGGTTCAAATCCAGAAAAAATACCGTGGTTGGAAG 2707
| | || | || || | | ||||||| || |||||||| ||||| ||||||||||||
Sbjct 2589 TGA-TGTTTCTCTT-AGTTCTGCTGCCACCCATATCCAGAAGAAATATCGTGGTTGGAAG 2646
Query 2708 AAGAGAAAGGAGTTCCTTCTGATCCGACAAAGAATCGTCAAGATTCAGGCTCATGTGAGA 2767
|||||||| ||||| ||| | ||||||||||||||||| || ||||||||||||||||||
Sbjct 2647 AAGAGAAAAGAGTTTCTTTTAATCCGACAAAGAATCGTTAAAATTCAGGCTCATGTGAGA 2706
Query 2768 GGACATCAAGTCCGAAAACAATACCGAGCCATT-ATTTGGTCCGTAGGATTGCTTGAGAA 2826
|||||||| ||||| |||||||||||| | | | || ||||| || ||||| || || ||
Sbjct 2707 GGACATCAGGTCCGGAAACAATACCGAAC-AGTCATCTGGTCTGTGGGATTACTCGAAAA 2765
Query 2827 AATCATCTTGCGATGGAGGCGTAAAGGTAGTGGCTT-ACGCGG-TTTCAAACGTGATACA 2884
|||||| ||||| ||||| || ||||||| |||||| | | || ||| ||||| || ||
Sbjct 2766 AATCATTTTGCGTTGGAGACGCAAAGGTAATGGCTTGA-GAGGGTTT-AAACGCAATGCA 2823
Query 2885 ATCAGC-AAG-CC----AACAG-AACC---TGTAT--G-TCC-TG-CCC-CA--C--A-A 2923
|| || || || ||| | |||| ||||| | | || ||| || | | |
Sbjct 2824 GTC-GCCAAAACCGTGGAACCGGAACCACCTGTATCAGCTATATGTCCCACAATCCCACA 2882
Query 2924 G-AAGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAACAGAGGAAAGGCTTCAAAA 2982
| ||||||| ||||||| ||| || || ||||| ||||||||||||||||||||| | ||
Sbjct 2883 GGAAGATGAGTATGATTATCTTAAAGAGGGAAGAAAACAAACAGAGGAAAGGCTTGAGAA 2942
Query 2983 GGCTCTAACCCGAGTGAAGTCTATGGCTCAATATCCAGAGGCACGGGCTCAATACCGTAG 3042
|||||| || || |||||||| |||| |||||| ||||| ||||||| ||||||||||||
Sbjct 2943 GGCTCTGACTCGGGTGAAGTCGATGGTTCAATACCCAGAAGCACGGGATCAATACCGTAG 3002
Query 3043 ACTATTGACTGTCGTTGAAGGCTTCCGTGAGAACGAGGCTTCTTCTAGCTCGGCAT-TGA 3101
||| | || || || || ||||||||||| || |||||||| || || | | ||| | |
Sbjct 3003 ACTCCTAACGGTTGTCGAGGGCTTCCGTGAAAATGAGGCTTCATCAAG-T-G-CATCT-A 3058
Query 3102 AAAACAACACAGAGGAAGCTGCAAATTACAAC-G--AAGAAGACGA-TTTAATTGACATT 3157
|||||| | ||| |||| | || | |||| | |||||||||| |||| ||||||||
Sbjct 3059 TAAACAATAAAGAAGAAGAAG-AAGT--CAACTGTGAAGAAGACGAGTTTA-TTGACATT 3114
Query 3158 GATTCTCTTTTGGATGACGACACTTTCATG 3187
|| ||||||||| | || ||||| || |||
Sbjct 3115 GACTCTCTTTTGAACGATGACACATTGATG 3144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132820929770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5